Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: KIAA0892 Sequence: fasta or formatted (613aa) NCBI GI: 133922609
Description:

hypothetical protein LOC23383

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.3         63           5
 C cysteine            3.1         19           1
 D aspartate           3.1         19           2
 E glutamate           5.5         34           1
 F phenylalanine       3.9         24           2
 G glycine             3.3         20           1
 H histidine           4.6         28           2
 I isoleucine          3.8         23           2
 K lysine              4.1         25           1
 L leucine            14.7         90           3
 M methionine          2.6         16           1
 N asparagine          3.9         24           2
 P proline             4.1         25           3
 Q glutamine           8.3         51           2
 R arginine            4.1         25           1
 S serine              7.0         43           2
 T threonine           3.9         24           2
 V valine              5.9         36           2
 W tryptophan          1.3          8           1
 Y tyrosine            2.6         16           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC23383 
SMCHD1                0.006   structural maintenance of chromosomes flexible hing...
TMTC2                 0.006   transmembrane and tetratricopeptide repeat containin...
PLA2G2C               0.006   phospholipase A2, group IIC 
TTC21A                0.005   tetratricopeptide repeat domain 21A isoform 1 [Homo...
TTC21A                0.005   tetratricopeptide repeat domain 21A isoform 2 [Homo...
TMTC1                 0.005   transmembrane and tetratricopeptide repeat containin...
ADCY10                0.005   adenylate cyclase 10 
USP1                  0.005   ubiquitin specific protease 1 
USP1                  0.005   ubiquitin specific protease 1 
USP1                  0.005   ubiquitin specific protease 1 
SLIT1                 0.004   slit homolog 1 
FARP1                 0.004   FERM, RhoGEF, and pleckstrin domain protein 1 isoform...
CEP250                0.004   centrosomal protein 2 
NKX6-1                0.004   NK6 transcription factor related, locus 1 
CAPZA3                0.004   capping protein alpha 3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press