Guide to the Human Genome
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Name: IFT88 Sequence: fasta or formatted (824aa) NCBI GI: 28329439
Description:

intraflagellar transport 88 homolog isoform 2

Referenced in:

Kidney
Left-Right Axis
Additional Structural Proteins
Tetratricopeptide Domains

Other entries for this name:
alt prot [833aa] intraflagellar transport 88 homolog isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.7         80           3
 C cysteine            1.2         10           1
 D aspartate           5.9         49           2
 E glutamate           8.0         66           2
 F phenylalanine       2.7         22           1
 G glycine             4.9         40           2
 H histidine           0.8          7           1
 I isoleucine          5.8         48           1
 K lysine              7.6         63           3
 L leucine             8.4         69           2
 M methionine          2.7         22           2
 N asparagine          5.3         44           1
 P proline             3.8         31           2
 Q glutamine           4.6         38           2
 R arginine            5.6         46           2
 S serine              7.3         60           3
 T threonine           4.4         36           2
 V valine              5.0         41           2
 W tryptophan          0.6          5           1
 Y tyrosine            5.7         47           3
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   intraflagellar transport 88 homolog isoform 2 
IFT88                 1.000   intraflagellar transport 88 homolog isoform 1 
OGT                   0.034   O-linked GlcNAc transferase isoform 2 
OGT                   0.034   O-linked GlcNAc transferase isoform 1 
TMTC1                 0.025   transmembrane and tetratricopeptide repeat containin...
CTR9                  0.022   SH2 domain binding protein 1 
BBS4                  0.021   Bardet-Biedl syndrome 4 
CDC23                 0.021   cell division cycle protein 23 
TTC28                 0.020   tetratricopeptide repeat domain 28 
STIP1                 0.019   stress-induced-phosphoprotein 1 (Hsp70/Hsp90-organizi...
TMTC2                 0.017   transmembrane and tetratricopeptide repeat containin...
TTC37                 0.017   tetratricopeptide repeat domain 37 
DNAJC7                0.016   DnaJ (Hsp40) homolog, subfamily C, member 7 isoform...
TTC13                 0.016   tetratricopeptide repeat domain 13 isoform a 
TTC13                 0.016   tetratricopeptide repeat domain 13 isoform b 
CDC27                 0.015   cell division cycle protein 27 isoform 1 
CDC27                 0.015   cell division cycle protein 27 isoform 2 
TTC18                 0.014   tetratricopeptide repeat domain 18 
TTC6                  0.014   PREDICTED: tetratricopeptide repeat domain 6 
TTC6                  0.014   PREDICTED: tetratricopeptide repeat domain 6 
C14orf25              0.014   PREDICTED: chromosome 14 open reading frame 25 [Hom...
TMTC3                 0.013   transmembrane and tetratricopeptide repeat containi...
TTC8                  0.012   tetratricopeptide repeat domain 8 isoform A 
TTC8                  0.012   tetratricopeptide repeat domain 8 isoform C 
TTC8                  0.012   tetratricopeptide repeat domain 8 isoform B 
GPSM2                 0.012   LGN protein 
GTF3C3                0.011   general transcription factor IIIC, polypeptide 3, 102...
IFIT5                 0.010   interferon-induced protein with tetratricopeptide rep...
NARG1L                0.009   NMDA receptor regulated 1-like protein isoform 1 [Ho...
NARG1L                0.009   NMDA receptor regulated 1-like protein isoform 3 [H...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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