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Search of human proteins with 157419130
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|157419130 laminin, alpha 4 isoform 3 precursor [Homo
sapiens]
(120 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|157419130 laminin, alpha 4 isoform 3 precursor [Homo sapiens] 254 1e-68
gi|157419128 laminin, alpha 4 isoform 3 precursor [Homo sapiens] 254 1e-68
gi|157419126 laminin, alpha 4 isoform 2 precursor [Homo sapiens] 135 5e-33
gi|157419124 laminin, alpha 4 isoform 1 precursor [Homo sapiens] 135 5e-33
gi|157419122 laminin, alpha 4 isoform 2 precursor [Homo sapiens] 135 5e-33
gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 34 0.022
gi|169172132 PREDICTED: similar to forkhead box L2 [Homo sapiens] 34 0.022
gi|239743053 PREDICTED: hypothetical protein XP_002342748 [Homo ... 34 0.022
gi|113419423 PREDICTED: similar to forkhead box L2 [Homo sapiens] 34 0.022
gi|21265052 ADAM metallopeptidase with thrombospondin type 1 mot... 34 0.029
gi|110611167 ADAM metallopeptidase with thrombospondin type 1 mo... 34 0.029
gi|4758460 glycoprotein V (platelet) [Homo sapiens] 33 0.038
gi|4885363 goosecoid homeobox 2 [Homo sapiens] 33 0.065
gi|11415052 retinoid X receptor, beta [Homo sapiens] 32 0.085
gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 32 0.085
gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo sapi... 32 0.085
gi|148276998 zinc finger protein 628 [Homo sapiens] 32 0.085
gi|171543895 ataxin 2 [Homo sapiens] 32 0.11
gi|24308073 protein tyrosine phosphatase, non-receptor type 23 [... 32 0.11
gi|111955326 MLX interacting protein [Homo sapiens] 32 0.11
gi|154146199 sal-like 3 [Homo sapiens] 32 0.14
gi|226437579 NAC alpha domain containing [Homo sapiens] 31 0.19
gi|239754540 PREDICTED: NAC alpha domain containing [Homo sapiens] 31 0.19
gi|239749105 PREDICTED: NAC alpha domain containing [Homo sapiens] 31 0.19
gi|239743134 PREDICTED: NAC alpha domain containing [Homo sapiens] 31 0.19
gi|239508792 PREDICTED: NAC alpha domain containing [Homo sapiens] 31 0.19
gi|30410035 late cornified envelope 5A [Homo sapiens] 31 0.19
gi|15812178 zinc finger protein 36, C3H type-like 2 [Homo sapiens] 31 0.19
gi|197245373 proline rich 22 isoform 1 [Homo sapiens] 31 0.25
gi|156071470 hyperpolarization activated cyclic nucleotide-gated... 31 0.25
>gi|157419130 laminin, alpha 4 isoform 3 precursor [Homo sapiens]
Length = 120
Score = 254 bits (648), Expect = 1e-68
Identities = 120/120 (100%), Positives = 120/120 (100%)
Query: 1 MALSSAWRSVLPLWLLWSAACSRAASGDDNAFPFDIEGSSAVGRQDPPETSEPRVALGRL 60
MALSSAWRSVLPLWLLWSAACSRAASGDDNAFPFDIEGSSAVGRQDPPETSEPRVALGRL
Sbjct: 1 MALSSAWRSVLPLWLLWSAACSRAASGDDNAFPFDIEGSSAVGRQDPPETSEPRVALGRL 60
Query: 61 PPAAEVQCPCHCHPAGAPAPPRAVPHSSFSLSPPLSSPQCLESFTWARSVRKLEIKSFPL 120
PPAAEVQCPCHCHPAGAPAPPRAVPHSSFSLSPPLSSPQCLESFTWARSVRKLEIKSFPL
Sbjct: 61 PPAAEVQCPCHCHPAGAPAPPRAVPHSSFSLSPPLSSPQCLESFTWARSVRKLEIKSFPL 120
>gi|157419128 laminin, alpha 4 isoform 3 precursor [Homo sapiens]
Length = 120
Score = 254 bits (648), Expect = 1e-68
Identities = 120/120 (100%), Positives = 120/120 (100%)
Query: 1 MALSSAWRSVLPLWLLWSAACSRAASGDDNAFPFDIEGSSAVGRQDPPETSEPRVALGRL 60
MALSSAWRSVLPLWLLWSAACSRAASGDDNAFPFDIEGSSAVGRQDPPETSEPRVALGRL
Sbjct: 1 MALSSAWRSVLPLWLLWSAACSRAASGDDNAFPFDIEGSSAVGRQDPPETSEPRVALGRL 60
Query: 61 PPAAEVQCPCHCHPAGAPAPPRAVPHSSFSLSPPLSSPQCLESFTWARSVRKLEIKSFPL 120
PPAAEVQCPCHCHPAGAPAPPRAVPHSSFSLSPPLSSPQCLESFTWARSVRKLEIKSFPL
Sbjct: 61 PPAAEVQCPCHCHPAGAPAPPRAVPHSSFSLSPPLSSPQCLESFTWARSVRKLEIKSFPL 120
>gi|157419126 laminin, alpha 4 isoform 2 precursor [Homo sapiens]
Length = 1816
Score = 135 bits (341), Expect = 5e-33
Identities = 65/65 (100%), Positives = 65/65 (100%)
Query: 1 MALSSAWRSVLPLWLLWSAACSRAASGDDNAFPFDIEGSSAVGRQDPPETSEPRVALGRL 60
MALSSAWRSVLPLWLLWSAACSRAASGDDNAFPFDIEGSSAVGRQDPPETSEPRVALGRL
Sbjct: 1 MALSSAWRSVLPLWLLWSAACSRAASGDDNAFPFDIEGSSAVGRQDPPETSEPRVALGRL 60
Query: 61 PPAAE 65
PPAAE
Sbjct: 61 PPAAE 65
>gi|157419124 laminin, alpha 4 isoform 1 precursor [Homo sapiens]
Length = 1823
Score = 135 bits (341), Expect = 5e-33
Identities = 65/65 (100%), Positives = 65/65 (100%)
Query: 1 MALSSAWRSVLPLWLLWSAACSRAASGDDNAFPFDIEGSSAVGRQDPPETSEPRVALGRL 60
MALSSAWRSVLPLWLLWSAACSRAASGDDNAFPFDIEGSSAVGRQDPPETSEPRVALGRL
Sbjct: 1 MALSSAWRSVLPLWLLWSAACSRAASGDDNAFPFDIEGSSAVGRQDPPETSEPRVALGRL 60
Query: 61 PPAAE 65
PPAAE
Sbjct: 61 PPAAE 65
>gi|157419122 laminin, alpha 4 isoform 2 precursor [Homo sapiens]
Length = 1816
Score = 135 bits (341), Expect = 5e-33
Identities = 65/65 (100%), Positives = 65/65 (100%)
Query: 1 MALSSAWRSVLPLWLLWSAACSRAASGDDNAFPFDIEGSSAVGRQDPPETSEPRVALGRL 60
MALSSAWRSVLPLWLLWSAACSRAASGDDNAFPFDIEGSSAVGRQDPPETSEPRVALGRL
Sbjct: 1 MALSSAWRSVLPLWLLWSAACSRAASGDDNAFPFDIEGSSAVGRQDPPETSEPRVALGRL 60
Query: 61 PPAAE 65
PPAAE
Sbjct: 61 PPAAE 65
>gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 1124
Score = 34.3 bits (77), Expect = 0.022
Identities = 21/63 (33%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
Query: 36 IEGSSAVGRQDPPETSEPRVALGRLPPAAEVQCPCHCHPAGAPAPPRAVPHSSFSLSPPL 95
+ S+ Q PP + P + + PPA+ P P AP PP A P SPP
Sbjct: 685 VSPSATPPSQAPPSLAAPPLQVPPSPPASPPMSPSATPPPQAP-PPLAAPPLQVPPSPPA 743
Query: 96 SSP 98
S P
Sbjct: 744 SPP 746
Score = 27.7 bits (60), Expect = 2.1
Identities = 17/66 (25%), Positives = 26/66 (39%), Gaps = 12/66 (18%)
Query: 45 QDPPETSEPRVALGRLPPAAEVQCPCHCHPAGAP------------APPRAVPHSSFSLS 92
Q PP + P + + PPA+ P P P +PP ++P S +
Sbjct: 725 QAPPPLAAPPLQVPPSPPASPPMSPSATPPPRVPPLLAAPPLQVPPSPPASLPMSPLAKP 784
Query: 93 PPLSSP 98
PP + P
Sbjct: 785 PPQAPP 790
Score = 26.2 bits (56), Expect = 6.1
Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 4/53 (7%)
Query: 47 PPETSEPRVALGRLPPAAEVQCPCHCHPAGAP-APPRAVPHSSFSLSPPLSSP 98
PP + P +A PP + P P AP +P ++P S + PP + P
Sbjct: 784 PPPQAPPALAT---PPLQALPSPPASFPGQAPFSPSASLPMSPLATPPPQAPP 833
Score = 25.8 bits (55), Expect = 7.9
Identities = 16/60 (26%), Positives = 21/60 (35%)
Query: 39 SSAVGRQDPPETSEPRVALGRLPPAAEVQCPCHCHPAGAPAPPRAVPHSSFSLSPPLSSP 98
S R PP + LPP+ + P P APP S +PP +P
Sbjct: 310 SGTKARPVPPPDNAATPLPATLPPSPPLATPLPLAPPSPSAPPSLQTLPSPPATPPSQAP 369
>gi|169172132 PREDICTED: similar to forkhead box L2 [Homo sapiens]
Length = 528
Score = 34.3 bits (77), Expect = 0.022
Identities = 25/63 (39%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Query: 38 GSSAVGRQDPPETSEPRVALGRLPPAAEVQCPCHCHPAGAPAPP-RAVPHS-SFSLSPPL 95
G A G Q P SEP A GRL P + + P +PAPP + P FS+ L
Sbjct: 436 GPRAGGAQGPSGPSEPPAAQGRLAPDSAGEGAPGREPPASPAPPGKEHPRDLKFSIDYIL 495
Query: 96 SSP 98
SSP
Sbjct: 496 SSP 498
>gi|239743053 PREDICTED: hypothetical protein XP_002342748 [Homo
sapiens]
Length = 591
Score = 34.3 bits (77), Expect = 0.022
Identities = 25/63 (39%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Query: 38 GSSAVGRQDPPETSEPRVALGRLPPAAEVQCPCHCHPAGAPAPP-RAVPHS-SFSLSPPL 95
G A G Q P SEP A GRL P + + P +PAPP + P FS+ L
Sbjct: 499 GPRAGGAQGPSGPSEPPAAQGRLAPDSAGEGAPGREPPASPAPPGKEHPRDLKFSIDYIL 558
Query: 96 SSP 98
SSP
Sbjct: 559 SSP 561
>gi|113419423 PREDICTED: similar to forkhead box L2 [Homo sapiens]
Length = 387
Score = 34.3 bits (77), Expect = 0.022
Identities = 25/63 (39%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Query: 38 GSSAVGRQDPPETSEPRVALGRLPPAAEVQCPCHCHPAGAPAPP-RAVPHS-SFSLSPPL 95
G A G Q P SEP A GRL P + + P +PAPP + P FS+ L
Sbjct: 203 GPRAGGAQGPSGPSEPPAAQGRLAPDSAGEGAPGREPPASPAPPGKEHPRDLKFSIDYIL 262
Query: 96 SSP 98
SSP
Sbjct: 263 SSP 265
>gi|21265052 ADAM metallopeptidase with thrombospondin type 1 motif,
14 isoform 2 preproprotein [Homo sapiens]
Length = 1223
Score = 33.9 bits (76), Expect = 0.029
Identities = 28/97 (28%), Positives = 40/97 (41%), Gaps = 22/97 (22%)
Query: 16 LWSAACSRAASGDD--------NAFPFDIEGSSAVGRQDPPETSEP-----------RVA 56
L +C + ASG + + PF GS G QDP + +EP
Sbjct: 1088 LCCVSCIKKASGPNPGPDPGPTSLPPFSTPGSPLPGPQDPADAAEPPGKPTGSEDHQHGR 1147
Query: 57 LGRLPPAAEVQCPCHCHPAGAPAPPRAVPHSSFSLSP 93
+LP A + P HP AP +P +S+S+SP
Sbjct: 1148 ATQLPGALDTSSPGTQHPF---APETPIPGASWSISP 1181
>gi|110611167 ADAM metallopeptidase with thrombospondin type 1 motif,
14 isoform 1 preproprotein [Homo sapiens]
Length = 1226
Score = 33.9 bits (76), Expect = 0.029
Identities = 28/97 (28%), Positives = 40/97 (41%), Gaps = 22/97 (22%)
Query: 16 LWSAACSRAASGDD--------NAFPFDIEGSSAVGRQDPPETSEP-----------RVA 56
L +C + ASG + + PF GS G QDP + +EP
Sbjct: 1091 LCCVSCIKKASGPNPGPDPGPTSLPPFSTPGSPLPGPQDPADAAEPPGKPTGSEDHQHGR 1150
Query: 57 LGRLPPAAEVQCPCHCHPAGAPAPPRAVPHSSFSLSP 93
+LP A + P HP AP +P +S+S+SP
Sbjct: 1151 ATQLPGALDTSSPGTQHPF---APETPIPGASWSISP 1184
>gi|4758460 glycoprotein V (platelet) [Homo sapiens]
Length = 560
Score = 33.5 bits (75), Expect = 0.038
Identities = 24/73 (32%), Positives = 33/73 (45%), Gaps = 9/73 (12%)
Query: 42 VGRQDPPETSEPRVALGRLP----PAAEVQCPCHCHPAGAPAPPRAVPHSSFSLSPPLSS 97
VG ++PP + P G LP P + +CP P G P P A S + P L+
Sbjct: 443 VGGEEPPRCAGPGAHAG-LPLWALPGGDAECP---GPRGPPPRPAADSSSEAPVHPALA- 497
Query: 98 PQCLESFTWARSV 110
P E + WA+ V
Sbjct: 498 PNSSEPWVWAQPV 510
>gi|4885363 goosecoid homeobox 2 [Homo sapiens]
Length = 205
Score = 32.7 bits (73), Expect = 0.065
Identities = 21/54 (38%), Positives = 23/54 (42%), Gaps = 6/54 (11%)
Query: 43 GRQDPPETSEPRVALGRLPPAAEVQCPCHCHPAGAP-APPRAVPHSSFSLSPPL 95
GRQ P + EP P AA C C C P AP PP A L+ PL
Sbjct: 46 GRQSPAKPEEPGA-----PEAAPCACCCCCGPRAAPCGPPEAAAGLGARLAWPL 94
>gi|11415052 retinoid X receptor, beta [Homo sapiens]
Length = 533
Score = 32.3 bits (72), Expect = 0.085
Identities = 28/99 (28%), Positives = 40/99 (40%), Gaps = 17/99 (17%)
Query: 3 LSSAWRSVLPLWLLWSAACSRAASGDDNAFPFDIEGSSA------VGRQD-PPETSEPRV 55
++S WR P WL +AA + A +G + P G + GR P++S P
Sbjct: 32 VASRWRRRRP-WLDPAAAAAAAVAGGEQQTPEPEPGEAGRDGMGDSGRDSRSPDSSSPNP 90
Query: 56 ALGRLPPAAEVQCPCHCHPAGAPAPPRAVPHSSFSLSPP 94
+PP + P G P PP P S +PP
Sbjct: 91 LPQGVPPPS---------PPGPPLPPSTAPSLGGSGAPP 120
>gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 855
Score = 32.3 bits (72), Expect = 0.085
Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
Query: 36 IEGSSAVGRQDPPETSEPRVALGRLPPAAEVQCPCHCHPAGAPAPPRAVPHSSFSLSPPL 95
+ S+ Q PP + P + + PPA+ P P AP PP A P + PP
Sbjct: 460 VSPSATPPSQAPPSLAAPPLQVPPSPPASPPMSPSATPPPQAP-PPLAAPPLQLAKPPPQ 518
Query: 96 SSP 98
+ P
Sbjct: 519 APP 521
Score = 26.2 bits (56), Expect = 6.1
Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 4/53 (7%)
Query: 47 PPETSEPRVALGRLPPAAEVQCPCHCHPAGAP-APPRAVPHSSFSLSPPLSSP 98
PP + P +A PP + P P AP +P ++P S + PP + P
Sbjct: 515 PPPQAPPALAT---PPLQALPSPPASFPGQAPFSPSASLPMSPLATPPPQAPP 564
>gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo
sapiens]
Length = 816
Score = 32.3 bits (72), Expect = 0.085
Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
Query: 36 IEGSSAVGRQDPPETSEPRVALGRLPPAAEVQCPCHCHPAGAPAPPRAVPHSSFSLSPPL 95
+ S+ Q PP + P + + PPA+ P P AP PP A P + PP
Sbjct: 421 VSPSATPPSQAPPSLAAPPLQVPPSPPASPPMSPSATPPPQAP-PPLAAPPLQLAKPPPQ 479
Query: 96 SSP 98
+ P
Sbjct: 480 APP 482
Score = 26.2 bits (56), Expect = 6.1
Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 4/53 (7%)
Query: 47 PPETSEPRVALGRLPPAAEVQCPCHCHPAGAP-APPRAVPHSSFSLSPPLSSP 98
PP + P +A PP + P P AP +P ++P S + PP + P
Sbjct: 476 PPPQAPPALAT---PPLQALPSPPASFPGQAPFSPSASLPMSPLATPPPQAPP 525
>gi|148276998 zinc finger protein 628 [Homo sapiens]
Length = 1055
Score = 32.3 bits (72), Expect = 0.085
Identities = 22/59 (37%), Positives = 27/59 (45%), Gaps = 4/59 (6%)
Query: 56 ALGRLPP---AAEVQCPCHCHPAGAPAPPRAVPHSSFSLSPPLSSPQCLESFTWARSVR 111
A GR PP AAEV CP AP PP P + S P +C +SF + +R
Sbjct: 409 AAGRPPPQAEAAEVTCPQEPLAPAAPVPP-PPPSAPASAERPYKCAECGKSFKGSSGLR 466
>gi|171543895 ataxin 2 [Homo sapiens]
Length = 1313
Score = 32.0 bits (71), Expect = 0.11
Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 47 PPETSEPRVALGRLPPAAEVQCPCHCHPAGAPAPPRAVPHSSFSLSPPLSSPQ 99
PP + P R PP+ + P H G+PAP +P S PP SP+
Sbjct: 575 PPRAATPTRPPSR-PPSRPSRPPSHPSAHGSPAPVSTMPKRMSSEGPPRMSPK 626
Score = 25.8 bits (55), Expect = 7.9
Identities = 20/74 (27%), Positives = 27/74 (36%), Gaps = 12/74 (16%)
Query: 36 IEGSSAVGRQDPPETSEPRVALGRLPPAAEVQCPCHC------------HPAGAPAPPRA 83
+ ++A R T R A R P +Q P +P+ AP PP
Sbjct: 1 MRSAAAAPRSPAVATESRRFAAARWPGWRSLQRPARRSGRGGGGAAPGPYPSAAPPPPGP 60
Query: 84 VPHSSFSLSPPLSS 97
P S SPP +S
Sbjct: 61 GPPPSRQSSPPSAS 74
>gi|24308073 protein tyrosine phosphatase, non-receptor type 23
[Homo sapiens]
Length = 1636
Score = 32.0 bits (71), Expect = 0.11
Identities = 19/55 (34%), Positives = 23/55 (41%), Gaps = 3/55 (5%)
Query: 47 PPETSEPRVALGRLPPAAEV---QCPCHCHPAGAPAPPRAVPHSSFSLSPPLSSP 98
PP+ S P +A+ P V Q P H A P P A P F + PP P
Sbjct: 865 PPQFSGPELAMAVRPATTTVDSIQAPIPSHTAPRPNPTPAPPPPCFPVPPPQPLP 919
>gi|111955326 MLX interacting protein [Homo sapiens]
Length = 919
Score = 32.0 bits (71), Expect = 0.11
Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 5/40 (12%)
Query: 46 DPPETSEPRVALGRLPPAAEVQCPCHCHPAGAPAPPRAVP 85
D +T EP PPA+ P H + AP PPRA P
Sbjct: 31 DDSDTDEPSP-----PPASGAATPARAHASAAPPPPRAGP 65
>gi|154146199 sal-like 3 [Homo sapiens]
Length = 1300
Score = 31.6 bits (70), Expect = 0.14
Identities = 28/87 (32%), Positives = 35/87 (40%), Gaps = 2/87 (2%)
Query: 16 LWSAACSRAASGDDNAFPFDIEGSSAVGRQDPPETSEPRVALGRLPPAAEVQCPCHCHPA 75
L + A + A +G A P EG+ + R + S P PAA P PA
Sbjct: 266 LSAGAPAAAIAGSGPAAPAAFEGAQPLSRPESG-ASTPGGPAEPSAPAAPSAAPAPAAPA 324
Query: 76 GAPAPPRAVPHSSFSLS-PPLSSPQCL 101
APAP A S S PP +P L
Sbjct: 325 PAPAPQSAASSQPQSASTPPALAPGSL 351
>gi|226437579 NAC alpha domain containing [Homo sapiens]
Length = 1562
Score = 31.2 bits (69), Expect = 0.19
Identities = 24/59 (40%), Positives = 27/59 (45%), Gaps = 5/59 (8%)
Query: 45 QDPPETS----EPRVALGRLPPAAEVQCPCHCHPAGAPAPPRAVPHSSFSLSPPLSSPQ 99
QDP E S EP +LG PP A VQ P +G P P S S PL SP+
Sbjct: 1252 QDPQEDSVEDEEPPGSLGLPPPQAGVQ-PAAAAVSGTTQPLGTGPRVSLSPHSPLLSPK 1309
Score = 29.3 bits (64), Expect = 0.72
Identities = 18/61 (29%), Positives = 22/61 (36%)
Query: 39 SSAVGRQDPPETSEPRVALGRLPPAAEVQCPCHCHPAGAPAPPRAVPHSSFSLSPPLSSP 98
S+ V R P+ S P G P E PC C + P S L PP +
Sbjct: 1218 STPVDRPLGPDPSAPGTLAGAALPPLEPPAPCLCQDPQEDSVEDEEPPGSLGLPPPQAGV 1277
Query: 99 Q 99
Q
Sbjct: 1278 Q 1278
>gi|239754540 PREDICTED: NAC alpha domain containing [Homo sapiens]
Length = 1522
Score = 31.2 bits (69), Expect = 0.19
Identities = 24/59 (40%), Positives = 27/59 (45%), Gaps = 5/59 (8%)
Query: 45 QDPPETS----EPRVALGRLPPAAEVQCPCHCHPAGAPAPPRAVPHSSFSLSPPLSSPQ 99
QDP E S EP +LG PP A VQ P +G P P S S PL SP+
Sbjct: 1212 QDPQEDSVEDEEPPGSLGLPPPQAGVQ-PAAAAVSGTTQPLGTGPRVSLSPHSPLLSPK 1269
Score = 29.3 bits (64), Expect = 0.72
Identities = 18/61 (29%), Positives = 22/61 (36%)
Query: 39 SSAVGRQDPPETSEPRVALGRLPPAAEVQCPCHCHPAGAPAPPRAVPHSSFSLSPPLSSP 98
S+ V R P+ S P G P E PC C + P S L PP +
Sbjct: 1178 STPVDRPLGPDPSAPGTLAGAALPPLEPPAPCLCQDPQEDSVEDEEPPGSLGLPPPQAGV 1237
Query: 99 Q 99
Q
Sbjct: 1238 Q 1238
>gi|239749105 PREDICTED: NAC alpha domain containing [Homo sapiens]
Length = 1522
Score = 31.2 bits (69), Expect = 0.19
Identities = 24/59 (40%), Positives = 27/59 (45%), Gaps = 5/59 (8%)
Query: 45 QDPPETS----EPRVALGRLPPAAEVQCPCHCHPAGAPAPPRAVPHSSFSLSPPLSSPQ 99
QDP E S EP +LG PP A VQ P +G P P S S PL SP+
Sbjct: 1212 QDPQEDSVEDEEPPGSLGLPPPQAGVQ-PAAAAVSGTTQPLGTGPRVSLSPHSPLLSPK 1269
Score = 29.3 bits (64), Expect = 0.72
Identities = 18/61 (29%), Positives = 22/61 (36%)
Query: 39 SSAVGRQDPPETSEPRVALGRLPPAAEVQCPCHCHPAGAPAPPRAVPHSSFSLSPPLSSP 98
S+ V R P+ S P G P E PC C + P S L PP +
Sbjct: 1178 STPVDRPLGPDPSAPGTLAGAALPPLEPPAPCLCQDPQEDSVEDEEPPGSLGLPPPQAGV 1237
Query: 99 Q 99
Q
Sbjct: 1238 Q 1238
>gi|239743134 PREDICTED: NAC alpha domain containing [Homo sapiens]
Length = 1562
Score = 31.2 bits (69), Expect = 0.19
Identities = 24/59 (40%), Positives = 27/59 (45%), Gaps = 5/59 (8%)
Query: 45 QDPPETS----EPRVALGRLPPAAEVQCPCHCHPAGAPAPPRAVPHSSFSLSPPLSSPQ 99
QDP E S EP +LG PP A VQ P +G P P S S PL SP+
Sbjct: 1252 QDPQEDSVEDEEPPGSLGLPPPQAGVQ-PAAAAVSGTTQPLGTGPRVSLSPHSPLLSPK 1309
Score = 29.3 bits (64), Expect = 0.72
Identities = 18/61 (29%), Positives = 22/61 (36%)
Query: 39 SSAVGRQDPPETSEPRVALGRLPPAAEVQCPCHCHPAGAPAPPRAVPHSSFSLSPPLSSP 98
S+ V R P+ S P G P E PC C + P S L PP +
Sbjct: 1218 STPVDRPLGPDPSAPGTLAGAALPPLEPPAPCLCQDPQEDSVEDEEPPGSLGLPPPQAGV 1277
Query: 99 Q 99
Q
Sbjct: 1278 Q 1278
>gi|239508792 PREDICTED: NAC alpha domain containing [Homo sapiens]
Length = 1522
Score = 31.2 bits (69), Expect = 0.19
Identities = 24/59 (40%), Positives = 27/59 (45%), Gaps = 5/59 (8%)
Query: 45 QDPPETS----EPRVALGRLPPAAEVQCPCHCHPAGAPAPPRAVPHSSFSLSPPLSSPQ 99
QDP E S EP +LG PP A VQ P +G P P S S PL SP+
Sbjct: 1212 QDPQEDSVEDEEPPGSLGLPPPQAGVQ-PAAAAVSGTTQPLGTGPRVSLSPHSPLLSPK 1269
Score = 29.3 bits (64), Expect = 0.72
Identities = 18/61 (29%), Positives = 22/61 (36%)
Query: 39 SSAVGRQDPPETSEPRVALGRLPPAAEVQCPCHCHPAGAPAPPRAVPHSSFSLSPPLSSP 98
S+ V R P+ S P G P E PC C + P S L PP +
Sbjct: 1178 STPVDRPLGPDPSAPGTLAGAALPPLEPPAPCLCQDPQEDSVEDEEPPGSLGLPPPQAGV 1237
Query: 99 Q 99
Q
Sbjct: 1238 Q 1238
>gi|30410035 late cornified envelope 5A [Homo sapiens]
Length = 118
Score = 31.2 bits (69), Expect = 0.19
Identities = 15/38 (39%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Query: 61 PPAAEVQCPCHCHPAGAP-APPRAVPHSSFSLSPPLSS 97
PP +CP C P P PP+ P S PP+SS
Sbjct: 13 PPKCTPKCPPKCTPKCPPKCPPKCPPQCSAPCPPPVSS 50
>gi|15812178 zinc finger protein 36, C3H type-like 2 [Homo sapiens]
Length = 494
Score = 31.2 bits (69), Expect = 0.19
Identities = 33/91 (36%), Positives = 38/91 (41%), Gaps = 16/91 (17%)
Query: 19 AACSRAASGDDNAFPFDIEGSS-------------AVGRQDPPETSEPRVALGRLPPAAE 65
AACS +AS +NAF F E SS AV + + + G PPA
Sbjct: 351 AACS-SASCANNAFAFGPELSSLITPLAIQTHNFAAVAAAAYYRSQQQQQQQGLAPPAQP 409
Query: 66 VQCPCHCHPAGAPAPPRAVPHSSFSLSPPLS 96
P PAGA APP P SF L LS
Sbjct: 410 PAPPSATLPAGAAAPPS--PPFSFQLPRRLS 438
>gi|197245373 proline rich 22 isoform 1 [Homo sapiens]
Length = 422
Score = 30.8 bits (68), Expect = 0.25
Identities = 18/63 (28%), Positives = 25/63 (39%), Gaps = 15/63 (23%)
Query: 25 ASGDDNAFPFDIEGSSAVGRQDPPETSEPRVALGRL---------------PPAAEVQCP 69
A+ + P +EG+ +G Q P +EP A+G L PPA P
Sbjct: 11 AAPQEGFSPQSLEGAEVLGNQPAPTCAEPPPAMGSLNLYHPPDPEKEVFPAPPAGFQMAP 70
Query: 70 CHC 72
C C
Sbjct: 71 CGC 73
>gi|156071470 hyperpolarization activated cyclic nucleotide-gated
potassium channel 2 [Homo sapiens]
Length = 889
Score = 30.8 bits (68), Expect = 0.25
Identities = 28/85 (32%), Positives = 36/85 (42%), Gaps = 19/85 (22%)
Query: 38 GSSAVGRQDPPETSEPRVALGRLPPAAEVQCPCHCHPAGAPAPPRAVPHSSFSLSP--PL 95
GS + R+ PP + + G PPA+ P GAPA PRA S + P PL
Sbjct: 753 GSPRLVRRPPPGPAPAAASPGPPPPAS---------PPGAPASPRAPRTSPYGGLPAAPL 803
Query: 96 SSPQCLESFTWARSVRKLEIKSFPL 120
+ P A R+L S PL
Sbjct: 804 AGP--------ALPARRLSRASRPL 820
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.131 0.435
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,058,201
Number of Sequences: 37866
Number of extensions: 316710
Number of successful extensions: 2427
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 163
Number of HSP's that attempted gapping in prelim test: 2192
Number of HSP's gapped (non-prelim): 375
length of query: 120
length of database: 18,247,518
effective HSP length: 89
effective length of query: 31
effective length of database: 14,877,444
effective search space: 461200764
effective search space used: 461200764
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.