Guide to the Human Genome
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Name: TMEM8B Sequence: fasta or formatted (472aa) NCBI GI: 110556642
Description:

transmembrane protein 8B isoform a

Not currently referenced in the text

Other entries for this name:
alt mRNA {472aa} transmembrane protein 8B isoform a
alt prot {338aa} transmembrane protein 8B isoform b
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.1         38           2
 C cysteine            4.2         20           1
 D aspartate           3.0         14           2
 E glutamate           3.4         16           2
 F phenylalanine       5.3         25           2
 G glycine             7.8         37           2
 H histidine           2.1         10           1
 I isoleucine          2.8         13           1
 K lysine              1.1          5           1
 L leucine            14.0         66           3
 M methionine          2.5         12           1
 N asparagine          2.3         11           1
 P proline             7.4         35           2
 Q glutamine           3.0         14           1
 R arginine            6.4         30           3
 S serine              7.2         34           2
 T threonine           5.9         28           2
 V valine              8.1         38           2
 W tryptophan          2.1         10           1
 Y tyrosine            3.4         16           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   transmembrane protein 8B isoform a 
TMEM8B                1.000   transmembrane protein 8B isoform a 
TMEM8B                0.567   transmembrane protein 8B isoform b 
TMEM8A                0.415   transmembrane protein 8 (five membrane-spanning dom...
TMEM8C                0.096   transmembrane protein 8C 
MEGF10                0.016   multiple EGF-like-domains 10 
KLF1                  0.009   Kruppel-like factor 1 (erythroid) 
THBS1                 0.008   thrombospondin 1 precursor 
WIPF1                 0.008   WAS/WASL interacting protein family, member 1 [Homo...
WIPF1                 0.008   WAS/WASL interacting protein family, member 1 
MAP1A                 0.008   microtubule-associated protein 1A 
KCNK4                 0.008   TRAAK 
MEGF11                0.007   multiple EGF-like-domains 11 
EIF4G1                0.007   eukaryotic translation initiation factor 4 gamma, 1 ...
EIF4G1                0.007   eukaryotic translation initiation factor 4 gamma, 1 ...
STAB2                 0.007   stabilin 2 precursor 
SCAMP1                0.007   secretory carrier membrane protein 1 
ANO8                  0.006   anoctamin 8 
ATRN                  0.006   attractin isoform 2 
ATRN                  0.006   attractin isoform 1 
PELP1                 0.006   proline, glutamic acid and leucine rich protein 1 [...
ZC3H10                0.006   zinc finger CCCH-type containing 10 
MAGEE1                0.006   melanoma antigen family E, 1 
ODZ2                  0.006   odz, odd Oz/ten-m homolog 2 
SCARF2                0.006   scavenger receptor class F, member 2 isoform 1 [Homo...
SCARF2                0.006   scavenger receptor class F, member 2 isoform 2 [Homo...
MEGF6                 0.006   EGF-like-domain, multiple 3 
ODZ1                  0.006   odz, odd Oz/ten-m homolog 1 isoform 3 
ODZ1                  0.006   odz, odd Oz/ten-m homolog 1 isoform 2 
ODZ1                  0.006   odz, odd Oz/ten-m homolog 1 isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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