Guide to the Human Genome
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Name: SPSB2 Sequence: fasta or formatted (263aa) NCBI GI: 226423903
Description:

splA/ryanodine receptor domain and SOCS box containing 2 isoform 1

Referenced in:

Receptor Tyrosine Kinases

Other entries for this name:
alt mRNA [263aa] splA/ryanodine receptor domain and SOCS box containing 2 isoform 1
alt prot [267aa] splA/ryanodine receptor domain and SOCS box containing 2 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.7         23           2
 C cysteine            1.5          4           1
 D aspartate           3.0          8           1
 E glutamate           6.5         17           2
 F phenylalanine       0.8          2           1
 G glycine            12.5         33           2
 H histidine           3.0          8           1
 I isoleucine          1.9          5           1
 K lysine              2.7          7           1
 L leucine            12.9         34           2
 M methionine          1.1          3           1
 N asparagine          1.5          4           1
 P proline             8.0         21           3
 Q glutamine           5.3         14           1
 R arginine            7.6         20           2
 S serine              6.5         17           3
 T threonine           4.6         12           1
 V valine              4.9         13           2
 W tryptophan          2.3          6           1
 Y tyrosine            4.6         12           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   splA/ryanodine receptor domain and SOCS box contain... 
SPSB2                 1.000   splA/ryanodine receptor domain and SOCS box containi...
SPSB2                 0.841   splA/ryanodine receptor domain and SOCS box contain...
SPSB4                 0.463   splA/ryanodine receptor domain and SOCS box containi...
SPSB1                 0.446   splA/ryanodine receptor domain and SOCS box containi...
FBXO45                0.258   F-box protein 45 
SPSB3                 0.055   splA/ryanodine receptor domain and SOCS box containi...
ASB1                  0.031   ankyrin repeat and SOCS box-containing protein 1 [Ho...
DDX1                  0.029   DEAD (Asp-Glu-Ala-Asp) box polypeptide 1 
ASB15                 0.027   ankyrin repeat and SOCS box-containing 15 
ASB3                  0.027   ankyrin repeat and SOCS box-containing protein 3 iso...
ASB3                  0.027   ankyrin repeat and SOCS box-containing protein 3 isof...
ASB2                  0.025   ankyrin repeat and SOCS box-containing protein 2 [Ho...
TRIM9                 0.025   tripartite motif protein 9 isoform 1 
ASB16                 0.023   ankyrin repeat and SOCS box-containing protein 16 [H...
ASB11                 0.019   ankyrin repeat and SOCS box-containing protein 11 is...
ASB11                 0.019   ankyrin repeat and SOCS box-containing protein 11 is...
ASB10                 0.019   ankyrin repeat and SOCS box-containing 10 isoform 2...
ASB10                 0.019   ankyrin repeat and SOCS box-containing 10 isoform 1...
ASB10                 0.019   ankyrin repeat and SOCS box-containing 10 isoform 3...
HERC1                 0.017   guanine nucleotide exchange factor p532 
TRIM14                0.015   tripartite motif protein TRIM14 isoform alpha 
TRIM14                0.015   tripartite motif protein TRIM14 isoform alpha 
TRIM14                0.015   tripartite motif protein TRIM14 isoform alpha 
ASB4                  0.015   ankyrin repeat and SOCS box-containing protein 4 isof...
ASB14                 0.013   ankyrin repeat and SOCS box-containing 14 isoform 1...
ASB14                 0.013   ankyrin repeat and SOCS box-containing 14 isoform 2 ...
LOC100292164          0.011   PREDICTED: hypothetical protein 
TRIM41                0.011   tripartite motif-containing 41 isoform 1 
TRIM67                0.011   tripartite motif-containing 67 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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