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Search of human proteins with 110556629
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|110556629 transmembrane protein 145 [Homo sapiens]
(493 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|110556629 transmembrane protein 145 [Homo sapiens] 1007 0.0
gi|30725877 G protein-coupled receptor 180 precursor [Homo sapiens] 67 3e-11
gi|189217919 protein associated with topoisomerase II homolog 1 ... 35 0.20
gi|33946327 nucleoporin 214kDa [Homo sapiens] 32 1.3
gi|58331148 matrix metalloproteinase 11 preproprotein [Homo sapi... 32 1.3
gi|5454086 sushi-repeat-containing protein, X-linked [Homo sapiens] 32 1.7
gi|29789060 hypothetical protein LOC9847 [Homo sapiens] 31 2.3
gi|10863987 zona pellucida glycoprotein 4 preproprotein [Homo sa... 31 2.9
gi|27886557 msh homeobox 2 [Homo sapiens] 30 3.8
gi|209180481 Cas-Br-M (murine) ecotropic retroviral transforming... 30 3.8
gi|31083156 interleukin 20 receptor, alpha [Homo sapiens] 30 3.8
gi|169167066 PREDICTED: hypothetical protein [Homo sapiens] 30 5.0
gi|113416187 PREDICTED: hypothetical protein [Homo sapiens] 30 5.0
gi|113415691 PREDICTED: hypothetical protein [Homo sapiens] 30 5.0
gi|21703710 scotin [Homo sapiens] 30 5.0
gi|33942072 trinucleotide repeat containing 5 [Homo sapiens] 30 5.0
gi|116284398 WAS/WASL interacting protein family, member 1 [Homo... 30 6.6
gi|38373695 WAS/WASL interacting protein family, member 1 [Homo ... 30 6.6
gi|11496971 NMDA receptor 1 isoform NR1-1 precursor [Homo sapiens] 30 6.6
gi|11038637 NMDA receptor 1 isoform NR1-3 precursor [Homo sapiens] 30 6.6
gi|11038635 NMDA receptor 1 isoform NR1-2 precursor [Homo sapiens] 30 6.6
gi|120587025 SH3 and multiple ankyrin repeat domains 1 [Homo sap... 30 6.6
gi|5174543 myocyte enhancer factor 2B isoform b [Homo sapiens] 29 8.6
gi|223029426 solute carrier family 35, member D2 [Homo sapiens] 29 8.6
gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens] 29 8.6
gi|206597502 NESH protein isoform 2 [Homo sapiens] 29 8.6
gi|7705981 NESH protein isoform 1 [Homo sapiens] 29 8.6
gi|22547159 tetratricopeptide repeat domain 19 [Homo sapiens] 29 8.6
>gi|110556629 transmembrane protein 145 [Homo sapiens]
Length = 493
Score = 1007 bits (2603), Expect = 0.0
Identities = 493/493 (100%), Positives = 493/493 (100%)
Query: 1 MEPLRAPALRRLLPPLLLLLLSLPPRARAKYVRGNLSSKEDWVFLTRFCFLSDYGRLDFR 60
MEPLRAPALRRLLPPLLLLLLSLPPRARAKYVRGNLSSKEDWVFLTRFCFLSDYGRLDFR
Sbjct: 1 MEPLRAPALRRLLPPLLLLLLSLPPRARAKYVRGNLSSKEDWVFLTRFCFLSDYGRLDFR 60
Query: 61 FRYPEAKCCQNILLYFDDPSQWPAVYKAGDKDCLAKESVIRPENNQVINLTTQYAWSGCQ 120
FRYPEAKCCQNILLYFDDPSQWPAVYKAGDKDCLAKESVIRPENNQVINLTTQYAWSGCQ
Sbjct: 61 FRYPEAKCCQNILLYFDDPSQWPAVYKAGDKDCLAKESVIRPENNQVINLTTQYAWSGCQ 120
Query: 121 VVSEEGTRYLSCSSGRSFRSGDGLQLEYEMVLTNGKSFWTRHFSADEFGILETDVTFLLI 180
VVSEEGTRYLSCSSGRSFRSGDGLQLEYEMVLTNGKSFWTRHFSADEFGILETDVTFLLI
Sbjct: 121 VVSEEGTRYLSCSSGRSFRSGDGLQLEYEMVLTNGKSFWTRHFSADEFGILETDVTFLLI 180
Query: 181 FILIFFLSCYFGYLLKGRQLLHTTYKMFMAAAGVEVLSLLFFCIYWGQYATDGIGNESVK 240
FILIFFLSCYFGYLLKGRQLLHTTYKMFMAAAGVEVLSLLFFCIYWGQYATDGIGNESVK
Sbjct: 181 FILIFFLSCYFGYLLKGRQLLHTTYKMFMAAAGVEVLSLLFFCIYWGQYATDGIGNESVK 240
Query: 241 ILAKLLFSSSFLIFLLMLILLGKGFTVTRGRISHAGSVKLSVYMTLYTLTHVVLLIYEAE 300
ILAKLLFSSSFLIFLLMLILLGKGFTVTRGRISHAGSVKLSVYMTLYTLTHVVLLIYEAE
Sbjct: 241 ILAKLLFSSSFLIFLLMLILLGKGFTVTRGRISHAGSVKLSVYMTLYTLTHVVLLIYEAE 300
Query: 301 FFDPGQVLYTYESPAGYGLIGLQVAAYVWFCYAVLVSLRHFPEKQPFYVPFFAAYTLWFF 360
FFDPGQVLYTYESPAGYGLIGLQVAAYVWFCYAVLVSLRHFPEKQPFYVPFFAAYTLWFF
Sbjct: 301 FFDPGQVLYTYESPAGYGLIGLQVAAYVWFCYAVLVSLRHFPEKQPFYVPFFAAYTLWFF 360
Query: 361 AVPVMALIANFGIPKWAREKIVNGIQLGIHLYAHGVFLIMTRPSAANKNFPYHVRTSQIA 420
AVPVMALIANFGIPKWAREKIVNGIQLGIHLYAHGVFLIMTRPSAANKNFPYHVRTSQIA
Sbjct: 361 AVPVMALIANFGIPKWAREKIVNGIQLGIHLYAHGVFLIMTRPSAANKNFPYHVRTSQIA 420
Query: 421 SAGVPGPGGSQSADKAFPQHVYGNVTFISDSVPNFTELFSIPPPATSPLPRAAPDSGLPL 480
SAGVPGPGGSQSADKAFPQHVYGNVTFISDSVPNFTELFSIPPPATSPLPRAAPDSGLPL
Sbjct: 421 SAGVPGPGGSQSADKAFPQHVYGNVTFISDSVPNFTELFSIPPPATSPLPRAAPDSGLPL 480
Query: 481 FRDLRPPGPLRDL 493
FRDLRPPGPLRDL
Sbjct: 481 FRDLRPPGPLRDL 493
>gi|30725877 G protein-coupled receptor 180 precursor [Homo sapiens]
Length = 440
Score = 67.4 bits (163), Expect = 3e-11
Identities = 93/390 (23%), Positives = 163/390 (41%), Gaps = 47/390 (12%)
Query: 24 PPRARAKYVRGNLSSKE----DWVFLTRFCFLSDYGRLDFRFRYPEAKCCQNILLYFDDP 79
P ++ K +RG+ SS + F F D+ L R + LY
Sbjct: 17 PQGSQGKTLRGSFSSTAAQDAQGQRIGHFEFHGDHALLCVRINNIAVAVGKEAKLYLFQA 76
Query: 80 SQWPAVYKAGD----KDCLAKESVIRPENNQVINLTTQYAWSGCQVVSEEGTRYLSCSSG 135
+W + ++ + L+K + N NLT Q+ S +
Sbjct: 77 QEWLKLQQSSHGYSCSEKLSKAQLTMTMNQTEHNLTVS------QIPSPQTWHVFYADKY 130
Query: 136 RSFRSGDGLQLE---YEMVLTN----GKSFWTRHFSADEFGILETDVTFLLIFILIFFLS 188
+ Q+E +EMVL N G F HFSA E G+ E F L+ ++ F ++
Sbjct: 131 TCQDDKENSQVEDIPFEMVLLNPDAEGNPF--DHFSAGESGLHEF---FFLLVLVYFVIA 185
Query: 189 CYFGYLL----KGRQLLHTTYKMFMAAAGVEVLSLLFFCIYWGQYATDGIGNESVKILAK 244
C + L K +H K+ A ++ S L I++ Y+ DGIG + LA+
Sbjct: 186 CIYAQSLWQAIKKGGPMHMILKVLTTALLLQAGSALANYIHFSSYSKDGIGVPFMGSLAE 245
Query: 245 LLFSSSFLIFLLMLILLGKGFTVTRGRISHA---------GSVKLSVYMTLYTLTHVVLL 295
+S + L +L+ L G+T+ R + S + S ++V++ +T VLL
Sbjct: 246 FFDIASQIQMLYLLLSLCMGWTIVRMKKSQSRPLQWDSTPASTGIAVFI---VMTQSVLL 302
Query: 296 IYEAEFFDPGQVLY-TYESPAGYGLIGLQVAAYVWFCYAV--LVSLRHFPEKQPFYVPFF 352
++E +F D Y ++ + AG LI L++ + + ++++ K+ FY+ F
Sbjct: 303 LWE-QFEDISHHSYHSHHNLAGILLIVLRICLALSLGCGLYQIITVERSTLKREFYITFA 361
Query: 353 AAYTLWFFAVPVMALIANFGIPKWAREKIV 382
LWF PV+A I+ + R+K++
Sbjct: 362 KGCILWFLCHPVLACISVI-FSDYQRDKVI 390
>gi|189217919 protein associated with topoisomerase II homolog 1
[Homo sapiens]
Length = 770
Score = 34.7 bits (78), Expect = 0.20
Identities = 27/76 (35%), Positives = 34/76 (44%), Gaps = 2/76 (2%)
Query: 415 RTSQIASAGVPGPGGSQSADKAFPQHVYGNVTFISDSVPNFTELFSIPPPATSPLPRAAP 474
R S A VPG GS A P+ + G V + P F FS PP AT P P+ P
Sbjct: 276 RMSPSQFARVPGFVGSPLAAMN-PKLLQGRVGQMLPPAPGFRAFFSAPPSATPP-PQQHP 333
Query: 475 DSGLPLFRDLRPPGPL 490
P ++LR P+
Sbjct: 334 PGPGPHLQNLRSQAPM 349
>gi|33946327 nucleoporin 214kDa [Homo sapiens]
Length = 2090
Score = 32.0 bits (71), Expect = 1.3
Identities = 18/65 (27%), Positives = 27/65 (41%), Gaps = 1/65 (1%)
Query: 416 TSQIASAGVPGPGGSQSADKAFPQHVYGNVTFISDSVPNFTELFSIPPPATSPLPR-AAP 474
T Q++S+G P +A F Q +G + S + +FS P S +P P
Sbjct: 1700 TPQVSSSGFSSPAFGTTAPGVFGQTTFGQASVFGQSASSAASVFSFSQPGFSSVPAFGQP 1759
Query: 475 DSGLP 479
S P
Sbjct: 1760 ASSTP 1764
>gi|58331148 matrix metalloproteinase 11 preproprotein [Homo
sapiens]
Length = 488
Score = 32.0 bits (71), Expect = 1.3
Identities = 15/22 (68%), Positives = 17/22 (77%)
Query: 4 LRAPALRRLLPPLLLLLLSLPP 25
LR+ A R LLPP+LLLLL PP
Sbjct: 7 LRSAAARALLPPMLLLLLQPPP 28
>gi|5454086 sushi-repeat-containing protein, X-linked [Homo
sapiens]
Length = 464
Score = 31.6 bits (70), Expect = 1.7
Identities = 19/41 (46%), Positives = 24/41 (58%)
Query: 3 PLRAPALRRLLPPLLLLLLSLPPRARAKYVRGNLSSKEDWV 43
P PAL LLPPLLLLLL P +R+ G+ ++D V
Sbjct: 4 PAHRPALLLLLPPLLLLLLLRVPPSRSFPGSGDSPLEDDEV 44
>gi|29789060 hypothetical protein LOC9847 [Homo sapiens]
Length = 1000
Score = 31.2 bits (69), Expect = 2.3
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 5/51 (9%)
Query: 422 AGVPGPGGSQSADK-----AFPQHVYGNVTFISDSVPNFTELFSIPPPATS 467
A +P PGG Q A K ++ QH+ I+D++ EL+ I PP S
Sbjct: 587 AALPTPGGIQIAGKTPNDGSYEQHISHMQKKINDTIAKNKELYEINPPEIS 637
>gi|10863987 zona pellucida glycoprotein 4 preproprotein [Homo
sapiens]
Length = 540
Score = 30.8 bits (68), Expect = 2.9
Identities = 15/45 (33%), Positives = 24/45 (53%)
Query: 426 GPGGSQSADKAFPQHVYGNVTFISDSVPNFTELFSIPPPATSPLP 470
G GS + D F HV + + S+S+P ++F++PPP P
Sbjct: 268 GSRGSVTRDSIFRLHVSCSYSVSSNSLPINVQVFTLPPPFPETQP 312
>gi|27886557 msh homeobox 2 [Homo sapiens]
Length = 267
Score = 30.4 bits (67), Expect = 3.8
Identities = 26/100 (26%), Positives = 41/100 (41%), Gaps = 14/100 (14%)
Query: 400 MTRPSAANKNFPYHVRTSQIASAGVPGPGGSQSADKAFPQHVYGNVTFISDSVPNFTELF 459
M PS N F + + PGPGG++ A + V ++ F +++ + +
Sbjct: 1 MASPSKGNDLFSPDEEGPAVVAGPGPGPGGAEGAAEERRVKV-SSLPFSVEALMSDKK-- 57
Query: 460 SIPPPATSPLPRAAPDSGLPL---------FRDLRPPGPL 490
PP SPLP + +G L R+ PGPL
Sbjct: 58 --PPKEASPLPAESASAGATLRPLLLSGHGAREAHSPGPL 95
>gi|209180481 Cas-Br-M (murine) ecotropic retroviral transforming
sequence-like 1 [Homo sapiens]
Length = 491
Score = 30.4 bits (67), Expect = 3.8
Identities = 23/84 (27%), Positives = 29/84 (34%), Gaps = 13/84 (15%)
Query: 411 PYHVRTSQIASAGVPGPGGSQSADKAFPQHVYGNVTFISDSVPNFTELFSIPPPATSPLP 470
P+H+ Q A P P S P G + P PPP TS P
Sbjct: 331 PHHIMPPQQHYAPPPPPPPPISHPMPHPPQAAGTPHLVYSQAP--------PPPMTSAPP 382
Query: 471 RAAPDSG-----LPLFRDLRPPGP 489
P G +P + + PPGP
Sbjct: 383 PITPPPGHIIAQMPPYMNHPPPGP 406
>gi|31083156 interleukin 20 receptor, alpha [Homo sapiens]
Length = 553
Score = 30.4 bits (67), Expect = 3.8
Identities = 20/41 (48%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 7 PALRRL-LPPLLLLLLSLPPRARAKYVRGNLSSKEDWVFLT 46
PALR L LPPLLLLLL+ P V G L + FL+
Sbjct: 7 PALRPLPLPPLLLLLLAAPWGRAVPCVSGGLPKPANITFLS 47
>gi|169167066 PREDICTED: hypothetical protein [Homo sapiens]
Length = 262
Score = 30.0 bits (66), Expect = 5.0
Identities = 17/41 (41%), Positives = 20/41 (48%), Gaps = 8/41 (19%)
Query: 449 SDSVPNFTELFSIPPPATSPLPRAAPDSGLPLFRDLRPPGP 489
+D+VP T + PPP P PR P LP PPGP
Sbjct: 23 ADTVPGTT--YPPPPPPPPPTPRPPPPPPLP------PPGP 55
>gi|113416187 PREDICTED: hypothetical protein [Homo sapiens]
Length = 262
Score = 30.0 bits (66), Expect = 5.0
Identities = 17/41 (41%), Positives = 20/41 (48%), Gaps = 8/41 (19%)
Query: 449 SDSVPNFTELFSIPPPATSPLPRAAPDSGLPLFRDLRPPGP 489
+D+VP T + PPP P PR P LP PPGP
Sbjct: 23 ADTVPGTT--YPPPPPPPPPTPRPPPPPPLP------PPGP 55
>gi|113415691 PREDICTED: hypothetical protein [Homo sapiens]
Length = 262
Score = 30.0 bits (66), Expect = 5.0
Identities = 17/41 (41%), Positives = 20/41 (48%), Gaps = 8/41 (19%)
Query: 449 SDSVPNFTELFSIPPPATSPLPRAAPDSGLPLFRDLRPPGP 489
+D+VP T + PPP P PR P LP PPGP
Sbjct: 23 ADTVPGTT--YPPPPPPPPPTPRPPPPPPLP------PPGP 55
>gi|21703710 scotin [Homo sapiens]
Length = 240
Score = 30.0 bits (66), Expect = 5.0
Identities = 16/24 (66%), Positives = 18/24 (75%)
Query: 7 PALRRLLPPLLLLLLSLPPRARAK 30
PA R LLP LLLLLL+ PP AR +
Sbjct: 6 PAPRILLPLLLLLLLTPPPGARGE 29
>gi|33942072 trinucleotide repeat containing 5 [Homo sapiens]
Length = 278
Score = 30.0 bits (66), Expect = 5.0
Identities = 23/67 (34%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Query: 1 MEPLRAPALR--RLLPPLLLLLLSLPPRARAKYVRGNLSSKEDWVFLTRFCFLSDYGRLD 58
M+ + PA R LLP LLLLLL LP G + + DWV L C + Y ++
Sbjct: 1 MDSMPEPASRCLLLLPLLLLLLLLLPAPELGPSQAG--AEENDWVRLPSKCEVCKYVAVE 58
Query: 59 FRFRYPE 65
+ + E
Sbjct: 59 LKSAFEE 65
>gi|116284398 WAS/WASL interacting protein family, member 1 [Homo
sapiens]
Length = 503
Score = 29.6 bits (65), Expect = 6.6
Identities = 24/82 (29%), Positives = 29/82 (35%), Gaps = 5/82 (6%)
Query: 411 PYHVRTSQIASAGVPGPGGSQSADKAFPQHVYGNVTFISDSVPNFTELFSIPPPATSPLP 470
P R S + A P P S+ P GN D P + +T PLP
Sbjct: 295 PSTPRPSASSQAPPPPPPPSRPGPPPLPPSSSGN-----DETPRLPQRNLSLSSSTPPLP 349
Query: 471 RAAPDSGLPLFRDLRPPGPLRD 492
LP RPP P+RD
Sbjct: 350 SPGRSGPLPPPPSERPPPPVRD 371
>gi|38373695 WAS/WASL interacting protein family, member 1 [Homo
sapiens]
Length = 503
Score = 29.6 bits (65), Expect = 6.6
Identities = 24/82 (29%), Positives = 29/82 (35%), Gaps = 5/82 (6%)
Query: 411 PYHVRTSQIASAGVPGPGGSQSADKAFPQHVYGNVTFISDSVPNFTELFSIPPPATSPLP 470
P R S + A P P S+ P GN D P + +T PLP
Sbjct: 295 PSTPRPSASSQAPPPPPPPSRPGPPPLPPSSSGN-----DETPRLPQRNLSLSSSTPPLP 349
Query: 471 RAAPDSGLPLFRDLRPPGPLRD 492
LP RPP P+RD
Sbjct: 350 SPGRSGPLPPPPSERPPPPVRD 371
>gi|11496971 NMDA receptor 1 isoform NR1-1 precursor [Homo sapiens]
Length = 885
Score = 29.6 bits (65), Expect = 6.6
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 332 YAVLVSLRHFPEKQPFYVPFFAAYTLWFFAVPVMALIANFGI 373
YA+LVS H P + P +YT F+ +PV+ L I
Sbjct: 88 YAILVS--HPPTPNDHFTPTPVSYTAGFYRIPVLGLTTRMSI 127
>gi|11038637 NMDA receptor 1 isoform NR1-3 precursor [Homo sapiens]
Length = 938
Score = 29.6 bits (65), Expect = 6.6
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 332 YAVLVSLRHFPEKQPFYVPFFAAYTLWFFAVPVMALIANFGI 373
YA+LVS H P + P +YT F+ +PV+ L I
Sbjct: 88 YAILVS--HPPTPNDHFTPTPVSYTAGFYRIPVLGLTTRMSI 127
>gi|11038635 NMDA receptor 1 isoform NR1-2 precursor [Homo sapiens]
Length = 901
Score = 29.6 bits (65), Expect = 6.6
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 332 YAVLVSLRHFPEKQPFYVPFFAAYTLWFFAVPVMALIANFGI 373
YA+LVS H P + P +YT F+ +PV+ L I
Sbjct: 88 YAILVS--HPPTPNDHFTPTPVSYTAGFYRIPVLGLTTRMSI 127
>gi|120587025 SH3 and multiple ankyrin repeat domains 1 [Homo sapiens]
Length = 2161
Score = 29.6 bits (65), Expect = 6.6
Identities = 17/34 (50%), Positives = 22/34 (64%), Gaps = 3/34 (8%)
Query: 460 SIPPPATSPLPRAAPDSGLPLFRDLRPPGPLRDL 493
S+PP TSP RA+ ++GLPL L PP P D+
Sbjct: 1526 SVPPSPTSP--RASEENGLPLL-VLPPPAPSVDV 1556
>gi|5174543 myocyte enhancer factor 2B isoform b [Homo sapiens]
Length = 365
Score = 29.3 bits (64), Expect = 8.6
Identities = 21/75 (28%), Positives = 30/75 (40%), Gaps = 5/75 (6%)
Query: 414 VRTSQIASAGVPGPGGSQSADKAFPQHVYGNVTFISDSVPNFTELFSIPPPATSPLPRAA 473
+ TS+ +G+ P A P G+ F+ P E ++ P + PR
Sbjct: 222 LNTSRSLYSGLQNP-----CSTATPGPPLGSFPFLPGGPPVGAEAWARRVPQPAAPPRRP 276
Query: 474 PDSGLPLFRDLRPPG 488
P S L LRPPG
Sbjct: 277 PQSASSLSASLRPPG 291
>gi|223029426 solute carrier family 35, member D2 [Homo sapiens]
Length = 337
Score = 29.3 bits (64), Expect = 8.6
Identities = 14/36 (38%), Positives = 21/36 (58%)
Query: 179 LIFILIFFLSCYFGYLLKGRQLLHTTYKMFMAAAGV 214
++FIL F LSC+ G+LL +L + Y + A V
Sbjct: 238 VVFILQFLLSCFLGFLLMYSTVLCSYYNSALTTAVV 273
>gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens]
Length = 1838
Score = 29.3 bits (64), Expect = 8.6
Identities = 14/18 (77%), Positives = 15/18 (83%)
Query: 12 LLPPLLLLLLSLPPRARA 29
LLPPLLLLLL PP +RA
Sbjct: 19 LLPPLLLLLLWAPPPSRA 36
>gi|206597502 NESH protein isoform 2 [Homo sapiens]
Length = 360
Score = 29.3 bits (64), Expect = 8.6
Identities = 27/76 (35%), Positives = 33/76 (43%), Gaps = 3/76 (3%)
Query: 417 SQIASAG-VPGPGGSQSAD-KAFPQHVYGNVTFISDSVPNFTELFSIPPPATSPLPRAAP 474
S +ASAG G GG+ + +A P + P E+F PP L P
Sbjct: 203 SSLASAGSAEGVGGAPTPKGQAAPPAPPLPSSLDPPPPPAAVEVFQ-RPPTLEELSPPPP 261
Query: 475 DSGLPLFRDLRPPGPL 490
D LPL DL PP PL
Sbjct: 262 DEELPLPLDLPPPPPL 277
>gi|7705981 NESH protein isoform 1 [Homo sapiens]
Length = 366
Score = 29.3 bits (64), Expect = 8.6
Identities = 27/76 (35%), Positives = 33/76 (43%), Gaps = 3/76 (3%)
Query: 417 SQIASAG-VPGPGGSQSAD-KAFPQHVYGNVTFISDSVPNFTELFSIPPPATSPLPRAAP 474
S +ASAG G GG+ + +A P + P E+F PP L P
Sbjct: 209 SSLASAGSAEGVGGAPTPKGQAAPPAPPLPSSLDPPPPPAAVEVFQ-RPPTLEELSPPPP 267
Query: 475 DSGLPLFRDLRPPGPL 490
D LPL DL PP PL
Sbjct: 268 DEELPLPLDLPPPPPL 283
>gi|22547159 tetratricopeptide repeat domain 19 [Homo sapiens]
Length = 501
Score = 29.3 bits (64), Expect = 8.6
Identities = 16/39 (41%), Positives = 19/39 (48%)
Query: 451 SVPNFTELFSIPPPATSPLPRAAPDSGLPLFRDLRPPGP 489
SVP F + PPP+ S P P + P R RPP P
Sbjct: 8 SVPYFARSPAPPPPSRSGAPPQPPATLRPSRRRTRPPRP 46
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.327 0.142 0.450
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,243,645
Number of Sequences: 37866
Number of extensions: 964260
Number of successful extensions: 4113
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 4088
Number of HSP's gapped (non-prelim): 39
length of query: 493
length of database: 18,247,518
effective HSP length: 106
effective length of query: 387
effective length of database: 14,233,722
effective search space: 5508450414
effective search space used: 5508450414
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.