Guide to the Human Genome
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Name: SRPX Sequence: fasta or formatted (464aa) NCBI GI: 5454086
Description:

sushi-repeat-containing protein, X-linked

Referenced in:

Additional Interaction Domain Families

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.0         28           3
 C cysteine            4.7         22           1
 D aspartate           4.7         22           2
 E glutamate           4.7         22           2
 F phenylalanine       2.4         11           1
 G glycine             8.0         37           2
 H histidine           1.3          6           1
 I isoleucine          3.7         17           1
 K lysine              6.0         28           1
 L leucine            11.2         52           7
 M methionine          2.8         13           1
 N asparagine          3.4         16           1
 P proline             7.3         34           2
 Q glutamine           3.2         15           2
 R arginine            6.9         32           2
 S serine              6.2         29           2
 T threonine           5.2         24           1
 V valine              6.7         31           2
 W tryptophan          1.1          5           1
 Y tyrosine            4.3         20           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   sushi-repeat-containing protein, X-linked 
SRPX2                 0.441   sushi-repeat-containing protein, X-linked 2 
SELE                  0.079   selectin E precursor 
CSMD2                 0.070   CUB and Sushi multiple domains 2 
SVEP1                 0.070   polydom 
CSMD1                 0.065   CUB and Sushi multiple domains 1 
SELP                  0.063   selectin P precursor 
CSMD3                 0.054   CUB and Sushi multiple domains 3 isoform 2 
CSMD3                 0.054   CUB and Sushi multiple domains 3 isoform 3 
CSMD3                 0.054   CUB and Sushi multiple domains 3 isoform 1 
CD46                  0.048   CD46 antigen, complement regulatory protein isoform ...
CD46                  0.048   CD46 antigen, complement regulatory protein isoform ...
CD46                  0.048   CD46 antigen, complement regulatory protein isoform ...
CD46                  0.048   CD46 antigen, complement regulatory protein isoform ...
CD46                  0.048   CD46 antigen, complement regulatory protein isoform ...
CCDC80                0.048   steroid-sensitive protein 1 
CCDC80                0.048   steroid-sensitive protein 1 
CD46                  0.047   CD46 antigen, complement regulatory protein isoform ...
CD46                  0.047   CD46 antigen, complement regulatory protein isoform ...
CD46                  0.047   CD46 antigen, complement regulatory protein isoform ...
CD46                  0.047   CD46 antigen, complement regulatory protein isoform ...
CD46                  0.047   CD46 antigen, complement regulatory protein isoform ...
CD46                  0.047   CD46 antigen, complement regulatory protein isoform ...
CD46                  0.047   CD46 antigen, complement regulatory protein isoform ...
CD46                  0.047   CD46 antigen, complement regulatory protein isoform ...
CD46                  0.047   CD46 antigen, complement regulatory protein isoform ...
CR1L                  0.036   complement component (3b/4b) receptor 1-like 
CFB                   0.036   complement factor B preproprotein 
CR1                   0.036   complement receptor 1 isoform S precursor 
CR1                   0.036   complement receptor 1 isoform F precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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