Guide to the Human Genome
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Name: TMEM8B Sequence: fasta or formatted (338aa) NCBI GI: 27552764
Description:

transmembrane protein 8B isoform b

Not currently referenced in the text

Other entries for this name:
alt prot {472aa} transmembrane protein 8B isoform a
alt prot {472aa} transmembrane protein 8B isoform a
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.1         24           2
 C cysteine            5.6         19           1
 D aspartate           2.4          8           2
 E glutamate           4.1         14           1
 F phenylalanine       5.3         18           2
 G glycine             7.4         25           2
 H histidine           1.8          6           1
 I isoleucine          1.8          6           1
 K lysine              1.8          6           1
 L leucine            13.6         46           3
 M methionine          2.1          7           1
 N asparagine          2.7          9           1
 P proline             8.0         27           2
 Q glutamine           2.4          8           1
 R arginine            5.3         18           1
 S serine              8.3         28           2
 T threonine           8.0         27           2
 V valine              8.0         27           2
 W tryptophan          2.4          8           3
 Y tyrosine            2.1          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   transmembrane protein 8B isoform b 
TMEM8B                0.791   transmembrane protein 8B isoform a 
TMEM8B                0.791   transmembrane protein 8B isoform a 
TMEM8A                0.273   transmembrane protein 8 (five membrane-spanning dom...
TMEM8C                0.022   transmembrane protein 8C 
MEGF10                0.022   multiple EGF-like-domains 10 
KLF1                  0.013   Kruppel-like factor 1 (erythroid) 
THBS1                 0.012   thrombospondin 1 precursor 
WIPF1                 0.012   WAS/WASL interacting protein family, member 1 [Homo...
WIPF1                 0.012   WAS/WASL interacting protein family, member 1 
MAP1A                 0.012   microtubule-associated protein 1A 
KCNK4                 0.012   TRAAK 
MEGF11                0.010   multiple EGF-like-domains 11 
EIF4G1                0.010   eukaryotic translation initiation factor 4 gamma, 1 ...
EIF4G1                0.010   eukaryotic translation initiation factor 4 gamma, 1 ...
STAB2                 0.010   stabilin 2 precursor 
ANO8                  0.009   anoctamin 8 
ATRN                  0.009   attractin isoform 2 
ATRN                  0.009   attractin isoform 1 
PELP1                 0.009   proline, glutamic acid and leucine rich protein 1 [...
ZC3H10                0.009   zinc finger CCCH-type containing 10 
MAGEE1                0.009   melanoma antigen family E, 1 
ODZ2                  0.009   odz, odd Oz/ten-m homolog 2 
SCARF2                0.009   scavenger receptor class F, member 2 isoform 1 [Homo...
SCARF2                0.009   scavenger receptor class F, member 2 isoform 2 [Homo...
MEGF6                 0.009   EGF-like-domain, multiple 3 
ODZ1                  0.009   odz, odd Oz/ten-m homolog 1 isoform 3 
ODZ1                  0.009   odz, odd Oz/ten-m homolog 1 isoform 2 
ODZ1                  0.009   odz, odd Oz/ten-m homolog 1 isoform 1 
ADAM15                0.009   a disintegrin and metalloproteinase domain 15 isofor...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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