Guide to the Human Genome
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Name: F13A1 Sequence: fasta or formatted (732aa) NCBI GI: 119395709
Description:

coagulation factor XIII A1 subunit precursor

Referenced in:

Coagulation
Transglutaminases

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.1         37           2
 C cysteine            1.2          9           1
 D aspartate           6.4         47           2
 E glutamate           6.7         49           3
 F phenylalanine       4.4         32           2
 G glycine             6.8         50           2
 H histidine           1.9         14           2
 I isoleucine          5.2         38           3
 K lysine              5.2         38           2
 L leucine             6.6         48           2
 M methionine          2.7         20           2
 N asparagine          5.5         40           2
 P proline             4.5         33           2
 Q glutamine           3.6         26           1
 R arginine            6.1         45           2
 S serine              6.3         46           2
 T threonine           6.1         45           1
 V valine              9.7         71           2
 W tryptophan          2.0         15           1
 Y tyrosine            4.0         29           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   coagulation factor XIII A1 subunit precursor 
TGM1                  0.374   transglutaminase 1 
TGM2                  0.266   transglutaminase 2 isoform a 
TGM3                  0.262   transglutaminase 3 precursor 
TGM5                  0.257   transglutaminase 5 isoform 1 
TGM6                  0.253   transglutaminase 6 
TGM4                  0.252   transglutaminase 4 (prostate) 
TGM2                  0.249   transglutaminase 2 isoform b 
TGM7                  0.229   transglutaminase 7 
TGM5                  0.227   transglutaminase 5 isoform 2 
EPB42                 0.143   erythrocyte membrane protein band 4.2 isoform 2 [Ho...
EPB42                 0.143   erythrocyte membrane protein band 4.2 isoform 1 [Ho...
PEX19                 0.003   peroxisomal biogenesis factor 19 isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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