Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: EPB42 Sequence: fasta or formatted (691aa) NCBI GI: 166362737
Description:

erythrocyte membrane protein band 4.2 isoform 2

Referenced in:

Transglutaminases
Hematopoiesis and Erythrocytes

Other entries for this name:
alt prot [721aa] erythrocyte membrane protein band 4.2 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.1         56           2
 C cysteine            2.2         15           2
 D aspartate           3.6         25           1
 E glutamate           6.5         45           2
 F phenylalanine       3.5         24           2
 G glycine             6.8         47           3
 H histidine           1.9         13           2
 I isoleucine          4.5         31           2
 K lysine              4.6         32           2
 L leucine            11.6         80           3
 M methionine          1.3          9           1
 N asparagine          4.3         30           2
 P proline             4.9         34           2
 Q glutamine           5.9         41           1
 R arginine            6.2         43           2
 S serine              6.5         45           2
 T threonine           6.2         43           2
 V valine              6.9         48           2
 W tryptophan          2.0         14           2
 Y tyrosine            2.3         16           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   erythrocyte membrane protein band 4.2 isoform 2 [Ho... 
EPB42                 0.996   erythrocyte membrane protein band 4.2 isoform 1 [Ho...
TGM5                  0.262   transglutaminase 5 isoform 1 
TGM7                  0.255   transglutaminase 7 
TGM2                  0.255   transglutaminase 2 isoform a 
TGM3                  0.224   transglutaminase 3 precursor 
TGM2                  0.220   transglutaminase 2 isoform b 
TGM6                  0.218   transglutaminase 6 
TGM5                  0.199   transglutaminase 5 isoform 2 
TGM4                  0.176   transglutaminase 4 (prostate) 
TGM1                  0.174   transglutaminase 1 
F13A1                 0.154   coagulation factor XIII A1 subunit precursor 
ZFHX4                 0.006   zinc finger homeodomain 4 
SYT14                 0.005   synaptotagmin XIV isoform 2 
SYT14                 0.005   synaptotagmin XIV isoform 4 
AKAP14                0.005   A kinase (PRKA) anchor protein 14 isoform a 
COG4                  0.005   component of oligomeric golgi complex 4 
BAZ1B                 0.004   bromodomain adjacent to zinc finger domain, 1B [Homo...
CCAR1                 0.004   cell-cycle and apoptosis regulatory protein 1 
ENAH                  0.004   enabled homolog isoform a 
ENAH                  0.004   enabled homolog isoform b 
AKAP14                0.004   A kinase (PRKA) anchor protein 14 isoform b 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press