IFT88 24684

Name: IFT88	Sequence: fasta or formatted (824aa)		NCBI GI: 28329439
Description: intraflagellar transport 88 homolog isoform 2		Referenced in: Kidney Left-Right Axis Additional Structural Proteins Tetratricopeptide Domains
Other entries for this name: alt prot [833aa] intraflagellar transport 88 homolog isoform 1
Composition: Amino acid Percentage Count Longest homopolymer A alanine 9.7 80 3 C cysteine 1.2 10 1 D aspartate 5.9 49 2 E glutamate 8.0 66 2 F phenylalanine 2.7 22 1 G glycine 4.9 40 2 H histidine 0.8 7 1 I isoleucine 5.8 48 1 K lysine 7.6 63 3 L leucine 8.4 69 2 M methionine 2.7 22 2 N asparagine 5.3 44 1 P proline 3.8 31 2 Q glutamine 4.6 38 2 R arginine 5.6 46 2 S serine 7.3 60 3 T threonine 4.4 36 2 V valine 5.0 41 2 W tryptophan 0.6 5 1 Y tyrosine 5.7 47 3			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 intraflagellar transport 88 homolog isoform 2 IFT88 1.000 intraflagellar transport 88 homolog isoform 1 OGT 0.034 O-linked GlcNAc transferase isoform 2 OGT 0.034 O-linked GlcNAc transferase isoform 1 TMTC1 0.025 transmembrane and tetratricopeptide repeat containin... CTR9 0.022 SH2 domain binding protein 1 BBS4 0.021 Bardet-Biedl syndrome 4 CDC23 0.021 cell division cycle protein 23 TTC28 0.020 tetratricopeptide repeat domain 28 STIP1 0.019 stress-induced-phosphoprotein 1 (Hsp70/Hsp90-organizi... TMTC2 0.017 transmembrane and tetratricopeptide repeat containin... TTC37 0.017 tetratricopeptide repeat domain 37 DNAJC7 0.016 DnaJ (Hsp40) homolog, subfamily C, member 7 isoform... TTC13 0.016 tetratricopeptide repeat domain 13 isoform a TTC13 0.016 tetratricopeptide repeat domain 13 isoform b CDC27 0.015 cell division cycle protein 27 isoform 1 CDC27 0.015 cell division cycle protein 27 isoform 2 TTC18 0.014 tetratricopeptide repeat domain 18 TTC6 0.014 PREDICTED: tetratricopeptide repeat domain 6 TTC6 0.014 PREDICTED: tetratricopeptide repeat domain 6 C14orf25 0.014 PREDICTED: chromosome 14 open reading frame 25 [Hom... TMTC3 0.013 transmembrane and tetratricopeptide repeat containi... TTC8 0.012 tetratricopeptide repeat domain 8 isoform A TTC8 0.012 tetratricopeptide repeat domain 8 isoform C TTC8 0.012 tetratricopeptide repeat domain 8 isoform B GPSM2 0.012 LGN protein GTF3C3 0.011 general transcription factor IIIC, polypeptide 3, 102... IFIT5 0.010 interferon-induced protein with tetratricopeptide rep... NARG1L 0.009 NMDA receptor regulated 1-like protein isoform 1 [Ho... NARG1L 0.009 NMDA receptor regulated 1-like protein isoform 3 [H... Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.