Guide to the Human Genome
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Name: TTC21A Sequence: fasta or formatted (1320aa) NCBI GI: 157502177
Description:

tetratricopeptide repeat domain 21A isoform 2

Referenced in:

Additional Structural Proteins
Tetratricopeptide Domains

Other entries for this name:
alt prot [1321aa] tetratricopeptide repeat domain 21A isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.5        112           3
 C cysteine            2.2         29           2
 D aspartate           4.2         55           1
 E glutamate           8.6        113           3
 F phenylalanine       3.1         41           2
 G glycine             4.2         55           2
 H histidine           3.3         44           2
 I isoleucine          5.7         75           2
 K lysine              8.0        105           2
 L leucine            13.7        181           4
 M methionine          2.8         37           2
 N asparagine          3.4         45           1
 P proline             3.6         47           1
 Q glutamine           5.3         70           2
 R arginine            4.4         58           2
 S serine              5.5         73           2
 T threonine           3.0         39           2
 V valine              5.5         73           2
 W tryptophan          0.7          9           1
 Y tyrosine            4.5         59           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   tetratricopeptide repeat domain 21A isoform 2 [Homo... 
TTC21A                0.998   tetratricopeptide repeat domain 21A isoform 1 [Homo...
TTC21B                0.517   tetratricopeptide repeat domain 21B 
CTR9                  0.010   SH2 domain binding protein 1 
BBS4                  0.010   Bardet-Biedl syndrome 4 
TMTC1                 0.010   transmembrane and tetratricopeptide repeat containin...
OGT                   0.008   O-linked GlcNAc transferase isoform 2 
OGT                   0.008   O-linked GlcNAc transferase isoform 1 
NPHP3                 0.007   nephrocystin 3 
TMTC2                 0.007   transmembrane and tetratricopeptide repeat containin...
CDC27                 0.007   cell division cycle protein 27 isoform 1 
CDC27                 0.007   cell division cycle protein 27 isoform 2 
DNAJC3                0.006   DnaJ (Hsp40) homolog, subfamily C, member 3 
STIP1                 0.005   stress-induced-phosphoprotein 1 (Hsp70/Hsp90-organizi...
CDC23                 0.005   cell division cycle protein 23 
TMTC3                 0.005   transmembrane and tetratricopeptide repeat containi...
TTC7A                 0.005   tetratricopeptide repeat domain 7A 
MAP1A                 0.005   microtubule-associated protein 1A 
NARG1                 0.005   NMDA receptor regulated 1 
RPAP3                 0.004   RNA polymerase II associated protein 3 isoform 2 [H...
RPAP3                 0.004   RNA polymerase II associated protein 3 isoform 1 [H...
IFT88                 0.004   intraflagellar transport 88 homolog isoform 1 
IFT88                 0.004   intraflagellar transport 88 homolog isoform 2 
RAPSN                 0.004   43 kD receptor-associated protein of the synapse iso...
ADCY10                0.004   adenylate cyclase 10 
TTC7B                 0.004   tetratricopeptide repeat domain 7B 
FKBP4                 0.003   FK506 binding protein 52 
TTC6                  0.003   PREDICTED: tetratricopeptide repeat domain 6 
TTC6                  0.003   PREDICTED: tetratricopeptide repeat domain 6 
C14orf25              0.003   PREDICTED: chromosome 14 open reading frame 25 [Hom...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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