Guide to the Human Genome
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Name: GRIN1 Sequence: fasta or formatted (938aa) NCBI GI: 11038637
Description:

NMDA receptor 1 isoform NR1-3 precursor

Referenced in:

Glutamate

Other entries for this name:
alt prot [901aa] NMDA receptor 1 isoform NR1-2 precursor
alt prot [885aa] NMDA receptor 1 isoform NR1-1 precursor
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.7         72           3
 C cysteine            1.3         12           2
 D aspartate           4.4         41           2
 E glutamate           6.3         59           5
 F phenylalanine       4.4         41           2
 G glycine             6.4         60           3
 H histidine           2.3         22           1
 I isoleucine          5.7         53           2
 K lysine              5.8         54           3
 L leucine             8.7         82           2
 M methionine          3.1         29           2
 N asparagine          4.7         44           2
 P proline             4.2         39           2
 Q glutamine           3.6         34           1
 R arginine            6.5         61           3
 S serine              7.8         73           2
 T threonine           5.8         54           2
 V valine              7.1         67           2
 W tryptophan          1.6         15           1
 Y tyrosine            2.8         26           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   NMDA receptor 1 isoform NR1-3 precursor 
GRIN1                 0.952   NMDA receptor 1 isoform NR1-2 precursor 
GRIN1                 0.922   NMDA receptor 1 isoform NR1-1 precursor 
GRIN2B                0.155   N-methyl-D-aspartate receptor subunit 2B precursor ...
GRIN2A                0.147   N-methyl-D-aspartate receptor subunit 2A isoform 2 ...
GRIN2A                0.147   N-methyl-D-aspartate receptor subunit 2A isoform 1 ...
GRIN2A                0.147   N-methyl-D-aspartate receptor subunit 2A isoform 1 pr...
GRIN2C                0.134   N-methyl-D-aspartate receptor subunit 2C precursor [...
GRIK1                 0.130   glutamate receptor, ionotropic, kainate 1 isoform 2 ...
GRIN2D                0.129   N-methyl-D-aspartate receptor subunit 2D precursor ...
GRIK2                 0.126   glutamate receptor, ionotropic, kainate 2 isoform 1 ...
GRIK1                 0.124   glutamate receptor, ionotropic, kainate 1 isoform 1 p...
GRIK2                 0.123   glutamate receptor, ionotropic, kainate 2 isoform 2 ...
GRIN3A                0.123   glutamate receptor, ionotropic, N-methyl-D-aspartat...
GRIK5                 0.122   glutamate receptor KA2 precursor 
GRIK3                 0.120   glutamate receptor, ionotropic, kainate 3 precursor ...
GRIA1                 0.118   glutamate receptor, ionotropic, AMPA 1 isoform 1 [H...
GRIA1                 0.118   glutamate receptor, ionotropic, AMPA 1 isoform 2 [H...
GRIN3B                0.118   glutamate receptor, ionotropic, N-methyl-D-aspartate...
GRIK4                 0.117   glutamate receptor KA1 precursor 
GRIA2                 0.114   glutamate receptor, ionotropic, AMPA 2 isoform 2 pr...
GRIA2                 0.113   glutamate receptor, ionotropic, AMPA 2 isoform 3 [H...
GRIA2                 0.113   glutamate receptor, ionotropic, AMPA 2 isoform 1 pre...
GRIA3                 0.107   glutamate receptor, ionotrophic, AMPA 3 isoform 2 p...
GRIA3                 0.106   glutamate receptor, ionotrophic, AMPA 3 isoform 1 p...
GRIA4                 0.104   glutamate receptor, ionotrophic, AMPA 4 isoform 2 p...
GRIA4                 0.104   glutamate receptor, ionotrophic, AMPA 4 isoform 1 p...
GRID1                 0.096   glutamate receptor, ionotropic, delta 1 precursor [H...
GRID2                 0.093   glutamate receptor, ionotropic, delta 2 
CASR                  0.019   calcium-sensing receptor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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