Guide to the Human Genome
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Name: TGM2 Sequence: fasta or formatted (687aa) NCBI GI: 39777597
Description:

transglutaminase 2 isoform a

Referenced in:

Transglutaminases

Other entries for this name:
alt prot [548aa] transglutaminase 2 isoform b
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.8         40           2
 C cysteine            2.9         20           2
 D aspartate           5.5         38           2
 E glutamate           8.4         58           3
 F phenylalanine       3.6         25           1
 G glycine             7.3         50           1
 H histidine           1.9         13           2
 I isoleucine          4.7         32           2
 K lysine              4.7         32           1
 L leucine            10.2         70           3
 M methionine          1.6         11           1
 N asparagine          5.1         35           2
 P proline             4.7         32           1
 Q glutamine           3.6         25           2
 R arginine            5.7         39           2
 S serine              5.8         40           2
 T threonine           4.9         34           2
 V valine              8.3         57           2
 W tryptophan          1.9         13           1
 Y tyrosine            3.3         23           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   transglutaminase 2 isoform a 
TGM2                  0.792   transglutaminase 2 isoform b 
TGM5                  0.373   transglutaminase 5 isoform 1 
TGM7                  0.364   transglutaminase 7 
TGM6                  0.342   transglutaminase 6 
TGM3                  0.334   transglutaminase 3 precursor 
TGM5                  0.305   transglutaminase 5 isoform 2 
TGM1                  0.295   transglutaminase 1 
F13A1                 0.283   coagulation factor XIII A1 subunit precursor 
EPB42                 0.252   erythrocyte membrane protein band 4.2 isoform 2 [Ho...
EPB42                 0.251   erythrocyte membrane protein band 4.2 isoform 1 [Ho...
TGM4                  0.242   transglutaminase 4 (prostate) 
IVNS1ABP              0.004   influenza virus NS1A binding protein 
AARS2                 0.004   alanyl-tRNA synthetase 2, mitochondrial 
ANKRD20A5             0.004   PREDICTED: ankyrin repeat domain 20 family, member ...
ANKRD20A5             0.004   PREDICTED: ankyrin repeat domain 20 family, member ...
SCG2                  0.004   secretogranin II precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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