Guide to the Human Genome
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Name: TGM4 Sequence: fasta or formatted (684aa) NCBI GI: 156627577
Description:

transglutaminase 4 (prostate)

Referenced in:

Transglutaminases
Prostate

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.5         31           2
 C cysteine            2.2         15           2
 D aspartate           5.1         35           2
 E glutamate           6.1         42           2
 F phenylalanine       4.2         29           1
 G glycine             6.0         41           2
 H histidine           2.5         17           2
 I isoleucine          6.3         43           2
 K lysine              6.4         44           2
 L leucine             9.1         62           3
 M methionine          2.2         15           2
 N asparagine          5.0         34           1
 P proline             4.2         29           1
 Q glutamine           5.3         36           2
 R arginine            3.9         27           3
 S serine              7.6         52           2
 T threonine           7.2         49           2
 V valine              7.6         52           2
 W tryptophan          1.8         12           1
 Y tyrosine            2.8         19           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   transglutaminase 4 (prostate) 
TGM1                  0.330   transglutaminase 1 
TGM7                  0.289   transglutaminase 7 
TGM6                  0.289   transglutaminase 6 
F13A1                 0.273   coagulation factor XIII A1 subunit precursor 
TGM3                  0.267   transglutaminase 3 precursor 
TGM5                  0.264   transglutaminase 5 isoform 1 
TGM2                  0.245   transglutaminase 2 isoform a 
TGM2                  0.233   transglutaminase 2 isoform b 
TGM5                  0.226   transglutaminase 5 isoform 2 
EPB42                 0.177   erythrocyte membrane protein band 4.2 isoform 1 [Ho...
EPB42                 0.176   erythrocyte membrane protein band 4.2 isoform 2 [Ho...
PCDHA5                0.004   protocadherin alpha 5 isoform 1 precursor 
PCDHA5                0.004   protocadherin alpha 5 isoform 2 precursor 
ATP2A3                0.004   ATPase, Ca++ transporting, ubiquitous isoform a [Hom...
ATP2A3                0.004   ATPase, Ca++ transporting, ubiquitous isoform c [Hom...
ATP2A3                0.004   ATPase, Ca++ transporting, ubiquitous isoform f [Hom...
ATP2A3                0.004   ATPase, Ca++ transporting, ubiquitous isoform c [Hom...
ATP2A3                0.004   ATPase, Ca++ transporting, ubiquitous isoform b [Hom...
ATP2A3                0.004   ATPase, Ca++ transporting, ubiquitous isoform d [Hom...
ATP2A3                0.004   ATPase, Ca++ transporting, ubiquitous isoform e [Hom...
MAPK15                0.004   mitogen-activated protein kinase 15 
XCR1                  0.004   XC chemokine receptor 1 
XCR1                  0.004   XC chemokine receptor 1 
EPHA1                 0.004   ephrin receptor EphA1 
C1orf226              0.004   hypothetical protein LOC400793 isoform 2 
C1orf226              0.004   hypothetical protein LOC400793 isoform 1 
BYSL                  0.004   bystin 
CYTL1                 0.004   cytokine-like 1 
PKD1L1                0.004   polycystin-1L1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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