Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: GPBP1L1 Sequence: fasta or formatted (474aa) NCBI GI: 11056016
Description:

GC-rich promoter binding protein 1-like 1

Referenced in:

Cardiovascular System

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.7         27           3
 C cysteine            1.3          6           1
 D aspartate           5.1         24           3
 E glutamate           9.1         43           3
 F phenylalanine       4.4         21           2
 G glycine             7.6         36           3
 H histidine           4.0         19           2
 I isoleucine          1.5          7           1
 K lysine              7.4         35           2
 L leucine             6.3         30           2
 M methionine          1.5          7           1
 N asparagine          4.9         23           2
 P proline             8.0         38           3
 Q glutamine           2.7         13           1
 R arginine            5.5         26           3
 S serine             13.5         64           3
 T threonine           5.1         24           2
 V valine              4.0         19           2
 W tryptophan          1.9          9           1
 Y tyrosine            0.6          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   GC-rich promoter binding protein 1-like 1 
GPBP1                 0.283   GC-rich promoter binding protein 1 isoform 1 
GPBP1                 0.275   GC-rich promoter binding protein 1 isoform 3 
GPBP1                 0.270   GC-rich promoter binding protein 1 isoform 2 
AFF4                  0.021   ALL1 fused gene from 5q31 
NOLC1                 0.019   nucleolar and coiled-body phosphoprotein 1 
CNOT3                 0.018   CCR4-NOT transcription complex, subunit 3 
TSC22D2               0.017   TSC22 domain family, member 2 
CASKIN1               0.015   CASK interacting protein 1 
MLL4                  0.015   myeloid/lymphoid or mixed-lineage leukemia 4 
MLLT1                 0.014   myeloid/lymphoid or mixed-lineage leukemia (trithora...
ZNF828                0.014   zinc finger protein 828 
HRNR                  0.013   hornerin 
ATN1                  0.013   atrophin-1 
ATN1                  0.013   atrophin-1 
SRRM2                 0.013   splicing coactivator subunit SRm300 
ACIN1                 0.013   apoptotic chromatin condensation inducer 1 
DMKN                  0.011   dermokine isoform 4 precursor 
DMKN                  0.011   dermokine isoform 5 precursor 
DMKN                  0.011   dermokine isoform 3 precursor 
DMKN                  0.011   dermokine isoform 2 precursor 
MAP1B                 0.011   microtubule-associated protein 1B 
CDC2L5                0.011   cell division cycle 2-like 5 isoform 1 
CDC2L5                0.011   cell division cycle 2-like 5 isoform 2 
CENPC1                0.011   centromere protein C 1 
RFX7                  0.011   regulatory factor X domain containing 2 
KRT1                  0.010   keratin 1 
ABI2                  0.010   abl interactor 2 
INSM2                 0.010   insulinoma-associated protein IA-6 
IRX5                  0.010   iroquois homeobox protein 5 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press