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Search of human proteins with 157743243
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|157743243 phospholipase A2, group IIC [Homo sapiens]
(150 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|157743243 phospholipase A2, group IIC [Homo sapiens] 331 2e-91
gi|6912596 phospholipase A2, group IID [Homo sapiens] 80 5e-16
gi|239915991 phospholipase A2, group IIA precursor [Homo sapiens] 80 8e-16
gi|239915987 phospholipase A2, group IIA precursor [Homo sapiens] 80 8e-16
gi|239915985 phospholipase A2, group IIA precursor [Homo sapiens] 80 8e-16
gi|4505849 phospholipase A2, group IIA precursor [Homo sapiens] 80 8e-16
gi|7657461 phospholipase A2, group IIE [Homo sapiens] 79 2e-15
gi|145553989 phospholipase A2, group IIF [Homo sapiens] 76 9e-15
gi|4505853 phospholipase A2, group V precursor [Homo sapiens] 76 1e-14
gi|4505847 phospholipase A2 group IB [Homo sapiens] 68 3e-12
gi|4505845 phospholipase A2, group X [Homo sapiens] 57 8e-09
gi|223029412 otoconin 90 [Homo sapiens] 42 1e-04
gi|148747866 heparan sulfate 6-O-sulfotransferase 1 [Homo sapiens] 34 0.053
gi|237858698 RPA interacting protein isoform a [Homo sapiens] 32 0.20
gi|133922609 hypothetical protein LOC23383 [Homo sapiens] 32 0.26
gi|53832011 calcium channel, voltage-dependent, T type, alpha 1H... 31 0.45
gi|53832009 calcium channel, voltage-dependent, T type, alpha 1H... 31 0.45
gi|119703755 laminin, beta 2 precursor [Homo sapiens] 30 0.76
gi|239754668 PREDICTED: mucin 12 [Homo sapiens] 29 1.3
gi|89026265 PREDICTED: mucin 12 [Homo sapiens] 29 1.3
gi|239743293 PREDICTED: mucin 12 [Homo sapiens] 29 1.3
gi|239508976 PREDICTED: mucin 12, cell surface associated [Homo ... 29 1.3
gi|237858695 RPA interacting protein isoform b [Homo sapiens] 29 1.3
gi|134031945 SCO-spondin [Homo sapiens] 29 1.7
gi|224451124 neurobeachin-like 1 isoform 3 [Homo sapiens] 28 2.2
gi|154240744 neurobeachin-like 1 isoform 2 [Homo sapiens] 28 2.2
gi|149944613 neurobeachin-like 1 isoform 1 [Homo sapiens] 28 2.2
gi|56237021 fibrillin 3 precursor [Homo sapiens] 28 2.2
gi|41327708 crumbs homolog 1 precursor [Homo sapiens] 28 2.2
gi|88758596 TEK tyrosine kinase, endothelial precursor [Homo sap... 28 2.9
>gi|157743243 phospholipase A2, group IIC [Homo sapiens]
Length = 150
Score = 331 bits (848), Expect = 2e-91
Identities = 150/150 (100%), Positives = 150/150 (100%)
Query: 1 MLIATSFFLFFSSVVAAPTHSSFWQFQRRVKHITGRSAFFSYYGYGCYCGLGDKGIPVDD 60
MLIATSFFLFFSSVVAAPTHSSFWQFQRRVKHITGRSAFFSYYGYGCYCGLGDKGIPVDD
Sbjct: 1 MLIATSFFLFFSSVVAAPTHSSFWQFQRRVKHITGRSAFFSYYGYGCYCGLGDKGIPVDD 60
Query: 61 TDSPSSPSPYEKLKEFSCQPVLNSYQFHIVNGAVVCGCTLGPGASCHCRLKACECDKQSV 120
TDSPSSPSPYEKLKEFSCQPVLNSYQFHIVNGAVVCGCTLGPGASCHCRLKACECDKQSV
Sbjct: 61 TDSPSSPSPYEKLKEFSCQPVLNSYQFHIVNGAVVCGCTLGPGASCHCRLKACECDKQSV 120
Query: 121 HCFKESLPTYEKNFKQFSSQPRCGRHKPWC 150
HCFKESLPTYEKNFKQFSSQPRCGRHKPWC
Sbjct: 121 HCFKESLPTYEKNFKQFSSQPRCGRHKPWC 150
>gi|6912596 phospholipase A2, group IID [Homo sapiens]
Length = 145
Score = 80.5 bits (197), Expect = 5e-16
Identities = 42/135 (31%), Positives = 61/135 (45%), Gaps = 8/135 (5%)
Query: 18 PTHSSFWQFQRRVKHITGRSAFFSYYGYGCYCGLGDKGIPVDDTD--SPSSPSPYEKLKE 75
P + VK +TG+ SY+ YGC+CGLG +G P D TD + Y+ LK
Sbjct: 17 PIQGGILNLNKMVKQVTGKMPILSYWPYGCHCGLGGRGQPKDATDWCCQTHDCCYDHLKT 76
Query: 76 FSCQPVLNSYQFHIVNGAVVCGCTLGPGASCHCRLKACECDKQSVHCFKESLPTYEKNFK 135
C + Y+++ G + C C + C CDK+ C K +L TY+K +
Sbjct: 77 QGCSIYKDYYRYNFSQGNIHCS-----DKGSWCEQQLCACDKEVAFCLKRNLDTYQKRLR 131
Query: 136 QFSSQPRCGRHKPWC 150
F +P C P C
Sbjct: 132 -FYWRPHCRGQTPGC 145
>gi|239915991 phospholipase A2, group IIA precursor [Homo sapiens]
Length = 144
Score = 79.7 bits (195), Expect = 8e-16
Identities = 44/132 (33%), Positives = 63/132 (47%), Gaps = 14/132 (10%)
Query: 20 HSSFWQFQRRVKHITGRSAFFSYYGYGCYCGLGDKGIPVDDTD--SPSSPSPYEKLKEFS 77
H + F R +K TG+ A SY YGC+CG+G +G P D TD + Y++L++
Sbjct: 19 HGNLVNFHRMIKLTTGKEAALSYGFYGCHCGVGGRGSPKDATDRCCVTHDCCYKRLEKRG 78
Query: 78 CQPVLNSYQFHIVNGAVVCGCTLGPGASCHCRLKACECDKQSVHCFKESLPTYEKNFKQF 137
C SY+F + C CR + CECDK + CF + TY K ++ +
Sbjct: 79 CGTKFLSYKFSNSGSRITC------AKQDSCRSQLCECDKAAATCFARNKTTYNKKYQYY 132
Query: 138 S------SQPRC 143
S S PRC
Sbjct: 133 SNKHCRGSTPRC 144
>gi|239915987 phospholipase A2, group IIA precursor [Homo sapiens]
Length = 144
Score = 79.7 bits (195), Expect = 8e-16
Identities = 44/132 (33%), Positives = 63/132 (47%), Gaps = 14/132 (10%)
Query: 20 HSSFWQFQRRVKHITGRSAFFSYYGYGCYCGLGDKGIPVDDTD--SPSSPSPYEKLKEFS 77
H + F R +K TG+ A SY YGC+CG+G +G P D TD + Y++L++
Sbjct: 19 HGNLVNFHRMIKLTTGKEAALSYGFYGCHCGVGGRGSPKDATDRCCVTHDCCYKRLEKRG 78
Query: 78 CQPVLNSYQFHIVNGAVVCGCTLGPGASCHCRLKACECDKQSVHCFKESLPTYEKNFKQF 137
C SY+F + C CR + CECDK + CF + TY K ++ +
Sbjct: 79 CGTKFLSYKFSNSGSRITC------AKQDSCRSQLCECDKAAATCFARNKTTYNKKYQYY 132
Query: 138 S------SQPRC 143
S S PRC
Sbjct: 133 SNKHCRGSTPRC 144
>gi|239915985 phospholipase A2, group IIA precursor [Homo sapiens]
Length = 144
Score = 79.7 bits (195), Expect = 8e-16
Identities = 44/132 (33%), Positives = 63/132 (47%), Gaps = 14/132 (10%)
Query: 20 HSSFWQFQRRVKHITGRSAFFSYYGYGCYCGLGDKGIPVDDTD--SPSSPSPYEKLKEFS 77
H + F R +K TG+ A SY YGC+CG+G +G P D TD + Y++L++
Sbjct: 19 HGNLVNFHRMIKLTTGKEAALSYGFYGCHCGVGGRGSPKDATDRCCVTHDCCYKRLEKRG 78
Query: 78 CQPVLNSYQFHIVNGAVVCGCTLGPGASCHCRLKACECDKQSVHCFKESLPTYEKNFKQF 137
C SY+F + C CR + CECDK + CF + TY K ++ +
Sbjct: 79 CGTKFLSYKFSNSGSRITC------AKQDSCRSQLCECDKAAATCFARNKTTYNKKYQYY 132
Query: 138 S------SQPRC 143
S S PRC
Sbjct: 133 SNKHCRGSTPRC 144
>gi|4505849 phospholipase A2, group IIA precursor [Homo sapiens]
Length = 144
Score = 79.7 bits (195), Expect = 8e-16
Identities = 44/132 (33%), Positives = 63/132 (47%), Gaps = 14/132 (10%)
Query: 20 HSSFWQFQRRVKHITGRSAFFSYYGYGCYCGLGDKGIPVDDTD--SPSSPSPYEKLKEFS 77
H + F R +K TG+ A SY YGC+CG+G +G P D TD + Y++L++
Sbjct: 19 HGNLVNFHRMIKLTTGKEAALSYGFYGCHCGVGGRGSPKDATDRCCVTHDCCYKRLEKRG 78
Query: 78 CQPVLNSYQFHIVNGAVVCGCTLGPGASCHCRLKACECDKQSVHCFKESLPTYEKNFKQF 137
C SY+F + C CR + CECDK + CF + TY K ++ +
Sbjct: 79 CGTKFLSYKFSNSGSRITC------AKQDSCRSQLCECDKAAATCFARNKTTYNKKYQYY 132
Query: 138 S------SQPRC 143
S S PRC
Sbjct: 133 SNKHCRGSTPRC 144
>gi|7657461 phospholipase A2, group IIE [Homo sapiens]
Length = 142
Score = 78.6 bits (192), Expect = 2e-15
Identities = 43/142 (30%), Positives = 68/142 (47%), Gaps = 9/142 (6%)
Query: 9 LFFSSVVAAPTHSSFWQFQRRVKHITGRSAFFSYYGYGCYCGLGDKGIPVDDTD--SPSS 66
L F ++ A + QF ++ +TG+SA Y YGCYCG+G PVD TD +
Sbjct: 7 LVFLCLLVALVTGNLVQFGVMIEKMTGKSAL-QYNDYGCYCGIGGSHWPVDQTDWCCHAH 65
Query: 67 PSPYEKLKEFSCQPVLNSYQFHIVNGAVVCGCTLGPGASCHCRLKACECDKQSVHCFKES 126
Y +L++ C+P L Y F + + C C+ CECDK++ CF+ +
Sbjct: 66 DCCYGRLEKLGCEPKLEKYLFSVSERGIFCA------GRTTCQRLTCECDKRAALCFRRN 119
Query: 127 LPTYEKNFKQFSSQPRCGRHKP 148
L TY + + + ++ G P
Sbjct: 120 LGTYNRKYAHYPNKLCTGPTPP 141
>gi|145553989 phospholipase A2, group IIF [Homo sapiens]
Length = 211
Score = 76.3 bits (186), Expect = 9e-15
Identities = 44/142 (30%), Positives = 64/142 (45%), Gaps = 13/142 (9%)
Query: 15 VAAPTHSSFWQFQRRVKHITGRSAFFSYYGYGCYCGLGDKGIPVDDTD--SPSSPSPYEK 72
V + H S + V+ +TGRSA S+ GYGCYCGLG +G P D+ D + Y++
Sbjct: 57 VLSTAHGSLLNLKAMVEAVTGRSAILSFVGYGCYCGLGGRGQPKDEVDWCCHAHDCCYQE 116
Query: 73 LKEFSCQPVLNSYQFHIVNGAVVCGCTLGPGASCHCRLKACECDKQSVHCFKESLPTYEK 132
L + C P ++ Y I N + L C + C CDK V C TY +
Sbjct: 117 LFDQGCHPYVDHYDHTIENNTEIVCSDLN---KTECDKQTCMCDKNMVLCLMNQ--TYRE 171
Query: 133 NFKQF------SSQPRCGRHKP 148
++ F P C ++P
Sbjct: 172 EYRGFLNVYCQGPTPNCSIYEP 193
>gi|4505853 phospholipase A2, group V precursor [Homo sapiens]
Length = 138
Score = 75.9 bits (185), Expect = 1e-14
Identities = 39/110 (35%), Positives = 58/110 (52%), Gaps = 8/110 (7%)
Query: 30 VKHITGRSAFFSYYGYGCYCGLGDKGIPVDDTD--SPSSPSPYEKLKEFSCQPVLNSYQF 87
++ +TG++A +Y YGCYCG G +G P D TD + Y +L+E C SY++
Sbjct: 29 IEKVTGKNALTNYGFYGCYCGWGGRGTPKDGTDWCCWAHDHCYGRLEEKGCNIRTQSYKY 88
Query: 88 HIVNGAVVCGCTLGPGASCHCRLKACECDKQSVHCFKESLPTYEKNFKQF 137
G V C PG CH L C CD++ V+C K +L +Y ++ F
Sbjct: 89 RFAWGVVTC----EPGPFCHVNL--CACDRKLVYCLKRNLRSYNPQYQYF 132
>gi|4505847 phospholipase A2 group IB [Homo sapiens]
Length = 148
Score = 68.2 bits (165), Expect = 3e-12
Identities = 41/151 (27%), Positives = 69/151 (45%), Gaps = 16/151 (10%)
Query: 2 LIATSFFLFFSSVVAAPTHSSFWQFQRRVKH-ITGRSAFFSYYGYGCYCGLGDKGIPVDD 60
L+ + L ++ + + + WQF++ +K I G F Y YGCYCGLG G PVD+
Sbjct: 3 LLVLAVLLTVAAADSGISPRAVWQFRKMIKCVIPGSDPFLEYNNYGCYCGLGGSGTPVDE 62
Query: 61 TDS--PSSPSPYEKLKEF-SCQ-----PVLNSYQFHIVNGAVVCGCTLGPGASCHCRLKA 112
D + + Y++ K+ SC+ P ++Y + A+ C + C
Sbjct: 63 LDKCCQTHDNCYDQAKKLDSCKFLLDNPYTHTYSYSCSGSAITCS-----SKNKECEAFI 117
Query: 113 CECDKQSVHCFKESLPTYEKNFKQFSSQPRC 143
C CD+ + CF ++ Y K K ++ C
Sbjct: 118 CNCDRNAAICFSKA--PYNKAHKNLDTKKYC 146
>gi|4505845 phospholipase A2, group X [Homo sapiens]
Length = 165
Score = 56.6 bits (135), Expect = 8e-09
Identities = 36/113 (31%), Positives = 50/113 (44%), Gaps = 12/113 (10%)
Query: 41 SYYGYGCYCGLGDKGIPVDDTD--SPSSPSPYEKLKEFSCQPVLNSYQFHIVNGAVVCGC 98
+Y YGC+CGLG G P D D Y + +E C P Y + VN +V+CG
Sbjct: 61 AYMKYGCFCGLGGHGQPRDAIDWCCHGHDCCYTRAEEAGCSPKTERYSWQCVNQSVLCG- 119
Query: 99 TLGPGASCHCRLKACECDKQSVHCFKESLPTYEKNFKQ-FSSQPRCGRHKPWC 150
A C+ C+CD++ +C ++ E N K F Q C P C
Sbjct: 120 ----PAENKCQELLCKCDQEIANCLAQT----EYNLKYLFYPQFLCEPDSPKC 164
>gi|223029412 otoconin 90 [Homo sapiens]
Length = 477
Score = 42.4 bits (98), Expect = 1e-04
Identities = 25/86 (29%), Positives = 39/86 (45%), Gaps = 10/86 (11%)
Query: 45 YGCYCGLGDKGIPVDDTDSP--SSPSPYEKLKEFSC--QPVLNSYQFHIVNGAVVCGCTL 100
YGC C +G+PVD++DS YE+ E C P S + + V+ ++C
Sbjct: 97 YGCTCRFEMEGLPVDESDSCCFQHRRCYEEAAEMDCLQDPAKLSTEVNCVSKKIIC---- 152
Query: 101 GPGASCHCRLKACECDKQSVHCFKES 126
+ +C C CDK ++ C S
Sbjct: 153 --ESKDNCEHLLCTCDKAAIECLARS 176
Score = 33.1 bits (74), Expect = 0.090
Identities = 25/84 (29%), Positives = 34/84 (40%), Gaps = 9/84 (10%)
Query: 42 YYGYGCYCGLGDKGIPVDDTD--SPSSPSPYEKLKEFSCQPVLNSYQFHIVNGAVVC-GC 98
+ YGCYCG +G P DD D S E+++ C +L + VVC
Sbjct: 323 FESYGCYCGQEGRGEPRDDLDRCCLSHHCCLEQVRRLGC--LLERLPW----SPVVCVDH 376
Query: 99 TLGPGASCHCRLKACECDKQSVHC 122
T G C C CD+ + C
Sbjct: 377 TPKCGGQSLCEKLLCACDQTAAEC 400
>gi|148747866 heparan sulfate 6-O-sulfotransferase 1 [Homo sapiens]
Length = 411
Score = 33.9 bits (76), Expect = 0.053
Identities = 34/126 (26%), Positives = 46/126 (36%), Gaps = 21/126 (16%)
Query: 40 FSYYGYGCYCGLGDKGIPVDDTDSPSSPSP-YEKLKEFSCQPVLNSYQFHIVNGAVVC-- 96
+ Y G G G P DD D +P P YEK F + + S +F + V+
Sbjct: 33 YQYAGPGLSLGAPGGRAPPDDLDLFPTPDPHYEKKYYFPVRELERSLRFDMKGDDVIVFL 92
Query: 97 ------GCTLGPGASCHCRLKA-CECDKQSVHCFKESLPTYEKN------FKQFSSQPRC 143
G T G + RL+ C+C C Y N F +FS+ C
Sbjct: 93 HIQKTGGTTFGRHLVQNVRLEVPCDCRPGQKKC-----TCYRPNRRETWLFSRFSTGWSC 147
Query: 144 GRHKPW 149
G H W
Sbjct: 148 GLHADW 153
>gi|237858698 RPA interacting protein isoform a [Homo sapiens]
Length = 231
Score = 32.0 bits (71), Expect = 0.20
Identities = 27/88 (30%), Positives = 35/88 (39%), Gaps = 18/88 (20%)
Query: 80 PVLNSYQFHIVNGAVVCGCTLG-PGASCHC---RLKAC---ECDKQSVHC-----FKESL 127
PV Y I +G VVC C L P S +L+AC ++ S HC F +
Sbjct: 138 PVCTKYNLRITSGVVVCQCGLSIPSHSSELTEQKLRACLEGSINEHSAHCPHTPEFSVTG 197
Query: 128 PTYEKN------FKQFSSQPRCGRHKPW 149
T EK+ S P CG+ W
Sbjct: 198 GTEEKSSLLMSCLVSVSWDPLCGKRDLW 225
>gi|133922609 hypothetical protein LOC23383 [Homo sapiens]
Length = 613
Score = 31.6 bits (70), Expect = 0.26
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 71 EKLKEFSCQPVLNSYQFHIVNGAVVCGCTLGPGASCHCRL-KACECDKQSVHCF 123
EKLK C P+L+S+Q ++ ++C G A+ + + C+ +QS F
Sbjct: 321 EKLKMLDCSPILSSFQVILLEHIIMCRLVTGHKATALQEISQVCQLCQQSPRLF 374
>gi|53832011 calcium channel, voltage-dependent, T type, alpha 1H
subunit isoform b [Homo sapiens]
Length = 2347
Score = 30.8 bits (68), Expect = 0.45
Identities = 16/51 (31%), Positives = 23/51 (45%)
Query: 63 SPSSPSPYEKLKEFSCQPVLNSYQFHIVNGAVVCGCTLGPGASCHCRLKAC 113
S +SP PYEK+ + L H+ +V C P + C LK+C
Sbjct: 650 SLNSPDPYEKIPHVVGEHGLGQAPGHLSGLSVPCPLPSPPAGTLTCELKSC 700
>gi|53832009 calcium channel, voltage-dependent, T type, alpha 1H
subunit isoform a [Homo sapiens]
Length = 2353
Score = 30.8 bits (68), Expect = 0.45
Identities = 16/51 (31%), Positives = 23/51 (45%)
Query: 63 SPSSPSPYEKLKEFSCQPVLNSYQFHIVNGAVVCGCTLGPGASCHCRLKAC 113
S +SP PYEK+ + L H+ +V C P + C LK+C
Sbjct: 650 SLNSPDPYEKIPHVVGEHGLGQAPGHLSGLSVPCPLPSPPAGTLTCELKSC 700
>gi|119703755 laminin, beta 2 precursor [Homo sapiens]
Length = 1798
Score = 30.0 bits (66), Expect = 0.76
Identities = 18/52 (34%), Positives = 22/52 (42%), Gaps = 5/52 (9%)
Query: 64 PSSPSPYEKLKEFSCQPVLNSYQFHIVNGAVVCGCTLGPGASCHCRLKACEC 115
PS SP E +C P+L S I NGA+ C C S C +C
Sbjct: 756 PSKTSPSE-----ACAPLLISLSTLIYNGALPCQCNPQGSLSSECNPHGGQC 802
>gi|239754668 PREDICTED: mucin 12 [Homo sapiens]
Length = 1952
Score = 29.3 bits (64), Expect = 1.3
Identities = 20/78 (25%), Positives = 34/78 (43%), Gaps = 6/78 (7%)
Query: 59 DDTDSPSSPSPYEKLKEFSCQPVLNSY-QFH---IVNGAVVC--GCTLGPGASCHCRLKA 112
+DT SS +P +E Q Y QF+ +++G + C CT G + +C L
Sbjct: 1760 EDTFVDSSVTPGFDFQEQCTQKAAEGYTQFYYVDVLDGKLACVNKCTKGTKSQMNCNLGT 1819
Query: 113 CECDKQSVHCFKESLPTY 130
C+ + C + T+
Sbjct: 1820 CQLQRSGPRCLCPNTNTH 1837
>gi|89026265 PREDICTED: mucin 12 [Homo sapiens]
Length = 978
Score = 29.3 bits (64), Expect = 1.3
Identities = 20/78 (25%), Positives = 34/78 (43%), Gaps = 6/78 (7%)
Query: 59 DDTDSPSSPSPYEKLKEFSCQPVLNSY-QFH---IVNGAVVC--GCTLGPGASCHCRLKA 112
+DT SS +P +E Q Y QF+ +++G + C CT G + +C L
Sbjct: 789 EDTFVDSSVTPGFDFQEQCTQKAAEGYTQFYYVDVLDGKLACVNKCTKGTKSQMNCNLGT 848
Query: 113 CECDKQSVHCFKESLPTY 130
C+ + C + T+
Sbjct: 849 CQLQRSGPRCLCPNTNTH 866
>gi|239743293 PREDICTED: mucin 12 [Homo sapiens]
Length = 5478
Score = 29.3 bits (64), Expect = 1.3
Identities = 20/78 (25%), Positives = 34/78 (43%), Gaps = 6/78 (7%)
Query: 59 DDTDSPSSPSPYEKLKEFSCQPVLNSY-QFH---IVNGAVVC--GCTLGPGASCHCRLKA 112
+DT SS +P +E Q Y QF+ +++G + C CT G + +C L
Sbjct: 5286 EDTFVDSSVTPGFDFQEQCTQKAAEGYTQFYYVDVLDGKLACVNKCTKGTKSQMNCNLGT 5345
Query: 113 CECDKQSVHCFKESLPTY 130
C+ + C + T+
Sbjct: 5346 CQLQRSGPRCLCPNTNTH 5363
>gi|239508976 PREDICTED: mucin 12, cell surface associated [Homo
sapiens]
Length = 2036
Score = 29.3 bits (64), Expect = 1.3
Identities = 20/78 (25%), Positives = 34/78 (43%), Gaps = 6/78 (7%)
Query: 59 DDTDSPSSPSPYEKLKEFSCQPVLNSY-QFH---IVNGAVVC--GCTLGPGASCHCRLKA 112
+DT SS +P +E Q Y QF+ +++G + C CT G + +C L
Sbjct: 1723 EDTFVDSSVTPGFDFQEQCTQKAAEGYTQFYYVDVLDGKLACVNKCTKGTKSQMNCNLGT 1782
Query: 113 CECDKQSVHCFKESLPTY 130
C+ + C + T+
Sbjct: 1783 CQLQRSGPRCLCPNTNTH 1800
>gi|237858695 RPA interacting protein isoform b [Homo sapiens]
Length = 219
Score = 29.3 bits (64), Expect = 1.3
Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 7/50 (14%)
Query: 80 PVLNSYQFHIVNGAVVCGCTLG-PGASCHC---RLKAC---ECDKQSVHC 122
PV Y I +G VVC C L P S +L+AC ++ S HC
Sbjct: 138 PVCTKYNLRITSGVVVCQCGLSIPSHSSELTEQKLRACLEGSINEHSAHC 187
>gi|134031945 SCO-spondin [Homo sapiens]
Length = 5147
Score = 28.9 bits (63), Expect = 1.7
Identities = 12/30 (40%), Positives = 14/30 (46%)
Query: 93 AVVCGCTLGPGASCHCRLKACECDKQSVHC 122
A G TL PG K CEC + +HC
Sbjct: 4485 AAGAGMTLAPGDRLQLGCKECECRRGELHC 4514
>gi|224451124 neurobeachin-like 1 isoform 3 [Homo sapiens]
Length = 2694
Score = 28.5 bits (62), Expect = 2.2
Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Query: 49 CGLGDKGIPVDDTDSPSSPSPYEKLKEFS 77
C + D G V D+ PS+PSP E K FS
Sbjct: 1381 CEMSDSGSQVPDS-LPSTPSPVESTKSFS 1408
>gi|154240744 neurobeachin-like 1 isoform 2 [Homo sapiens]
Length = 1335
Score = 28.5 bits (62), Expect = 2.2
Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Query: 49 CGLGDKGIPVDDTDSPSSPSPYEKLKEFS 77
C + D G V D+ PS+PSP E K FS
Sbjct: 91 CEMSDSGSQVPDS-LPSTPSPVESTKSFS 118
>gi|149944613 neurobeachin-like 1 isoform 1 [Homo sapiens]
Length = 1404
Score = 28.5 bits (62), Expect = 2.2
Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Query: 49 CGLGDKGIPVDDTDSPSSPSPYEKLKEFS 77
C + D G V D+ PS+PSP E K FS
Sbjct: 91 CEMSDSGSQVPDS-LPSTPSPVESTKSFS 118
>gi|56237021 fibrillin 3 precursor [Homo sapiens]
Length = 2809
Score = 28.5 bits (62), Expect = 2.2
Identities = 21/88 (23%), Positives = 32/88 (36%), Gaps = 18/88 (20%)
Query: 44 GYGCYCGLGDKGIPVDDTDSPSSPSPYEKLKEFSCQPVLNSYQFHIVNGAVVCGCTLG-- 101
G+ C C D P E + E S P+L +++ H G+ +C C G
Sbjct: 2147 GFECACA---------DGFEPGLMMTCEDIDECSLNPLLCAFRCHNTEGSYLCTCPAGYT 2197
Query: 102 ---PGASC----HCRLKACECDKQSVHC 122
GA C C +C + + C
Sbjct: 2198 LREDGAMCRDVDECADGQQDCHARGMEC 2225
>gi|41327708 crumbs homolog 1 precursor [Homo sapiens]
Length = 1406
Score = 28.5 bits (62), Expect = 2.2
Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 5/65 (7%)
Query: 27 QRRVKHITGRSAFFSYY---GYGCYCGLGDKGIPVDDTDSPSSPSPYEKLKEFSCQPVLN 83
+++ ITG + FSY+ GY C C G GI ++ + S +P + +C+ +
Sbjct: 360 EKQYGRITGLPSSFSYHEASGYVCICQPGFTGIHCEEDVNECSSNPCQ--NGGTCENLPG 417
Query: 84 SYQFH 88
+Y H
Sbjct: 418 NYTCH 422
>gi|88758596 TEK tyrosine kinase, endothelial precursor [Homo
sapiens]
Length = 1124
Score = 28.1 bits (61), Expect = 2.9
Identities = 21/86 (24%), Positives = 30/86 (34%), Gaps = 26/86 (30%)
Query: 45 YGCYCGLGDKGIPVDDTDSPSSPSPYEKLKEFSCQPVLNSYQFHIVNGAVVCGCTLGPGA 104
YGC C G KG+ ++ P P KL+ C+ G
Sbjct: 285 YGCSCATGWKGLQCNEACHPGFYGPDCKLR-----------------------CSCNNGE 321
Query: 105 SCHCRLKACECDK--QSVHCFKESLP 128
C R + C C Q + C +E +P
Sbjct: 322 MCD-RFQGCLCSPGWQGLQCEREGIP 346
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.325 0.138 0.475
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,885,483
Number of Sequences: 37866
Number of extensions: 333854
Number of successful extensions: 1033
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 985
Number of HSP's gapped (non-prelim): 52
length of query: 150
length of database: 18,247,518
effective HSP length: 93
effective length of query: 57
effective length of database: 14,725,980
effective search space: 839380860
effective search space used: 839380860
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.