Guide to the Human Genome
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Name: TGM3 Sequence: fasta or formatted (693aa) NCBI GI: 189458821
Description:

transglutaminase 3 precursor

Referenced in:

Transglutaminases

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.1         42           2
 C cysteine            0.9          6           1
 D aspartate           5.6         39           2
 E glutamate           5.3         37           3
 F phenylalanine       4.0         28           1
 G glycine             8.1         56           2
 H histidine           1.2          8           2
 I isoleucine          5.8         40           2
 K lysine              4.8         33           2
 L leucine             8.5         59           3
 M methionine          2.7         19           1
 N asparagine          6.6         46           1
 P proline             4.5         31           1
 Q glutamine           3.6         25           1
 R arginine            4.9         34           2
 S serine              9.1         63           2
 T threonine           5.5         38           2
 V valine              8.1         56           3
 W tryptophan          2.3         16           1
 Y tyrosine            2.5         17           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   transglutaminase 3 precursor 
TGM6                  0.466   transglutaminase 6 
TGM5                  0.423   transglutaminase 5 isoform 1 
TGM7                  0.365   transglutaminase 7 
TGM5                  0.364   transglutaminase 5 isoform 2 
TGM2                  0.337   transglutaminase 2 isoform a 
TGM1                  0.306   transglutaminase 1 
TGM2                  0.286   transglutaminase 2 isoform b 
F13A1                 0.282   coagulation factor XIII A1 subunit precursor 
TGM4                  0.266   transglutaminase 4 (prostate) 
EPB42                 0.224   erythrocyte membrane protein band 4.2 isoform 1 [Ho...
EPB42                 0.223   erythrocyte membrane protein band 4.2 isoform 2 [Ho...
THUMPD1               0.005   THUMP domain containing 1 
IP6K3                 0.004   inositol hexakisphosphate kinase 3 
IP6K3                 0.004   inositol hexakisphosphate kinase 3 
ARSH                  0.004   arylsulfatase family, member H 
SP1                   0.004   Sp1 transcription factor isoform a 
SP1                   0.004   Sp1 transcription factor isoform b 
IL16                  0.004   interleukin 16 isoform 2 
IL16                  0.004   interleukin 16 isoform 1 precursor 
SEPT5                 0.004   septin 5 
HYDIN                 0.004   hydrocephalus inducing isoform a 
WNK3                  0.004   WNK lysine deficient protein kinase 3 isoform 1 [Hom...
WNK3                  0.004   WNK lysine deficient protein kinase 3 isoform 2 [Hom...
ZMPSTE24              0.004   zinc metallopeptidase STE24 
PCDHB11               0.004   protocadherin beta 11 precursor 
PMS1                  0.004   postmeiotic segregation 1 isoform c 
PMS1                  0.004   postmeiotic segregation 1 isoform b 
PMS1                  0.004   postmeiotic segregation 1 isoform a 
RASEF                 0.004   RAS and EF-hand domain containing 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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