Guide to the Human Genome
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Name: TGM6 Sequence: fasta or formatted (706aa) NCBI GI: 148664232
Description:

transglutaminase 6

Referenced in:

Transglutaminases

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.8         48           2
 C cysteine            2.0         14           1
 D aspartate           5.1         36           2
 E glutamate           7.4         52           3
 F phenylalanine       3.1         22           1
 G glycine             6.9         49           3
 H histidine           2.7         19           2
 I isoleucine          5.2         37           2
 K lysine              4.8         34           2
 L leucine             9.3         66           2
 M methionine          1.3          9           1
 N asparagine          3.3         23           2
 P proline             4.4         31           2
 Q glutamine           3.8         27           1
 R arginine            7.4         52           2
 S serine              7.4         52           2
 T threonine           5.4         38           1
 V valine              8.9         63           2
 W tryptophan          2.3         16           1
 Y tyrosine            2.5         18           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   transglutaminase 6 
TGM3                  0.455   transglutaminase 3 precursor 
TGM5                  0.426   transglutaminase 5 isoform 1 
TGM7                  0.400   transglutaminase 7 
TGM5                  0.354   transglutaminase 5 isoform 2 
TGM2                  0.337   transglutaminase 2 isoform a 
TGM1                  0.298   transglutaminase 1 
TGM2                  0.295   transglutaminase 2 isoform b 
TGM4                  0.280   transglutaminase 4 (prostate) 
F13A1                 0.265   coagulation factor XIII A1 subunit precursor 
EPB42                 0.213   erythrocyte membrane protein band 4.2 isoform 1 [Ho...
EPB42                 0.212   erythrocyte membrane protein band 4.2 isoform 2 [Ho...
PVRL1                 0.007   poliovirus receptor-related 1 isoform 3 
PVRL1                 0.007   poliovirus receptor-related 1 isoform 2 
PVRL1                 0.007   poliovirus receptor-related 1 isoform 1 
KIAA1529              0.005   hypothetical protein LOC57653 
ITSN2                 0.004   intersectin 2 isoform 3 
ITSN2                 0.004   intersectin 2 isoform 1 
ITSN2                 0.004   intersectin 2 isoform 2 
CDH2                  0.004   cadherin 2, type 1 preproprotein 
PTPRM                 0.004   protein tyrosine phosphatase, receptor type, M isof...
PTPRM                 0.004   protein tyrosine phosphatase, receptor type, M isof...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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