Guide to the Human Genome
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Name: CNPY3 Sequence: fasta or formatted (278aa) NCBI GI: 33942072
Description:

trinucleotide repeat containing 5

Referenced in:

Toll-like Receptors

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.5         18           2
 C cysteine            2.5          7           1
 D aspartate           5.4         15           1
 E glutamate          11.5         32           2
 F phenylalanine       1.8          5           1
 G glycine             7.6         21           2
 H histidine           2.2          6           1
 I isoleucine          2.5          7           1
 K lysine             10.1         28           3
 L leucine            12.9         36           9
 M methionine          1.4          4           1
 N asparagine          2.2          6           1
 P proline             4.7         13           2
 Q glutamine           2.5          7           1
 R arginine            3.6         10           1
 S serine              8.3         23           4
 T threonine           5.0         14           1
 V valine              5.8         16           2
 W tryptophan          1.4          4           1
 Y tyrosine            2.2          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   trinucleotide repeat containing 5 
CNPY4                 0.325   canopy 4 homolog 
CRELD2                0.026   cysteine-rich with EGF-like domains 2 isoform b [Ho...
CRELD2                0.026   cysteine-rich with EGF-like domains 2 isoform a [Ho...
CNPY2                 0.022   canopy 2 homolog 
PPFIBP1               0.021   PTPRF interacting protein binding protein 1 isoform ...
CYTSB                 0.019   spectrin domain with coiled-coils 1 NSP5a3b 
CYTSB                 0.019   spectrin domain with coiled-coils 1 NSP5a3a 
CYTSB                 0.019   spectrin domain with coiled-coils 1 NSP5b3b 
CYTSB                 0.019   spectrin domain with coiled-coils 1 NSP5b3a 
ALPK3                 0.017   alpha-kinase 3 
BAHD1                 0.015   bromo adjacent homology domain containing 1 
ASTN2                 0.015   astrotactin 2 isoform c 
ASTN2                 0.015   astrotactin 2 isoform b 
ASTN2                 0.015   astrotactin 2 isoform a 
PCDHAC2               0.015   protocadherin alpha subfamily C, 2 isoform 1 precurso...
PCDHAC2               0.015   protocadherin alpha subfamily C, 2 isoform 2 precurs...
KAZALD1               0.013   Kazal-type serine peptidase inhibitor domain 1 precu...
MYO9B                 0.011   myosin IXB isoform 2 
MYO9B                 0.011   myosin IXB isoform 1 
SLTM                  0.011   modulator of estrogen induced transcription isoform ...
TMEM169               0.011   transmembrane protein 169 
TMEM169               0.011   transmembrane protein 169 
TMEM169               0.011   transmembrane protein 169 
TMEM169               0.011   transmembrane protein 169 
ARL6IP4               0.011   SRp25 nuclear protein isoform 3 
PDAP1                 0.011   PDGFA associated protein 1 
TTC3                  0.011   tetratricopeptide repeat domain 3 
TTC3                  0.011   tetratricopeptide repeat domain 3 
HDGFRP3               0.009   hepatoma-derived growth factor, related protein 3 [Ho...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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