Guide to the Human Genome
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Name: GPR180 Sequence: fasta or formatted (440aa) NCBI GI: 30725877
Description:

G protein-coupled receptor 180 precursor

Referenced in:

Cardiovascular System

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.6         29           2
 C cysteine            3.0         13           2
 D aspartate           3.2         14           2
 E glutamate           3.9         17           1
 F phenylalanine       5.5         24           3
 G glycine             6.1         27           2
 H histidine           4.3         19           2
 I isoleucine          7.0         31           2
 K lysine              4.1         18           2
 L leucine            13.0         57           3
 M methionine          2.7         12           1
 N asparagine          2.0          9           2
 P proline             3.0         13           1
 Q glutamine           6.1         27           2
 R arginine            2.7         12           1
 S serine             10.2         45           2
 T threonine           4.8         21           2
 V valine              6.1         27           1
 W tryptophan          2.3         10           2
 Y tyrosine            3.4         15           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   G protein-coupled receptor 180 precursor 
TMEM145               0.048   transmembrane protein 145 
NOX4                  0.006   NADPH oxidase 4 isoform b 
NOX4                  0.006   NADPH oxidase 4 isoform a 
LOC100292152          0.006   PREDICTED: hypothetical protein 
LOC100290750          0.006   PREDICTED: hypothetical protein XP_002347200 
LOC100286977          0.006   PREDICTED: hypothetical protein XP_002343055 
NIPA2                 0.006   non imprinted in Prader-Willi/Angelman syndrome 2 is...
NIPA2                 0.006   non imprinted in Prader-Willi/Angelman syndrome 2 is...
NIPA2                 0.006   non imprinted in Prader-Willi/Angelman syndrome 2 is...
NIPA2                 0.006   non imprinted in Prader-Willi/Angelman syndrome 2 is...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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