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Search of human proteins with 157743247
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|157743247 F-box protein 45 [Homo sapiens]
(286 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|157743247 F-box protein 45 [Homo sapiens] 595 e-170
gi|226423905 splA/ryanodine receptor domain and SOCS box contain... 160 9e-40
gi|226423903 splA/ryanodine receptor domain and SOCS box contain... 160 9e-40
gi|14249178 splA/ryanodine receptor domain and SOCS box containi... 160 9e-40
gi|18254460 splA/ryanodine receptor domain and SOCS box containi... 151 7e-37
gi|18141316 splA/ryanodine receptor domain and SOCS box containi... 142 4e-34
gi|27552770 splA/ryanodine receptor domain and SOCS box containi... 49 7e-06
gi|73427806 v-maf musculoaponeurotic fibrosarcoma oncogene homol... 48 9e-06
gi|5453736 v-maf musculoaponeurotic fibrosarcoma oncogene homolo... 48 9e-06
gi|89145413 short stature homeobox 2 isoform a [Homo sapiens] 44 1e-04
gi|4758392 forkhead box D1 [Homo sapiens] 44 1e-04
gi|40068464 AT rich interactive domain 1B (SWI1-like) isoform 2 ... 44 1e-04
gi|40068466 AT rich interactive domain 1B (SWI1-like) isoform 1 ... 44 1e-04
gi|40068462 AT rich interactive domain 1B (SWI1-like) isoform 3 ... 44 1e-04
gi|13994190 frizzled 8 [Homo sapiens] 44 2e-04
gi|5032007 purine-rich element binding protein A [Homo sapiens] 43 3e-04
gi|154091020 leucine-rich repeats and calponin homology (CH) dom... 43 4e-04
gi|110347449 POU domain, class 4, transcription factor 1 [Homo s... 42 8e-04
gi|238859557 regulatory factor X1 [Homo sapiens] 41 0.001
gi|4885597 sine oculis homeobox homolog 3 [Homo sapiens] 41 0.001
gi|125987596 sodium bicarbonate transporter 4 isoform a [Homo sa... 41 0.001
gi|19743827 sodium bicarbonate transporter 4 isoform c [Homo sap... 41 0.001
gi|124244083 F-box protein 10 [Homo sapiens] 41 0.001
gi|122937319 even-skipped homeobox 2 [Homo sapiens] 41 0.001
gi|229577180 MPN domain containing isoform 2 [Homo sapiens] 40 0.002
gi|31542699 MPN domain containing isoform 1 [Homo sapiens] 40 0.002
gi|239757043 PREDICTED: functional smad suppressing element 18 [... 40 0.002
gi|239751555 PREDICTED: functional smad suppressing element 18 [... 40 0.002
gi|239746067 PREDICTED: functional smad suppressing element 18 [... 40 0.002
gi|22547197 zinc finger protein of the cerebellum 2 [Homo sapiens] 40 0.002
>gi|157743247 F-box protein 45 [Homo sapiens]
Length = 286
Score = 595 bits (1535), Expect = e-170
Identities = 286/286 (100%), Positives = 286/286 (100%)
Query: 1 MAAPAPGAGAASGGAGCSGGGAGAGAGSGSGAAGAGGRLPSRVLELVFSYLELSELRSCA 60
MAAPAPGAGAASGGAGCSGGGAGAGAGSGSGAAGAGGRLPSRVLELVFSYLELSELRSCA
Sbjct: 1 MAAPAPGAGAASGGAGCSGGGAGAGAGSGSGAAGAGGRLPSRVLELVFSYLELSELRSCA 60
Query: 61 LVCKHWYRCLHGDENSEVWRSLCARSLAEEALRTDILCNLPSYKAKIRAFQHAFSTNDCS 120
LVCKHWYRCLHGDENSEVWRSLCARSLAEEALRTDILCNLPSYKAKIRAFQHAFSTNDCS
Sbjct: 61 LVCKHWYRCLHGDENSEVWRSLCARSLAEEALRTDILCNLPSYKAKIRAFQHAFSTNDCS 120
Query: 121 RNVYIKKNGFTLHRNPIAQSTDGARTKIGFSEGRHAWEVWWEGPLGTVAVIGIATKRAPM 180
RNVYIKKNGFTLHRNPIAQSTDGARTKIGFSEGRHAWEVWWEGPLGTVAVIGIATKRAPM
Sbjct: 121 RNVYIKKNGFTLHRNPIAQSTDGARTKIGFSEGRHAWEVWWEGPLGTVAVIGIATKRAPM 180
Query: 181 QCQGYVALLGSDDQSWGWNLVDNNLLHNGEVNGSFPQCNNAPKYQIGERIRVILDMEDKT 240
QCQGYVALLGSDDQSWGWNLVDNNLLHNGEVNGSFPQCNNAPKYQIGERIRVILDMEDKT
Sbjct: 181 QCQGYVALLGSDDQSWGWNLVDNNLLHNGEVNGSFPQCNNAPKYQIGERIRVILDMEDKT 240
Query: 241 LAFERGYEFLGVAFRGLPKVCLYPAVSAVYGNTEVTLVYLGKPLDG 286
LAFERGYEFLGVAFRGLPKVCLYPAVSAVYGNTEVTLVYLGKPLDG
Sbjct: 241 LAFERGYEFLGVAFRGLPKVCLYPAVSAVYGNTEVTLVYLGKPLDG 286
>gi|226423905 splA/ryanodine receptor domain and SOCS box containing
2 isoform 2 [Homo sapiens]
Length = 267
Score = 160 bits (406), Expect = 9e-40
Identities = 82/177 (46%), Positives = 113/177 (63%), Gaps = 7/177 (3%)
Query: 111 QHAFSTNDCSRNVYIKKNGFTLHRNPIAQSTDGARTKIGFSEGRHAWEVWWEGPL---GT 167
+H ++ DCS N+ +K+ G R P+AQSTDGAR K G+S G HAWE+ W PL GT
Sbjct: 45 RHGWNPKDCSENIEVKEGGLYFERRPVAQSTDGARGKRGYSRGLHAWEISW--PLEQRGT 102
Query: 168 VAVIGIATKRAPMQCQGYVALLGSDDQSWGWNLVDNNLLHNGEVNGS--FPQCNNAPKYQ 225
AV+G+AT AP+Q Y ALLGS+ +SWGW++ L H + G+ +P + +
Sbjct: 103 HAVVGVATALAPLQTDHYAALLGSNSESWGWDIGRGKLYHQSKGPGAPQYPAGTQGEQLE 162
Query: 226 IGERIRVILDMEDKTLAFERGYEFLGVAFRGLPKVCLYPAVSAVYGNTEVTLVYLGK 282
+ ER+ V+LDME+ TL + G +LG AFRGL LYPAVSAV+G +V + YLG+
Sbjct: 163 VPERLLVVLDMEEGTLGYAIGGTYLGPAFRGLKGRTLYPAVSAVWGQCQVRIRYLGE 219
>gi|226423903 splA/ryanodine receptor domain and SOCS box containing
2 isoform 1 [Homo sapiens]
Length = 263
Score = 160 bits (406), Expect = 9e-40
Identities = 82/177 (46%), Positives = 113/177 (63%), Gaps = 7/177 (3%)
Query: 111 QHAFSTNDCSRNVYIKKNGFTLHRNPIAQSTDGARTKIGFSEGRHAWEVWWEGPL---GT 167
+H ++ DCS N+ +K+ G R P+AQSTDGAR K G+S G HAWE+ W PL GT
Sbjct: 45 RHGWNPKDCSENIEVKEGGLYFERRPVAQSTDGARGKRGYSRGLHAWEISW--PLEQRGT 102
Query: 168 VAVIGIATKRAPMQCQGYVALLGSDDQSWGWNLVDNNLLHNGEVNGS--FPQCNNAPKYQ 225
AV+G+AT AP+Q Y ALLGS+ +SWGW++ L H + G+ +P + +
Sbjct: 103 HAVVGVATALAPLQTDHYAALLGSNSESWGWDIGRGKLYHQSKGPGAPQYPAGTQGEQLE 162
Query: 226 IGERIRVILDMEDKTLAFERGYEFLGVAFRGLPKVCLYPAVSAVYGNTEVTLVYLGK 282
+ ER+ V+LDME+ TL + G +LG AFRGL LYPAVSAV+G +V + YLG+
Sbjct: 163 VPERLLVVLDMEEGTLGYAIGGTYLGPAFRGLKGRTLYPAVSAVWGQCQVRIRYLGE 219
>gi|14249178 splA/ryanodine receptor domain and SOCS box containing
2 isoform 1 [Homo sapiens]
Length = 263
Score = 160 bits (406), Expect = 9e-40
Identities = 82/177 (46%), Positives = 113/177 (63%), Gaps = 7/177 (3%)
Query: 111 QHAFSTNDCSRNVYIKKNGFTLHRNPIAQSTDGARTKIGFSEGRHAWEVWWEGPL---GT 167
+H ++ DCS N+ +K+ G R P+AQSTDGAR K G+S G HAWE+ W PL GT
Sbjct: 45 RHGWNPKDCSENIEVKEGGLYFERRPVAQSTDGARGKRGYSRGLHAWEISW--PLEQRGT 102
Query: 168 VAVIGIATKRAPMQCQGYVALLGSDDQSWGWNLVDNNLLHNGEVNGS--FPQCNNAPKYQ 225
AV+G+AT AP+Q Y ALLGS+ +SWGW++ L H + G+ +P + +
Sbjct: 103 HAVVGVATALAPLQTDHYAALLGSNSESWGWDIGRGKLYHQSKGPGAPQYPAGTQGEQLE 162
Query: 226 IGERIRVILDMEDKTLAFERGYEFLGVAFRGLPKVCLYPAVSAVYGNTEVTLVYLGK 282
+ ER+ V+LDME+ TL + G +LG AFRGL LYPAVSAV+G +V + YLG+
Sbjct: 163 VPERLLVVLDMEEGTLGYAIGGTYLGPAFRGLKGRTLYPAVSAVWGQCQVRIRYLGE 219
>gi|18254460 splA/ryanodine receptor domain and SOCS box containing
4 [Homo sapiens]
Length = 273
Score = 151 bits (381), Expect = 7e-37
Identities = 82/193 (42%), Positives = 125/193 (64%), Gaps = 6/193 (3%)
Query: 93 RTDILCNLPSYKAKIRAFQHAFSTNDCSRNVYIKKNG-FTLHRNPIAQSTDGARTKIGFS 151
R D L ++P+ ++ +HA++ D S NV++K + T HR+P+AQSTDG R K+G +
Sbjct: 36 RLDQLLDMPAAGLAVQ-LRHAWNPEDRSLNVFVKDDDRLTFHRHPVAQSTDGIRGKVGHA 94
Query: 152 EGRHAWEVWWEG-PLGTVAVIGIATKRAPMQCQGYVALLGSDDQSWGWNLVDNNLLHNG- 209
G HAW++ W GT AV+G+AT RAP+ GY AL+GSD +SWGW+L + L H+G
Sbjct: 95 RGLHAWQINWPARQRGTHAVVGVATARAPLHSVGYTALVGSDAESWGWDLGRSRLYHDGK 154
Query: 210 -EVNGSFPQCNNAPK-YQIGERIRVILDMEDKTLAFERGYEFLGVAFRGLPKVCLYPAVS 267
+ ++P + + + + + V+LDM++ TL+F ++LGVAFRGL LYP VS
Sbjct: 155 NQPGVAYPAFLGPDEAFALPDSLLVVLDMDEGTLSFIVDGQYLGVAFRGLKGKKLYPVVS 214
Query: 268 AVYGNTEVTLVYL 280
AV+G+ EVT+ Y+
Sbjct: 215 AVWGHCEVTMRYI 227
>gi|18141316 splA/ryanodine receptor domain and SOCS box containing
1 [Homo sapiens]
Length = 273
Score = 142 bits (357), Expect = 4e-34
Identities = 75/193 (38%), Positives = 120/193 (62%), Gaps = 6/193 (3%)
Query: 93 RTDILCNLPSYKAKIRAFQHAFSTNDCSRNVYIKKNG-FTLHRNPIAQSTDGARTKIGFS 151
R D+L ++P ++ H+++ ND S NV++K++ HR+P+AQSTD R K+G++
Sbjct: 36 RLDLLLDMPPVSYDVQLL-HSWNNNDRSLNVFVKEDDKLIFHRHPVAQSTDAIRGKVGYT 94
Query: 152 EGRHAWEVWWE-GPLGTVAVIGIATKRAPMQCQGYVALLGSDDQSWGWNLVDNNLLHNG- 209
G H W++ W GT AV+G+AT AP+ GY L+G++ +SWGW+L N L H+G
Sbjct: 95 RGLHVWQITWAMRQRGTHAVVGVATADAPLHSVGYTTLVGNNHESWGWDLGRNRLYHDGK 154
Query: 210 -EVNGSFPQCNNAPK-YQIGERIRVILDMEDKTLAFERGYEFLGVAFRGLPKVCLYPAVS 267
+ + ++P + + + + V LDM+D TL+F +++GVAFRGL LYP VS
Sbjct: 155 NQPSKTYPAFLEPDETFIVPDSFLVALDMDDGTLSFIVDGQYMGVAFRGLKGKKLYPVVS 214
Query: 268 AVYGNTEVTLVYL 280
AV+G+ E+ + YL
Sbjct: 215 AVWGHCEIRMRYL 227
>gi|27552770 splA/ryanodine receptor domain and SOCS box containing
3 [Homo sapiens]
Length = 355
Score = 48.5 bits (114), Expect = 7e-06
Identities = 39/118 (33%), Positives = 55/118 (46%), Gaps = 10/118 (8%)
Query: 152 EGRHAWEVWWEGPL-GTVAVIGIATKRAPMQC--QGYVALLGSDDQSWGWNLVDNNLLHN 208
EG+H WE+ P+ GT ++GI T + + +LLG D+ SWG L LLH+
Sbjct: 146 EGQHFWEIKMTSPVYGTDMMVGIGTSDVDLDKYRHTFCSLLGRDEDSWG--LSYTGLLHH 203
Query: 209 GEVNGSFPQCNNAPKYQIGERIRVILDMEDKTLAFERGYEFLGVAFRGLPKVCLYPAV 266
SF + ++ G I V LD TL F + + +GVA L YP V
Sbjct: 204 KGDKTSF-----SSRFGQGSIIGVHLDTWHGTLTFFKNRKCIGVAATKLQNKRFYPMV 256
>gi|73427806 v-maf musculoaponeurotic fibrosarcoma oncogene homolog
isoform b [Homo sapiens]
Length = 373
Score = 48.1 bits (113), Expect = 9e-06
Identities = 25/40 (62%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
Query: 2 AAPAPGAGAASGG--AGCSGGGAGAGAGSGSGAAGAGGRL 39
AA A GAG A GG A GGG G G G G GAAGAGG L
Sbjct: 207 AASAGGAGGAGGGGPASAGGGGGGGGGGGGGGAAGAGGAL 246
Score = 38.9 bits (89), Expect = 0.005
Identities = 17/34 (50%), Positives = 19/34 (55%)
Query: 4 PAPGAGAASGGAGCSGGGAGAGAGSGSGAAGAGG 37
P GA A+G A S GGAG G G +AG GG
Sbjct: 195 PTAGAPGAAGSAAASAGGAGGAGGGGPASAGGGG 228
Score = 30.0 bits (66), Expect = 2.4
Identities = 15/32 (46%), Positives = 15/32 (46%)
Query: 8 AGAASGGAGCSGGGAGAGAGSGSGAAGAGGRL 39
AG GG G GGG AGAG A G L
Sbjct: 224 AGGGGGGGGGGGGGGAAGAGGALHPHHAAGGL 255
Score = 29.6 bits (65), Expect = 3.2
Identities = 14/34 (41%), Positives = 15/34 (44%)
Query: 4 PAPGAGAASGGAGCSGGGAGAGAGSGSGAAGAGG 37
PA G GG G GGGA G+ AGG
Sbjct: 221 PASAGGGGGGGGGGGGGGAAGAGGALHPHHAAGG 254
Score = 28.1 bits (61), Expect = 9.2
Identities = 16/50 (32%), Positives = 19/50 (38%)
Query: 7 GAGAASGGAGCSGGGAGAGAGSGSGAAGAGGRLPSRVLELVFSYLELSEL 56
G G GG G GG AGAG A G R + + + EL
Sbjct: 225 GGGGGGGGGGGGGGAAGAGGALHPHHAAGGLHFDDRFSDEQLVTMSVREL 274
>gi|5453736 v-maf musculoaponeurotic fibrosarcoma oncogene homolog
isoform a [Homo sapiens]
Length = 403
Score = 48.1 bits (113), Expect = 9e-06
Identities = 25/40 (62%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
Query: 2 AAPAPGAGAASGG--AGCSGGGAGAGAGSGSGAAGAGGRL 39
AA A GAG A GG A GGG G G G G GAAGAGG L
Sbjct: 207 AASAGGAGGAGGGGPASAGGGGGGGGGGGGGGAAGAGGAL 246
Score = 38.9 bits (89), Expect = 0.005
Identities = 17/34 (50%), Positives = 19/34 (55%)
Query: 4 PAPGAGAASGGAGCSGGGAGAGAGSGSGAAGAGG 37
P GA A+G A S GGAG G G +AG GG
Sbjct: 195 PTAGAPGAAGSAAASAGGAGGAGGGGPASAGGGG 228
Score = 30.0 bits (66), Expect = 2.4
Identities = 15/32 (46%), Positives = 15/32 (46%)
Query: 8 AGAASGGAGCSGGGAGAGAGSGSGAAGAGGRL 39
AG GG G GGG AGAG A G L
Sbjct: 224 AGGGGGGGGGGGGGGAAGAGGALHPHHAAGGL 255
Score = 29.6 bits (65), Expect = 3.2
Identities = 14/34 (41%), Positives = 15/34 (44%)
Query: 4 PAPGAGAASGGAGCSGGGAGAGAGSGSGAAGAGG 37
PA G GG G GGGA G+ AGG
Sbjct: 221 PASAGGGGGGGGGGGGGGAAGAGGALHPHHAAGG 254
Score = 28.1 bits (61), Expect = 9.2
Identities = 16/50 (32%), Positives = 19/50 (38%)
Query: 7 GAGAASGGAGCSGGGAGAGAGSGSGAAGAGGRLPSRVLELVFSYLELSEL 56
G G GG G GG AGAG A G R + + + EL
Sbjct: 225 GGGGGGGGGGGGGGAAGAGGALHPHHAAGGLHFDDRFSDEQLVTMSVREL 274
>gi|89145413 short stature homeobox 2 isoform a [Homo sapiens]
Length = 331
Score = 44.3 bits (103), Expect = 1e-04
Identities = 20/45 (44%), Positives = 23/45 (51%)
Query: 2 AAPAPGAGAASGGAGCSGGGAGAGAGSGSGAAGAGGRLPSRVLEL 46
A A G G GG G GGG G G G+G GGR P R L++
Sbjct: 55 AVRAAGGGGGGGGGGGGGGGGGGVGGGGAGGGAGGGRSPVRELDM 99
Score = 28.5 bits (62), Expect = 7.1
Identities = 13/31 (41%), Positives = 14/31 (45%)
Query: 7 GAGAASGGAGCSGGGAGAGAGSGSGAAGAGG 37
G S A + GG G G G G G G GG
Sbjct: 47 GRDDRSSPAVRAAGGGGGGGGGGGGGGGGGG 77
>gi|4758392 forkhead box D1 [Homo sapiens]
Length = 465
Score = 44.3 bits (103), Expect = 1e-04
Identities = 23/51 (45%), Positives = 33/51 (64%), Gaps = 3/51 (5%)
Query: 3 APAPGAGAASGGAGCSGGGAGAGAGSGSGAAGAGGRLPSRVLELVFSYLEL 53
+PAP A + GAG GGG G GAG G G+AG+G + P +++ +SY+ L
Sbjct: 86 SPAPPGPAPAAGAGAGGGGGGGGAG-GGGSAGSGAKNP--LVKPPYSYIAL 133
Score = 42.0 bits (97), Expect = 6e-04
Identities = 36/120 (30%), Positives = 47/120 (39%), Gaps = 33/120 (27%)
Query: 4 PAPGAGAASGGAGCSGGGAGAGAGSGSGAAGAGGRLPSRVLELVFSYLELSELRSCALVC 63
PAP AGA +GG G GGGAG G +GSGA + P + L+ + S + L
Sbjct: 92 PAPAAGAGAGGGG-GGGGAGGGGSAGSGAKNPLVKPPYSYIALITMAILQSPKKRLTL-- 148
Query: 64 KHWYRCLHGDENSEVWRSLCARSLAEEALRTDILCNLPSYKAKIRAFQ----HAFSTNDC 119
SE+ + R P Y+ K A+Q H S NDC
Sbjct: 149 ------------SEICEFISGR--------------FPYYREKFPAWQNSIRHNLSLNDC 182
Score = 29.3 bits (64), Expect = 4.1
Identities = 15/32 (46%), Positives = 17/32 (53%)
Query: 2 AAPAPGAGAASGGAGCSGGGAGAGAGSGSGAA 33
A+P+P AA G SGGG A A G AA
Sbjct: 390 ASPSPSPVAAPPAPGSSGGGCAAQAAVGPAAA 421
>gi|40068464 AT rich interactive domain 1B (SWI1-like) isoform 2
[Homo sapiens]
Length = 2191
Score = 44.3 bits (103), Expect = 1e-04
Identities = 20/32 (62%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
Query: 6 PGAGAASGGAGCSGGGAGAGAGSGSGAAGAGG 37
PGAG GG G GGG G+G G G G AGAGG
Sbjct: 246 PGAGGGGGGGG--GGGGGSGGGGGGGGAGAGG 275
Score = 39.7 bits (91), Expect = 0.003
Identities = 18/34 (52%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 4 PAPGAGAASGGAGCSG-GGAGAGAGSGSGAAGAG 36
P G G GG G G GG G G G+G+G AGAG
Sbjct: 246 PGAGGGGGGGGGGGGGSGGGGGGGGAGAGGAGAG 279
Score = 39.3 bits (90), Expect = 0.004
Identities = 16/29 (55%), Positives = 17/29 (58%)
Query: 7 GAGAASGGAGCSGGGAGAGAGSGSGAAGA 35
G G GG G GGG G GAG+G AGA
Sbjct: 252 GGGGGGGGGGSGGGGGGGGAGAGGAGAGA 280
Score = 36.2 bits (82), Expect = 0.034
Identities = 17/30 (56%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Query: 7 GAGAASGGAGCSGGGAGAGA-GSGSGAAGA 35
G G GG+G GGG GAGA G+G+GA A
Sbjct: 254 GGGGGGGGSGGGGGGGGAGAGGAGAGAVAA 283
Score = 35.8 bits (81), Expect = 0.044
Identities = 16/31 (51%), Positives = 18/31 (58%)
Query: 7 GAGAASGGAGCSGGGAGAGAGSGSGAAGAGG 37
G G GGAG G GAGA A + + AA A G
Sbjct: 263 GGGGGGGGAGAGGAGAGAVAAAAAAAAAAAG 293
Score = 35.0 bits (79), Expect = 0.076
Identities = 17/34 (50%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
Query: 7 GAGAASGGAGCSGGGAGAG---AGSGSGAAGAGG 37
G+G GG G GGAGAG A + + AA AGG
Sbjct: 261 GSGGGGGGGGAGAGGAGAGAVAAAAAAAAAAAGG 294
Score = 33.5 bits (75), Expect = 0.22
Identities = 14/29 (48%), Positives = 15/29 (51%)
Query: 9 GAASGGAGCSGGGAGAGAGSGSGAAGAGG 37
G + GAG GGG G G G G G GG
Sbjct: 242 GYSRPGAGGGGGGGGGGGGGSGGGGGGGG 270
Score = 32.0 bits (71), Expect = 0.64
Identities = 16/29 (55%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Query: 7 GAGAASGGAGCSGGGAGAGAGSGSGAAGA 35
G G + GG G G GAG GAG+G+ AA A
Sbjct: 258 GGGGSGGGGGGGGAGAG-GAGAGAVAAAA 285
Score = 32.0 bits (71), Expect = 0.64
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 7 GAGAASGGAGCSGGGAGAGAGSGSGAAGA 35
G G+ GG G G GAGAG+ + AA A
Sbjct: 259 GGGSGGGGGGGGAGAGGAGAGAVAAAAAA 287
Score = 31.6 bits (70), Expect = 0.84
Identities = 14/34 (41%), Positives = 17/34 (50%)
Query: 3 APAPGAGAASGGAGCSGGGAGAGAGSGSGAAGAG 36
A GAGA + A + AG G G G G + AG
Sbjct: 273 AGGAGAGAVAAAAAAAAAAAGGGGGGGYGGSSAG 306
Score = 31.2 bits (69), Expect = 1.1
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 7 GAGAASGGAGCSGGGAGAGAGSGSGAAGAGG 37
G G GAG +G GA A A + + AA GG
Sbjct: 265 GGGGGGAGAGGAGAGAVAAAAAAAAAAAGGG 295
Score = 30.8 bits (68), Expect = 1.4
Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Query: 7 GAGAASGGAGCSGGGAGAGAGSGSGAAGAGG 37
G GA +GGAG G A A + + AAG GG
Sbjct: 268 GGGAGAGGAG--AGAVAAAAAAAAAAAGGGG 296
Score = 30.0 bits (66), Expect = 2.4
Identities = 17/36 (47%), Positives = 18/36 (50%)
Query: 2 AAPAPGAGAASGGAGCSGGGAGAGAGSGSGAAGAGG 37
AA A A AA GG G GG+ AG G S GG
Sbjct: 283 AAAAAAAAAAGGGGGGGYGGSSAGYGVLSSPRQQGG 318
Score = 29.3 bits (64), Expect = 4.1
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 7 GAGAASGGAGCSGGGAGAGAGSGSGAAGAG 36
GA AA+ A + G G G G G +AG G
Sbjct: 279 GAVAAAAAAAAAAAGGGGGGGYGGSSAGYG 308
>gi|40068466 AT rich interactive domain 1B (SWI1-like) isoform 1
[Homo sapiens]
Length = 2231
Score = 44.3 bits (103), Expect = 1e-04
Identities = 20/32 (62%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
Query: 6 PGAGAASGGAGCSGGGAGAGAGSGSGAAGAGG 37
PGAG GG G GGG G+G G G G AGAGG
Sbjct: 246 PGAGGGGGGGG--GGGGGSGGGGGGGGAGAGG 275
Score = 39.7 bits (91), Expect = 0.003
Identities = 18/34 (52%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 4 PAPGAGAASGGAGCSG-GGAGAGAGSGSGAAGAG 36
P G G GG G G GG G G G+G+G AGAG
Sbjct: 246 PGAGGGGGGGGGGGGGSGGGGGGGGAGAGGAGAG 279
Score = 39.3 bits (90), Expect = 0.004
Identities = 16/29 (55%), Positives = 17/29 (58%)
Query: 7 GAGAASGGAGCSGGGAGAGAGSGSGAAGA 35
G G GG G GGG G GAG+G AGA
Sbjct: 252 GGGGGGGGGGSGGGGGGGGAGAGGAGAGA 280
Score = 36.2 bits (82), Expect = 0.034
Identities = 17/30 (56%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Query: 7 GAGAASGGAGCSGGGAGAGA-GSGSGAAGA 35
G G GG+G GGG GAGA G+G+GA A
Sbjct: 254 GGGGGGGGSGGGGGGGGAGAGGAGAGAVAA 283
Score = 35.8 bits (81), Expect = 0.044
Identities = 16/31 (51%), Positives = 18/31 (58%)
Query: 7 GAGAASGGAGCSGGGAGAGAGSGSGAAGAGG 37
G G GGAG G GAGA A + + AA A G
Sbjct: 263 GGGGGGGGAGAGGAGAGAVAAAAAAAAAAAG 293
Score = 35.0 bits (79), Expect = 0.076
Identities = 17/34 (50%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
Query: 7 GAGAASGGAGCSGGGAGAG---AGSGSGAAGAGG 37
G+G GG G GGAGAG A + + AA AGG
Sbjct: 261 GSGGGGGGGGAGAGGAGAGAVAAAAAAAAAAAGG 294
Score = 33.5 bits (75), Expect = 0.22
Identities = 14/29 (48%), Positives = 15/29 (51%)
Query: 9 GAASGGAGCSGGGAGAGAGSGSGAAGAGG 37
G + GAG GGG G G G G G GG
Sbjct: 242 GYSRPGAGGGGGGGGGGGGGSGGGGGGGG 270
Score = 32.0 bits (71), Expect = 0.64
Identities = 16/29 (55%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Query: 7 GAGAASGGAGCSGGGAGAGAGSGSGAAGA 35
G G + GG G G GAG GAG+G+ AA A
Sbjct: 258 GGGGSGGGGGGGGAGAG-GAGAGAVAAAA 285
Score = 32.0 bits (71), Expect = 0.64
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 7 GAGAASGGAGCSGGGAGAGAGSGSGAAGA 35
G G+ GG G G GAGAG+ + AA A
Sbjct: 259 GGGSGGGGGGGGAGAGGAGAGAVAAAAAA 287
Score = 31.6 bits (70), Expect = 0.84
Identities = 14/34 (41%), Positives = 17/34 (50%)
Query: 3 APAPGAGAASGGAGCSGGGAGAGAGSGSGAAGAG 36
A GAGA + A + AG G G G G + AG
Sbjct: 273 AGGAGAGAVAAAAAAAAAAAGGGGGGGYGGSSAG 306
Score = 31.2 bits (69), Expect = 1.1
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 7 GAGAASGGAGCSGGGAGAGAGSGSGAAGAGG 37
G G GAG +G GA A A + + AA GG
Sbjct: 265 GGGGGGAGAGGAGAGAVAAAAAAAAAAAGGG 295
Score = 30.8 bits (68), Expect = 1.4
Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Query: 7 GAGAASGGAGCSGGGAGAGAGSGSGAAGAGG 37
G GA +GGAG G A A + + AAG GG
Sbjct: 268 GGGAGAGGAG--AGAVAAAAAAAAAAAGGGG 296
Score = 30.0 bits (66), Expect = 2.4
Identities = 17/36 (47%), Positives = 18/36 (50%)
Query: 2 AAPAPGAGAASGGAGCSGGGAGAGAGSGSGAAGAGG 37
AA A A AA GG G GG+ AG G S GG
Sbjct: 283 AAAAAAAAAAGGGGGGGYGGSSAGYGVLSSPRQQGG 318
Score = 29.3 bits (64), Expect = 4.1
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 7 GAGAASGGAGCSGGGAGAGAGSGSGAAGAG 36
GA AA+ A + G G G G G +AG G
Sbjct: 279 GAVAAAAAAAAAAAGGGGGGGYGGSSAGYG 308
>gi|40068462 AT rich interactive domain 1B (SWI1-like) isoform 3
[Homo sapiens]
Length = 2178
Score = 44.3 bits (103), Expect = 1e-04
Identities = 20/32 (62%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
Query: 6 PGAGAASGGAGCSGGGAGAGAGSGSGAAGAGG 37
PGAG GG G GGG G+G G G G AGAGG
Sbjct: 246 PGAGGGGGGGG--GGGGGSGGGGGGGGAGAGG 275
Score = 39.7 bits (91), Expect = 0.003
Identities = 18/34 (52%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 4 PAPGAGAASGGAGCSG-GGAGAGAGSGSGAAGAG 36
P G G GG G G GG G G G+G+G AGAG
Sbjct: 246 PGAGGGGGGGGGGGGGSGGGGGGGGAGAGGAGAG 279
Score = 39.3 bits (90), Expect = 0.004
Identities = 16/29 (55%), Positives = 17/29 (58%)
Query: 7 GAGAASGGAGCSGGGAGAGAGSGSGAAGA 35
G G GG G GGG G GAG+G AGA
Sbjct: 252 GGGGGGGGGGSGGGGGGGGAGAGGAGAGA 280
Score = 36.2 bits (82), Expect = 0.034
Identities = 17/30 (56%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Query: 7 GAGAASGGAGCSGGGAGAGA-GSGSGAAGA 35
G G GG+G GGG GAGA G+G+GA A
Sbjct: 254 GGGGGGGGSGGGGGGGGAGAGGAGAGAVAA 283
Score = 35.8 bits (81), Expect = 0.044
Identities = 16/31 (51%), Positives = 18/31 (58%)
Query: 7 GAGAASGGAGCSGGGAGAGAGSGSGAAGAGG 37
G G GGAG G GAGA A + + AA A G
Sbjct: 263 GGGGGGGGAGAGGAGAGAVAAAAAAAAAAAG 293
Score = 35.0 bits (79), Expect = 0.076
Identities = 17/34 (50%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
Query: 7 GAGAASGGAGCSGGGAGAG---AGSGSGAAGAGG 37
G+G GG G GGAGAG A + + AA AGG
Sbjct: 261 GSGGGGGGGGAGAGGAGAGAVAAAAAAAAAAAGG 294
Score = 33.5 bits (75), Expect = 0.22
Identities = 14/29 (48%), Positives = 15/29 (51%)
Query: 9 GAASGGAGCSGGGAGAGAGSGSGAAGAGG 37
G + GAG GGG G G G G G GG
Sbjct: 242 GYSRPGAGGGGGGGGGGGGGSGGGGGGGG 270
Score = 32.0 bits (71), Expect = 0.64
Identities = 16/29 (55%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Query: 7 GAGAASGGAGCSGGGAGAGAGSGSGAAGA 35
G G + GG G G GAG GAG+G+ AA A
Sbjct: 258 GGGGSGGGGGGGGAGAG-GAGAGAVAAAA 285
Score = 32.0 bits (71), Expect = 0.64
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 7 GAGAASGGAGCSGGGAGAGAGSGSGAAGA 35
G G+ GG G G GAGAG+ + AA A
Sbjct: 259 GGGSGGGGGGGGAGAGGAGAGAVAAAAAA 287
Score = 31.6 bits (70), Expect = 0.84
Identities = 14/34 (41%), Positives = 17/34 (50%)
Query: 3 APAPGAGAASGGAGCSGGGAGAGAGSGSGAAGAG 36
A GAGA + A + AG G G G G + AG
Sbjct: 273 AGGAGAGAVAAAAAAAAAAAGGGGGGGYGGSSAG 306
Score = 31.2 bits (69), Expect = 1.1
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 7 GAGAASGGAGCSGGGAGAGAGSGSGAAGAGG 37
G G GAG +G GA A A + + AA GG
Sbjct: 265 GGGGGGAGAGGAGAGAVAAAAAAAAAAAGGG 295
Score = 30.8 bits (68), Expect = 1.4
Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Query: 7 GAGAASGGAGCSGGGAGAGAGSGSGAAGAGG 37
G GA +GGAG G A A + + AAG GG
Sbjct: 268 GGGAGAGGAG--AGAVAAAAAAAAAAAGGGG 296
Score = 30.0 bits (66), Expect = 2.4
Identities = 17/36 (47%), Positives = 18/36 (50%)
Query: 2 AAPAPGAGAASGGAGCSGGGAGAGAGSGSGAAGAGG 37
AA A A AA GG G GG+ AG G S GG
Sbjct: 283 AAAAAAAAAAGGGGGGGYGGSSAGYGVLSSPRQQGG 318
Score = 29.3 bits (64), Expect = 4.1
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 7 GAGAASGGAGCSGGGAGAGAGSGSGAAGAG 36
GA AA+ A + G G G G G +AG G
Sbjct: 279 GAVAAAAAAAAAAAGGGGGGGYGGSSAGYG 308
>gi|13994190 frizzled 8 [Homo sapiens]
Length = 694
Score = 43.5 bits (101), Expect = 2e-04
Identities = 24/43 (55%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 2 AAPAPGAGA-ASGGAGCSGGGAGAGAGSGSGAAGAGGRLPSRV 43
AA GAGA A+GG G GGG G G G G G G GG L S V
Sbjct: 627 AAVGGGAGATAAGGGGGPGGGGGGGPGGGGGPGGGGGSLYSDV 669
Score = 37.7 bits (86), Expect = 0.012
Identities = 23/34 (67%), Positives = 25/34 (73%), Gaps = 4/34 (11%)
Query: 5 APGAGAASGGAGCSGGGAGAGAGSGSGAAGAGGR 38
APGAG A GGAG G AGAGA +G+GA G GGR
Sbjct: 344 APGAGGA-GGAG--GAAAGAGA-AGAGAGGPGGR 373
Score = 35.0 bits (79), Expect = 0.076
Identities = 19/32 (59%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Query: 10 AASGGAGCSGGGAGAG-AGSGSGAAGAGGRLP 40
A SGGA +GG GAG A +G+GAAGAG P
Sbjct: 339 ACSGGAPGAGGAGGAGGAAAGAGAAGAGAGGP 370
Score = 35.0 bits (79), Expect = 0.076
Identities = 17/35 (48%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Query: 5 APGAGAASGGAGCS--GGGAGAGAGSGSGAAGAGG 37
A A GGAG + GGG G G G G G G GG
Sbjct: 623 ASKGAAVGGGAGATAAGGGGGPGGGGGGGPGGGGG 657
Score = 32.7 bits (73), Expect = 0.38
Identities = 15/28 (53%), Positives = 17/28 (60%)
Query: 2 AAPAPGAGAASGGAGCSGGGAGAGAGSG 29
A A GAG A+ GAG +G GAG G G
Sbjct: 347 AGGAGGAGGAAAGAGAAGAGAGGPGGRG 374
Score = 30.4 bits (67), Expect = 1.9
Identities = 14/30 (46%), Positives = 14/30 (46%)
Query: 11 ASGGAGCSGGGAGAGAGSGSGAAGAGGRLP 40
AS GA GG AG G G G GG P
Sbjct: 623 ASKGAAVGGGAGATAAGGGGGPGGGGGGGP 652
>gi|5032007 purine-rich element binding protein A [Homo sapiens]
Length = 322
Score = 43.1 bits (100), Expect = 3e-04
Identities = 22/52 (42%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Query: 6 PGAGAASGGAGCSGGGAGAGAGSGSGAAGAGGRLPSRVLELVFSYLELSELR 57
PG+G+ SGG GGG G G GSG G GA G L EL +++ R
Sbjct: 24 PGSGSGSGG---GGGGGGGGGGSGGGGGGAPGGLQHETQELASKRVDIQNKR 72
Score = 36.6 bits (83), Expect = 0.026
Identities = 17/38 (44%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 5 APGAGAASG--GAGCSGGGAGAGAGSGSGAAGAGGRLP 40
A G+G + G G+G GG G G G G G+ G GG P
Sbjct: 14 ALGSGGSLGHPGSGSGSGGGGGGGGGGGGSGGGGGGAP 51
Score = 33.1 bits (74), Expect = 0.29
Identities = 15/29 (51%), Positives = 19/29 (65%)
Query: 9 GAASGGAGCSGGGAGAGAGSGSGAAGAGG 37
G A+ G+G S G G+G+GSG G G GG
Sbjct: 11 GGAALGSGGSLGHPGSGSGSGGGGGGGGG 39
Score = 32.7 bits (73), Expect = 0.38
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 8 AGAASGGAGCSGGGAGAGAGSGSGAAGAGG 37
+G+ GGA GG+ GSGSG+ G GG
Sbjct: 6 SGSEQGGAALGSGGSLGHPGSGSGSGGGGG 35
Score = 31.6 bits (70), Expect = 0.84
Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 9 GAASGGAGCSGG-GAGAGAGSGSGAAGAGG 37
GAA G G G G+G+G+G G G G GG
Sbjct: 12 GAALGSGGSLGHPGSGSGSGGGGGGGGGGG 41
Score = 30.0 bits (66), Expect = 2.4
Identities = 16/32 (50%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Query: 7 GAGAASGGA-GCSGGGAGAGAGSGSGAAGAGG 37
GA SGG+ G G G+G+G G G G G GG
Sbjct: 12 GAALGSGGSLGHPGSGSGSGGGGGGG-GGGGG 42
>gi|154091020 leucine-rich repeats and calponin homology (CH)
domain containing 2 [Homo sapiens]
Length = 765
Score = 42.7 bits (99), Expect = 4e-04
Identities = 20/38 (52%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
Query: 3 APAPGAGAASGGAGCSGGGAGAG---AGSGSGAAGAGG 37
A + G G SGG GC GGG+ G AG G G AG GG
Sbjct: 2 AASQGGGGNSGGGGCGGGGSSGGCGTAGGGGGGAGGGG 39
Score = 37.4 bits (85), Expect = 0.015
Identities = 17/33 (51%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
Query: 7 GAGAASGGAGCSGGGAGAGAGSGSGAAGAGGRL 39
G G +SGG G +GGG G G+G G G GG L
Sbjct: 17 GGGGSSGGCGTAGGG---GGGAGGGGGGGGGTL 46
>gi|110347449 POU domain, class 4, transcription factor 1 [Homo
sapiens]
Length = 419
Score = 41.6 bits (96), Expect = 8e-04
Identities = 22/45 (48%), Positives = 24/45 (53%), Gaps = 5/45 (11%)
Query: 1 MAAPAPGAGAASGGAGC-----SGGGAGAGAGSGSGAAGAGGRLP 40
+ A A GAGAA+GG G GGG G G G G G G GG P
Sbjct: 127 LMAGAGGAGAAAGGGGAHDGPGGGGGPGGGGGPGGGPGGGGGGGP 171
Score = 39.7 bits (91), Expect = 0.003
Identities = 17/35 (48%), Positives = 17/35 (48%)
Query: 2 AAPAPGAGAASGGAGCSGGGAGAGAGSGSGAAGAG 36
A PG G GG G GGG G G G G G G G
Sbjct: 143 AHDGPGGGGGPGGGGGPGGGPGGGGGGGPGGGGGG 177
Score = 35.8 bits (81), Expect = 0.044
Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Query: 1 MAAPAPGAGAASGGAGCSGGGAGA--GAGSGSGAAGAGG 37
+++P+ A +GGAG + GG GA G G G G G GG
Sbjct: 120 ISSPSLALMAGAGGAGAAAGGGGAHDGPGGGGGPGGGGG 158
Score = 32.0 bits (71), Expect = 0.64
Identities = 14/32 (43%), Positives = 14/32 (43%)
Query: 6 PGAGAASGGAGCSGGGAGAGAGSGSGAAGAGG 37
PG G GG GGG G G G G G G
Sbjct: 153 PGGGGGPGGGPGGGGGGGPGGGGGGPGGGLLG 184
Score = 32.0 bits (71), Expect = 0.64
Identities = 14/31 (45%), Positives = 14/31 (45%)
Query: 7 GAGAASGGAGCSGGGAGAGAGSGSGAAGAGG 37
G G GG G GGG G G G G GG
Sbjct: 155 GGGGPGGGPGGGGGGGPGGGGGGPGGGLLGG 185
Score = 30.0 bits (66), Expect = 2.4
Identities = 14/37 (37%), Positives = 14/37 (37%)
Query: 4 PAPGAGAASGGAGCSGGGAGAGAGSGSGAAGAGGRLP 40
P G G G G GGG G G G G G P
Sbjct: 153 PGGGGGPGGGPGGGGGGGPGGGGGGPGGGLLGGSAHP 189
>gi|238859557 regulatory factor X1 [Homo sapiens]
Length = 979
Score = 41.2 bits (95), Expect = 0.001
Identities = 19/40 (47%), Positives = 26/40 (65%), Gaps = 4/40 (10%)
Query: 2 AAPAPGAGAAS----GGAGCSGGGAGAGAGSGSGAAGAGG 37
++ + GAGA++ GG+G GGG G G G GSG+ G GG
Sbjct: 368 SSTSTGAGASNSSGGGGSGGGGGGGGGGGGGGSGSTGGGG 407
Score = 38.9 bits (89), Expect = 0.005
Identities = 18/36 (50%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 2 AAPAPGAGAASGGAGCSGGGAGAGAGS-GSGAAGAG 36
A+ + G G + GG G GGG G G+GS G G +GAG
Sbjct: 376 ASNSSGGGGSGGGGGGGGGGGGGGSGSTGGGGSGAG 411
Score = 33.9 bits (76), Expect = 0.17
Identities = 14/30 (46%), Positives = 16/30 (53%)
Query: 8 AGAASGGAGCSGGGAGAGAGSGSGAAGAGG 37
A + S GAG S G G+G G G G GG
Sbjct: 367 ASSTSTGAGASNSSGGGGSGGGGGGGGGGG 396
Score = 33.1 bits (74), Expect = 0.29
Identities = 13/33 (39%), Positives = 15/33 (45%)
Query: 5 APGAGAASGGAGCSGGGAGAGAGSGSGAAGAGG 37
A +G + SGGG G G G G G GG
Sbjct: 367 ASSTSTGAGASNSSGGGGSGGGGGGGGGGGGGG 399
Score = 29.3 bits (64), Expect = 4.1
Identities = 14/35 (40%), Positives = 17/35 (48%)
Query: 7 GAGAASGGAGCSGGGAGAGAGSGSGAAGAGGRLPS 41
G G GG G SG G G+G+G+ G L S
Sbjct: 389 GGGGGGGGGGGSGSTGGGGSGAGTYVIQGGYMLGS 423
>gi|4885597 sine oculis homeobox homolog 3 [Homo sapiens]
Length = 332
Score = 41.2 bits (95), Expect = 0.001
Identities = 18/31 (58%), Positives = 18/31 (58%)
Query: 7 GAGAASGGAGCSGGGAGAGAGSGSGAAGAGG 37
GAG G G SGGG GAG G GA G GG
Sbjct: 37 GAGGGGGAGGGSGGGNGAGGGGAGGAGGGGG 67
Score = 40.8 bits (94), Expect = 0.001
Identities = 18/42 (42%), Positives = 20/42 (47%)
Query: 5 APGAGAASGGAGCSGGGAGAGAGSGSGAAGAGGRLPSRVLEL 46
A G G A GG+G G G GAG G G G R P L +
Sbjct: 38 AGGGGGAGGGSGGGNGAGGGGAGGAGGGGGGGSRAPPEELSM 79
Score = 39.7 bits (91), Expect = 0.003
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 7 GAGAASGGAGCSGGGAGAGAGSGSGAAGAGG 37
G G +GG G +GGG+G G G+G G AG G
Sbjct: 33 GGGNGAGGGGGAGGGSGGGNGAGGGGAGGAG 63
Score = 37.4 bits (85), Expect = 0.015
Identities = 19/37 (51%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 1 MAAPAPGAGAASGGAGCSGGGAGAGAGSGSGAAGAGG 37
+A+ G GA GG G G G GAG G GA GAGG
Sbjct: 29 LASSGGGNGAGGGGGAGGGSGGGNGAG-GGGAGGAGG 64
Score = 29.3 bits (64), Expect = 4.1
Identities = 12/27 (44%), Positives = 13/27 (48%)
Query: 2 AAPAPGAGAASGGAGCSGGGAGAGAGS 28
A G G +GG G G G G G GS
Sbjct: 44 AGGGSGGGNGAGGGGAGGAGGGGGGGS 70
>gi|125987596 sodium bicarbonate transporter 4 isoform a [Homo
sapiens]
Length = 1137
Score = 41.2 bits (95), Expect = 0.001
Identities = 19/37 (51%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
Query: 5 APGAGAASGGAGCSGGGAGAGAGSGSGAAGAGGRLPS 41
APG G GG G SGGGAG+G G+G ++G G +P+
Sbjct: 445 APGGGNGGGGGGGSGGGAGSG-GAGGTSSGDDGEMPA 480
Score = 38.5 bits (88), Expect = 0.007
Identities = 16/28 (57%), Positives = 18/28 (64%)
Query: 7 GAGAASGGAGCSGGGAGAGAGSGSGAAG 34
G G A GG GGG G+G G+GSG AG
Sbjct: 441 GGGGAPGGGNGGGGGGGSGGGAGSGGAG 468
Score = 37.4 bits (85), Expect = 0.015
Identities = 17/30 (56%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 9 GAASGGAGCSGGGAGAGAGSGS-GAAGAGG 37
G+ GG G GGG G G G GS G AG+GG
Sbjct: 437 GSVGGGGGAPGGGNGGGGGGGSGGGAGSGG 466
Score = 35.8 bits (81), Expect = 0.044
Identities = 16/31 (51%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 7 GAGAASGGAGCSGGGAGAGAGSGSGAAGAGG 37
G G + G G GGG G G+G G+G+ GAGG
Sbjct: 440 GGGGGAPGGGNGGGG-GGGSGGGAGSGGAGG 469
Score = 29.6 bits (65), Expect = 3.2
Identities = 12/29 (41%), Positives = 13/29 (44%)
Query: 9 GAASGGAGCSGGGAGAGAGSGSGAAGAGG 37
G +G G GG G G G G G GG
Sbjct: 433 GQMNGSVGGGGGAPGGGNGGGGGGGSGGG 461
>gi|19743827 sodium bicarbonate transporter 4 isoform c [Homo
sapiens]
Length = 1121
Score = 41.2 bits (95), Expect = 0.001
Identities = 19/37 (51%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
Query: 5 APGAGAASGGAGCSGGGAGAGAGSGSGAAGAGGRLPS 41
APG G GG G SGGGAG+G G+G ++G G +P+
Sbjct: 445 APGGGNGGGGGGGSGGGAGSG-GAGGTSSGDDGEMPA 480
Score = 38.5 bits (88), Expect = 0.007
Identities = 16/28 (57%), Positives = 18/28 (64%)
Query: 7 GAGAASGGAGCSGGGAGAGAGSGSGAAG 34
G G A GG GGG G+G G+GSG AG
Sbjct: 441 GGGGAPGGGNGGGGGGGSGGGAGSGGAG 468
Score = 37.4 bits (85), Expect = 0.015
Identities = 17/30 (56%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 9 GAASGGAGCSGGGAGAGAGSGS-GAAGAGG 37
G+ GG G GGG G G G GS G AG+GG
Sbjct: 437 GSVGGGGGAPGGGNGGGGGGGSGGGAGSGG 466
Score = 35.8 bits (81), Expect = 0.044
Identities = 16/31 (51%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 7 GAGAASGGAGCSGGGAGAGAGSGSGAAGAGG 37
G G + G G GGG G G+G G+G+ GAGG
Sbjct: 440 GGGGGAPGGGNGGGG-GGGSGGGAGSGGAGG 469
Score = 29.6 bits (65), Expect = 3.2
Identities = 12/29 (41%), Positives = 13/29 (44%)
Query: 9 GAASGGAGCSGGGAGAGAGSGSGAAGAGG 37
G +G G GG G G G G G GG
Sbjct: 433 GQMNGSVGGGGGAPGGGNGGGGGGGSGGG 461
>gi|124244083 F-box protein 10 [Homo sapiens]
Length = 956
Score = 41.2 bits (95), Expect = 0.001
Identities = 17/47 (36%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 37 GRLPSRVLELVFSYLELSELRSCALVCKHWYRCLHGDENSEVWRSLC 83
G LP + ++ +YL L +L C+LVC+ WY + +++ WR LC
Sbjct: 4 GGLPLELWRMILAYLHLPDLGRCSLVCRAWYELILSLDSTR-WRQLC 49
>gi|122937319 even-skipped homeobox 2 [Homo sapiens]
Length = 476
Score = 41.2 bits (95), Expect = 0.001
Identities = 20/36 (55%), Positives = 22/36 (61%)
Query: 2 AAPAPGAGAASGGAGCSGGGAGAGAGSGSGAAGAGG 37
AA A A AA+ G+ GGG G G G G G AGAGG
Sbjct: 398 AAAAAAAAAAALGSRGGGGGGGGGGGGGGGGAGAGG 433
Score = 40.0 bits (92), Expect = 0.002
Identities = 19/36 (52%), Positives = 19/36 (52%)
Query: 2 AAPAPGAGAASGGAGCSGGGAGAGAGSGSGAAGAGG 37
AA A A AA G G GGG G G G G GA GG
Sbjct: 399 AAAAAAAAAALGSRGGGGGGGGGGGGGGGGAGAGGG 434
Score = 38.5 bits (88), Expect = 0.007
Identities = 19/38 (50%), Positives = 20/38 (52%)
Query: 7 GAGAASGGAGCSGGGAGAGAGSGSGAAGAGGRLPSRVL 44
G G GG G GGGAGAG GS G + A R S L
Sbjct: 414 GGGGGGGGGGGGGGGAGAGGGSDFGCSAAAPRSESGFL 451
Score = 36.2 bits (82), Expect = 0.034
Identities = 16/31 (51%), Positives = 19/31 (61%)
Query: 2 AAPAPGAGAASGGAGCSGGGAGAGAGSGSGA 32
AA A G+ GG G GGG G GAG+G G+
Sbjct: 405 AAAALGSRGGGGGGGGGGGGGGGGAGAGGGS 435
Score = 35.8 bits (81), Expect = 0.044
Identities = 16/36 (44%), Positives = 19/36 (52%)
Query: 2 AAPAPGAGAASGGAGCSGGGAGAGAGSGSGAAGAGG 37
AA A G+ GG G GGG G G G+G+G G
Sbjct: 403 AAAAAALGSRGGGGGGGGGGGGGGGGAGAGGGSDFG 438
Score = 32.3 bits (72), Expect = 0.49
Identities = 17/31 (54%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 2 AAPAPGAGAASGGAGCSGGGAGAGAGSGSGA 32
+A G G+ GG+G SGG A G GSGSGA
Sbjct: 156 SASGSGLGSLHGGSGGSGGSAALG-GSGSGA 185
Score = 30.0 bits (66), Expect = 2.4
Identities = 18/45 (40%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
Query: 3 APAPGAGAASGGAGCSGGGAGAGAGSGSGAAGA---GGRLPSRVL 44
APA AG S + + A A A S + AAGA GG P L
Sbjct: 346 APAAAAGLNSAASAAAAAAAAAAAASSAAAAGAPPSGGSAPCSCL 390
Score = 28.9 bits (63), Expect = 5.4
Identities = 12/35 (34%), Positives = 16/35 (45%)
Query: 2 AAPAPGAGAASGGAGCSGGGAGAGAGSGSGAAGAG 36
++ + A AA+ A G G G G G G G G
Sbjct: 394 SSQSAAAAAAAAAAALGSRGGGGGGGGGGGGGGGG 428
>gi|229577180 MPN domain containing isoform 2 [Homo sapiens]
Length = 451
Score = 40.4 bits (93), Expect = 0.002
Identities = 21/44 (47%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 3 APAPGAGAASGGAGCSGGGAGAGAGSGSGAAGAGGRLPSRVLEL 46
A A G + GG+ SGGG G GAG+G G G GG L R + L
Sbjct: 35 AGAGGGRSGGGGSSVSGGGGGGGAGAG-GCGGPGGALTRRAVTL 77
Score = 34.3 bits (77), Expect = 0.13
Identities = 19/36 (52%), Positives = 21/36 (58%), Gaps = 7/36 (19%)
Query: 6 PGAGAASGGAGCSGGG----AGAGAGSGSGAAGAGG 37
P AGA G G SGGG +G G G G+GA G GG
Sbjct: 33 PNAGA---GGGRSGGGGSSVSGGGGGGGAGAGGCGG 65
>gi|31542699 MPN domain containing isoform 1 [Homo sapiens]
Length = 471
Score = 40.4 bits (93), Expect = 0.002
Identities = 21/44 (47%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 3 APAPGAGAASGGAGCSGGGAGAGAGSGSGAAGAGGRLPSRVLEL 46
A A G + GG+ SGGG G GAG+G G G GG L R + L
Sbjct: 35 AGAGGGRSGGGGSSVSGGGGGGGAGAG-GCGGPGGALTRRAVTL 77
Score = 34.3 bits (77), Expect = 0.13
Identities = 19/36 (52%), Positives = 21/36 (58%), Gaps = 7/36 (19%)
Query: 6 PGAGAASGGAGCSGGG----AGAGAGSGSGAAGAGG 37
P AGA G G SGGG +G G G G+GA G GG
Sbjct: 33 PNAGA---GGGRSGGGGSSVSGGGGGGGAGAGGCGG 65
>gi|239757043 PREDICTED: functional smad suppressing element 18
[Homo sapiens]
Length = 996
Score = 40.4 bits (93), Expect = 0.002
Identities = 25/46 (54%), Positives = 28/46 (60%), Gaps = 7/46 (15%)
Query: 2 AAPAPGAGAASGGAGCSGGGAG----AGAGSGSGA---AGAGGRLP 40
AA + AASGGAG GGGAG AG G G+GA AGAG + P
Sbjct: 332 AAASLSVAAASGGAGTGGGGAGGGCVAGVGVGAGAGAGAGAGAKGP 377
Score = 40.0 bits (92), Expect = 0.002
Identities = 21/41 (51%), Positives = 26/41 (63%), Gaps = 3/41 (7%)
Query: 1 MAAPAPGAGAASGGAG---CSGGGAGAGAGSGSGAAGAGGR 38
+AA + GAG GGAG +G G GAGAG+G+GA G R
Sbjct: 338 VAAASGGAGTGGGGAGGGCVAGVGVGAGAGAGAGAGAKGPR 378
Score = 30.0 bits (66), Expect = 2.4
Identities = 15/36 (41%), Positives = 18/36 (50%)
Query: 1 MAAPAPGAGAASGGAGCSGGGAGAGAGSGSGAAGAG 36
+AA + A AAS + GGAG G G G AG
Sbjct: 324 VAAASLSAAAASLSVAAASGGAGTGGGGAGGGCVAG 359
Score = 28.9 bits (63), Expect = 5.4
Identities = 14/35 (40%), Positives = 17/35 (48%)
Query: 2 AAPAPGAGAASGGAGCSGGGAGAGAGSGSGAAGAG 36
AA A ++ A S A GAG+G G AG G
Sbjct: 321 AAVVAAASLSAAAASLSVAAASGGAGTGGGGAGGG 355
>gi|239751555 PREDICTED: functional smad suppressing element 18
[Homo sapiens]
Length = 1252
Score = 40.4 bits (93), Expect = 0.002
Identities = 25/46 (54%), Positives = 28/46 (60%), Gaps = 7/46 (15%)
Query: 2 AAPAPGAGAASGGAGCSGGGAG----AGAGSGSGA---AGAGGRLP 40
AA + AASGGAG GGGAG AG G G+GA AGAG + P
Sbjct: 332 AAASLSVAAASGGAGTGGGGAGGGCVAGVGVGAGAGAGAGAGAKGP 377
Score = 40.0 bits (92), Expect = 0.002
Identities = 21/41 (51%), Positives = 26/41 (63%), Gaps = 3/41 (7%)
Query: 1 MAAPAPGAGAASGGAG---CSGGGAGAGAGSGSGAAGAGGR 38
+AA + GAG GGAG +G G GAGAG+G+GA G R
Sbjct: 338 VAAASGGAGTGGGGAGGGCVAGVGVGAGAGAGAGAGAKGPR 378
Score = 30.0 bits (66), Expect = 2.4
Identities = 15/36 (41%), Positives = 18/36 (50%)
Query: 1 MAAPAPGAGAASGGAGCSGGGAGAGAGSGSGAAGAG 36
+AA + A AAS + GGAG G G G AG
Sbjct: 324 VAAASLSAAAASLSVAAASGGAGTGGGGAGGGCVAG 359
Score = 28.9 bits (63), Expect = 5.4
Identities = 14/35 (40%), Positives = 17/35 (48%)
Query: 2 AAPAPGAGAASGGAGCSGGGAGAGAGSGSGAAGAG 36
AA A ++ A S A GAG+G G AG G
Sbjct: 321 AAVVAAASLSAAAASLSVAAASGGAGTGGGGAGGG 355
>gi|239746067 PREDICTED: functional smad suppressing element 18
[Homo sapiens]
Length = 1252
Score = 40.4 bits (93), Expect = 0.002
Identities = 25/46 (54%), Positives = 28/46 (60%), Gaps = 7/46 (15%)
Query: 2 AAPAPGAGAASGGAGCSGGGAG----AGAGSGSGA---AGAGGRLP 40
AA + AASGGAG GGGAG AG G G+GA AGAG + P
Sbjct: 332 AAASLSVAAASGGAGTGGGGAGGGCVAGVGVGAGAGAGAGAGAKGP 377
Score = 40.0 bits (92), Expect = 0.002
Identities = 21/41 (51%), Positives = 26/41 (63%), Gaps = 3/41 (7%)
Query: 1 MAAPAPGAGAASGGAG---CSGGGAGAGAGSGSGAAGAGGR 38
+AA + GAG GGAG +G G GAGAG+G+GA G R
Sbjct: 338 VAAASGGAGTGGGGAGGGCVAGVGVGAGAGAGAGAGAKGPR 378
Score = 30.0 bits (66), Expect = 2.4
Identities = 15/36 (41%), Positives = 18/36 (50%)
Query: 1 MAAPAPGAGAASGGAGCSGGGAGAGAGSGSGAAGAG 36
+AA + A AAS + GGAG G G G AG
Sbjct: 324 VAAASLSAAAASLSVAAASGGAGTGGGGAGGGCVAG 359
Score = 28.9 bits (63), Expect = 5.4
Identities = 14/35 (40%), Positives = 17/35 (48%)
Query: 2 AAPAPGAGAASGGAGCSGGGAGAGAGSGSGAAGAG 36
AA A ++ A S A GAG+G G AG G
Sbjct: 321 AAVVAAASLSAAAASLSVAAASGGAGTGGGGAGGG 355
>gi|22547197 zinc finger protein of the cerebellum 2 [Homo sapiens]
Length = 532
Score = 40.0 bits (92), Expect = 0.002
Identities = 18/36 (50%), Positives = 20/36 (55%)
Query: 2 AAPAPGAGAASGGAGCSGGGAGAGAGSGSGAAGAGG 37
AA A A G G GGAG G+G GSG+ G GG
Sbjct: 465 AAAAAAVSAVHRGGGSGSGGAGGGSGGGSGSGGGGG 500
Score = 39.3 bits (90), Expect = 0.004
Identities = 18/32 (56%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 7 GAGAASGGAGC-SGGGAGAGAGSGSGAAGAGG 37
G G+ SGGAG SGGG+G+G G G G GG
Sbjct: 477 GGGSGSGGAGGGSGGGSGSGGGGGGAGGGGGG 508
Score = 38.9 bits (89), Expect = 0.005
Identities = 16/30 (53%), Positives = 18/30 (60%)
Query: 7 GAGAASGGAGCSGGGAGAGAGSGSGAAGAG 36
GAG SGG SGGG G G G G++G G
Sbjct: 484 GAGGGSGGGSGSGGGGGGAGGGGGGSSGGG 513
Score = 38.5 bits (88), Expect = 0.007
Identities = 18/35 (51%), Positives = 20/35 (57%)
Query: 2 AAPAPGAGAASGGAGCSGGGAGAGAGSGSGAAGAG 36
AA A A GG+G G G G+G GSGSG G G
Sbjct: 467 AAAAVSAVHRGGGSGSGGAGGGSGGGSGSGGGGGG 501
Score = 37.0 bits (84), Expect = 0.020
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 16/51 (31%)
Query: 3 APAPGAGAAS----------------GGAGCSGGGAGAGAGSGSGAAGAGG 37
+PA A AA+ G+G +GGG+G G+GSG G GAGG
Sbjct: 454 SPAAAAAAAAAAAAAAAVSAVHRGGGSGSGGAGGGSGGGSGSGGGGGGAGG 504
Score = 37.0 bits (84), Expect = 0.020
Identities = 17/39 (43%), Positives = 20/39 (51%)
Query: 7 GAGAASGGAGCSGGGAGAGAGSGSGAAGAGGRLPSRVLE 45
G + GG G +GGG G +G GSG AG L S E
Sbjct: 491 GGSGSGGGGGGAGGGGGGSSGGGSGTAGGHSGLSSNFNE 529
Score = 36.6 bits (83), Expect = 0.026
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 7 GAGAASGGAGCSGGGAGAGAGSGSGAAGAGG 37
G+G A GG+G G G G G+G G G+ G
Sbjct: 481 GSGGAGGGSGGGSGSGGGGGGAGGGGGGSSG 511
Score = 35.0 bits (79), Expect = 0.076
Identities = 14/31 (45%), Positives = 16/31 (51%)
Query: 7 GAGAASGGAGCSGGGAGAGAGSGSGAAGAGG 37
G+G SG G GG G G GS G +G G
Sbjct: 488 GSGGGSGSGGGGGGAGGGGGGSSGGGSGTAG 518
Score = 32.7 bits (73), Expect = 0.38
Identities = 19/39 (48%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 2 AAPAPGAGAASGGAGCSGGGAG---AGAGSGSGAAGAGG 37
AA A A AA+ A GGG+G AG GSG G+ GG
Sbjct: 460 AAAAAAAAAAAVSAVHRGGGSGSGGAGGGSGGGSGSGGG 498
Score = 32.3 bits (72), Expect = 0.49
Identities = 16/36 (44%), Positives = 19/36 (52%)
Query: 2 AAPAPGAGAASGGAGCSGGGAGAGAGSGSGAAGAGG 37
AA A A AA+ A S G G+GSG G+GG
Sbjct: 456 AAAAAAAAAAAAAAAVSAVHRGGGSGSGGAGGGSGG 491
Score = 28.5 bits (62), Expect = 7.1
Identities = 13/35 (37%), Positives = 17/35 (48%)
Query: 2 AAPAPGAGAASGGAGCSGGGAGAGAGSGSGAAGAG 36
AA A A AA+ G G+G+G G +G G
Sbjct: 458 AAAAAAAAAAAAAVSAVHRGGGSGSGGAGGGSGGG 492
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.136 0.435
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,139,548
Number of Sequences: 37866
Number of extensions: 608131
Number of successful extensions: 16508
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 429
Number of HSP's successfully gapped in prelim test: 160
Number of HSP's that attempted gapping in prelim test: 7401
Number of HSP's gapped (non-prelim): 5662
length of query: 286
length of database: 18,247,518
effective HSP length: 101
effective length of query: 185
effective length of database: 14,423,052
effective search space: 2668264620
effective search space used: 2668264620
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.