Guide to the Human Genome
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Name: TGM5 Sequence: fasta or formatted (720aa) NCBI GI: 94981556
Description:

transglutaminase 5 isoform 1

Referenced in:

Transglutaminases

Other entries for this name:
alt prot [638aa] transglutaminase 5 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.7         41           2
 C cysteine            2.4         17           2
 D aspartate           5.8         42           2
 E glutamate           4.6         33           2
 F phenylalanine       4.2         30           1
 G glycine             6.1         44           2
 H histidine           1.9         14           2
 I isoleucine          5.6         40           2
 K lysine              5.1         37           3
 L leucine             9.6         69           2
 M methionine          1.7         12           1
 N asparagine          5.4         39           2
 P proline             5.4         39           2
 Q glutamine           6.0         43           2
 R arginine            4.2         30           2
 S serine              8.6         62           2
 T threonine           5.1         37           1
 V valine              7.1         51           2
 W tryptophan          2.1         15           1
 Y tyrosine            3.5         25           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   transglutaminase 5 isoform 1 
TGM5                  0.797   transglutaminase 5 isoform 2 
TGM7                  0.440   transglutaminase 7 
TGM6                  0.412   transglutaminase 6 
TGM3                  0.400   transglutaminase 3 precursor 
TGM2                  0.356   transglutaminase 2 isoform a 
TGM2                  0.314   transglutaminase 2 isoform b 
TGM1                  0.290   transglutaminase 1 
F13A1                 0.261   coagulation factor XIII A1 subunit precursor 
TGM4                  0.249   transglutaminase 4 (prostate) 
EPB42                 0.247   erythrocyte membrane protein band 4.2 isoform 2 [Ho...
EPB42                 0.244   erythrocyte membrane protein band 4.2 isoform 1 [Ho...
KIAA1210              0.006   hypothetical protein LOC57481 
UBE2D1                0.005   ubiquitin-conjugating enzyme E2D 1 
PPP2R5B               0.004   beta isoform of regulatory subunit B56, protein phosp...
HSPA4L                0.004   heat shock 70kDa protein 4-like 
SAPS1                 0.004   SAPS domain family, member 1 
CHEK2                 0.003   protein kinase CHK2 isoform c 
CHEK2                 0.003   protein kinase CHK2 isoform b 
CHEK2                 0.003   protein kinase CHK2 isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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