Guide to the Human Genome
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Name: KIAA0528 Sequence: fasta or formatted (1000aa) NCBI GI: 29789060
Description:

hypothetical protein LOC9847

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.6         66           2
 C cysteine            2.7         27           2
 D aspartate           4.9         49           2
 E glutamate           6.9         69           2
 F phenylalanine       4.5         45           2
 G glycine             5.9         59           2
 H histidine           2.0         20           1
 I isoleucine          5.7         57           2
 K lysine              5.3         53           3
 L leucine             9.3         93           2
 M methionine          2.3         23           1
 N asparagine          5.1         51           2
 P proline             6.0         60           3
 Q glutamine           4.0         40           2
 R arginine            4.2         42           1
 S serine              8.1         81           4
 T threonine           6.5         65           2
 V valine              7.1         71           3
 W tryptophan          0.7          7           2
 Y tyrosine            2.2         22           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC9847 
SYT1                  0.016   synaptotagmin I 
SYT1                  0.016   synaptotagmin I 
SYT1                  0.016   synaptotagmin I 
SYT2                  0.015   synaptotagmin II 
SYT2                  0.015   synaptotagmin II 
LOC100132214          0.015   PREDICTED: similar to calcium-promoted Ras inactiva...
LOC100132214          0.015   PREDICTED: similar to calcium-promoted Ras inactiva...
LOC100132214          0.015   PREDICTED: similar to calcium-promoted Ras inactiva...
LOC100132214          0.015   PREDICTED: similar to calcium-promoted Ras inactiva...
RASA4                 0.015   RAS p21 protein activator 4 isoform 2 
RASA4                 0.015   RAS p21 protein activator 4 isoform 1 
MCTP1                 0.015   multiple C2 domains, transmembrane 1 isoform S [Homo...
MCTP1                 0.015   multiple C2 domains, transmembrane 1 isoform L [Hom...
SYT7                  0.014   synaptotagmin VII 
PCLO                  0.013   piccolo isoform 2 
PCLO                  0.013   piccolo isoform 1 
ESYT1                 0.013   extended synaptotagmin-like protein 1 
SYT5                  0.013   synaptotagmin V 
DOC2B                 0.013   double C2-like domains, beta 
LOC390213             0.012   PREDICTED: similar to hCG21066 
LOC390213             0.012   PREDICTED: similar to hCG21066 
LOC390213             0.012   PREDICTED: hypothetical protein LOC390213 
SYT3                  0.012   synaptotagmin III 
SYT3                  0.012   synaptotagmin III 
SYT3                  0.012   synaptotagmin III 
RPH3A                 0.012   rabphilin 3A homolog isoform 1 
RPH3A                 0.012   rabphilin 3A homolog isoform 2 
MCTP2                 0.011   multiple C2 domains, transmembrane 2 isoform 2 [Hom...
MCTP2                 0.011   multiple C2 domains, transmembrane 2 isoform 1 [Hom...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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