Guide to the Human Genome
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Name: LAMA4 Sequence: fasta or formatted (120aa) NCBI GI: 157419130
Description:

laminin, alpha 4 isoform 3 precursor

Referenced in:

Netrins and Laminins

Other entries for this name:
alt prot [1816aa] laminin, alpha 4 isoform 2 precursor
alt prot [1823aa] laminin, alpha 4 isoform 1 precursor
alt prot [1816aa] laminin, alpha 4 isoform 2 precursor
alt mRNA [120aa] laminin, alpha 4 isoform 3 precursor
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            13.3         16           2
 C cysteine            4.2          5           1
 D aspartate           3.3          4           2
 E glutamate           5.0          6           1
 F phenylalanine       4.2          5           1
 G glycine             4.2          5           1
 H histidine           2.5          3           1
 I isoleucine          1.7          2           1
 K lysine              1.7          2           1
 L leucine            10.0         12           2
 M methionine          0.8          1           1
 N asparagine          0.8          1           1
 P proline            14.2         17           2
 Q glutamine           2.5          3           1
 R arginine            6.7          8           1
 S serine             15.0         18           2
 T threonine           1.7          2           1
 V valine              5.0          6           1
 W tryptophan          3.3          4           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   laminin, alpha 4 isoform 3 precursor 
LAMA4                 1.000   laminin, alpha 4 isoform 3 precursor 
LAMA4                 0.480   laminin, alpha 4 isoform 2 precursor 
LAMA4                 0.480   laminin, alpha 4 isoform 1 precursor 
LAMA4                 0.480   laminin, alpha 4 isoform 2 precursor 
FLJ22184              0.039   PREDICTED: hypothetical protein FLJ22184 
LOC651986             0.039   PREDICTED: similar to forkhead box L2 
LOC100288524          0.039   PREDICTED: hypothetical protein XP_002342748 
LOC651986             0.039   PREDICTED: similar to forkhead box L2 
ADAMTS14              0.039   ADAM metallopeptidase with thrombospondin type 1 mot...
ADAMTS14              0.039   ADAM metallopeptidase with thrombospondin type 1 mo...
GP5                   0.035   glycoprotein V (platelet) 
GSC2                  0.035   goosecoid homeobox 2 
RXRB                  0.031   retinoid X receptor, beta 
FLJ22184              0.031   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.031   PREDICTED: hypothetical protein LOC80164 
ZNF628                0.031   zinc finger protein 628 
ATXN2                 0.031   ataxin 2 
PTPN23                0.031   protein tyrosine phosphatase, non-receptor type 23 [...
MLXIP                 0.031   MLX interacting protein 
SALL3                 0.031   sal-like 3 
NACAD                 0.026   NAC alpha domain containing 
NACAD                 0.026   PREDICTED: NAC alpha domain containing 
NACAD                 0.026   PREDICTED: NAC alpha domain containing 
NACAD                 0.026   PREDICTED: NAC alpha domain containing 
NACAD                 0.026   PREDICTED: NAC alpha domain containing 
LCE5A                 0.026   late cornified envelope 5A 
ZFP36L2               0.026   zinc finger protein 36, C3H type-like 2 
PRR22                 0.026   proline rich 22 isoform 1 
HCN2                  0.026   hyperpolarization activated cyclic nucleotide-gated...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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