Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 11034847
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|11034847 Ras-related GTP binding D [Homo sapiens]
(400 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|11034847 Ras-related GTP binding D [Homo sapiens] 801 0.0
gi|11995472 Ras-related GTP binding C [Homo sapiens] 600 e-172
gi|46249395 Ras-related GTP binding B short isoform [Homo sapiens] 86 5e-17
gi|46249397 Ras-related GTP binding B long isoform [Homo sapiens] 77 3e-14
gi|5729999 Ras-related GTP binding A [Homo sapiens] 76 5e-14
gi|66879664 ADP-ribosylation factor 1 [Homo sapiens] 39 0.008
gi|66879662 ADP-ribosylation factor 1 [Homo sapiens] 39 0.008
gi|66879660 ADP-ribosylation factor 1 [Homo sapiens] 39 0.008
gi|4502201 ADP-ribosylation factor 1 [Homo sapiens] 39 0.008
gi|4502203 ADP-ribosylation factor 3 [Homo sapiens] 39 0.008
gi|4502211 ADP-ribosylation factor 6 [Homo sapiens] 37 0.032
gi|83716024 kinesin family member 21B [Homo sapiens] 37 0.041
gi|4502205 ADP-ribosylation factor 4 [Homo sapiens] 36 0.054
gi|4502227 ADP-ribosylation factor-like 1 [Homo sapiens] 36 0.070
gi|145580626 E2F transcription factor 7 [Homo sapiens] 36 0.070
gi|4502209 ADP-ribosylation factor 5 [Homo sapiens] 36 0.070
gi|75677335 digestive-organ expansion factor homolog [Homo sapiens] 35 0.092
gi|19923262 RAB5A, member RAS oncogene family [Homo sapiens] 35 0.12
gi|4757774 ADP-ribosylation factor-like 3 [Homo sapiens] 35 0.12
gi|19923979 ADP-ribosylation factor-like 11 [Homo sapiens] 35 0.16
gi|40254947 thioredoxin-related transmembrane protein 4 [Homo sa... 35 0.16
gi|4508005 tripartite motif-containing 26 [Homo sapiens] 35 0.16
gi|100816397 MYST histone acetyltransferase (monocytic leukemia)... 34 0.20
gi|76150625 nucleolar protein 1, 120kDa [Homo sapiens] 33 0.35
gi|76150623 nucleolar protein 1, 120kDa [Homo sapiens] 33 0.35
gi|115529449 upstream binding transcription factor, RNA polymera... 33 0.46
gi|115529451 upstream binding transcription factor, RNA polymera... 33 0.46
gi|7657671 upstream binding transcription factor, RNA polymerase... 33 0.46
gi|4506371 RAB5B, member RAS oncogene family [Homo sapiens] 33 0.46
gi|148762982 hypothetical protein LOC387640 [Homo sapiens] 33 0.46
>gi|11034847 Ras-related GTP binding D [Homo sapiens]
Length = 400
Score = 801 bits (2069), Expect = 0.0
Identities = 400/400 (100%), Positives = 400/400 (100%)
Query: 1 MSQVLGKPQPQDEDDAEEEEEEDELVGLADYGDGPDSSDADPDSGTEEGVLDFSDPFSTE 60
MSQVLGKPQPQDEDDAEEEEEEDELVGLADYGDGPDSSDADPDSGTEEGVLDFSDPFSTE
Sbjct: 1 MSQVLGKPQPQDEDDAEEEEEEDELVGLADYGDGPDSSDADPDSGTEEGVLDFSDPFSTE 60
Query: 61 VKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKICREDVSNSSFVNFQIWDFPG 120
VKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKICREDVSNSSFVNFQIWDFPG
Sbjct: 61 VKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKICREDVSNSSFVNFQIWDFPG 120
Query: 121 QIDFFDPTFDYEMIFRGTGALIFVIDSQDDYMEALARLHLTVTRAYKVNTDINFEVFIHK 180
QIDFFDPTFDYEMIFRGTGALIFVIDSQDDYMEALARLHLTVTRAYKVNTDINFEVFIHK
Sbjct: 121 QIDFFDPTFDYEMIFRGTGALIFVIDSQDDYMEALARLHLTVTRAYKVNTDINFEVFIHK 180
Query: 181 VDGLSDDHKIETQRDIHQRANDDLADAGLEKIHLSFYLTSIYDHSIFEAFSKVVQKLIPQ 240
VDGLSDDHKIETQRDIHQRANDDLADAGLEKIHLSFYLTSIYDHSIFEAFSKVVQKLIPQ
Sbjct: 181 VDGLSDDHKIETQRDIHQRANDDLADAGLEKIHLSFYLTSIYDHSIFEAFSKVVQKLIPQ 240
Query: 241 LPTLENLLNIFISNSGIEKAFLFDVVSKIYIATDSTPVDMQTYELCCDMIDVVIDISCIY 300
LPTLENLLNIFISNSGIEKAFLFDVVSKIYIATDSTPVDMQTYELCCDMIDVVIDISCIY
Sbjct: 241 LPTLENLLNIFISNSGIEKAFLFDVVSKIYIATDSTPVDMQTYELCCDMIDVVIDISCIY 300
Query: 301 GLKEDGAGTPYDKESTAIIKLNNTTVLYLKEVTKFLALVCFVREESFERKGLIDYNFHCF 360
GLKEDGAGTPYDKESTAIIKLNNTTVLYLKEVTKFLALVCFVREESFERKGLIDYNFHCF
Sbjct: 301 GLKEDGAGTPYDKESTAIIKLNNTTVLYLKEVTKFLALVCFVREESFERKGLIDYNFHCF 360
Query: 361 RKAIHEVFEVRMKVVKSRKVQNRLQKKKRATPNGTPRVLL 400
RKAIHEVFEVRMKVVKSRKVQNRLQKKKRATPNGTPRVLL
Sbjct: 361 RKAIHEVFEVRMKVVKSRKVQNRLQKKKRATPNGTPRVLL 400
>gi|11995472 Ras-related GTP binding C [Homo sapiens]
Length = 399
Score = 600 bits (1546), Expect = e-172
Identities = 308/388 (79%), Positives = 329/388 (84%), Gaps = 14/388 (3%)
Query: 10 PQDEDDAEEEEEEDELVGLADYGDGPDSSDADPDSGTEEGVLDFSDPFSTEVKPRILLMG 69
P+D EEEEE+ G G G G D S KPRILLMG
Sbjct: 23 PKDFGYGVEEEEEEAAAAGGGVGAGAGG-------GCGPGGADSS-------KPRILLMG 68
Query: 70 LRRSGKSSIQKVVFHKMSPNETLFLESTNKICREDVSNSSFVNFQIWDFPGQIDFFDPTF 129
LRRSGKSSIQKVVFHKMSPNETLFLESTNKI ++D+SNSSFVNFQIWDFPGQ+DFFDPTF
Sbjct: 69 LRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTF 128
Query: 130 DYEMIFRGTGALIFVIDSQDDYMEALARLHLTVTRAYKVNTDINFEVFIHKVDGLSDDHK 189
DYEMIFRGTGALI+VID+QDDYMEAL RLH+TV++AYKVN D+NFEVFIHKVDGLSDDHK
Sbjct: 129 DYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGLSDDHK 188
Query: 190 IETQRDIHQRANDDLADAGLEKIHLSFYLTSIYDHSIFEAFSKVVQKLIPQLPTLENLLN 249
IETQRDIHQRANDDLADAGLEK+HLSFYLTSIYDHSIFEAFSKVVQKLIPQLPTLENLLN
Sbjct: 189 IETQRDIHQRANDDLADAGLEKLHLSFYLTSIYDHSIFEAFSKVVQKLIPQLPTLENLLN 248
Query: 250 IFISNSGIEKAFLFDVVSKIYIATDSTPVDMQTYELCCDMIDVVIDISCIYGLKEDGAGT 309
IFISNSGIEKAFLFDVVSKIYIATDS+PVDMQ+YELCCDMIDVVID+SCIYGLKEDG+G+
Sbjct: 249 IFISNSGIEKAFLFDVVSKIYIATDSSPVDMQSYELCCDMIDVVIDVSCIYGLKEDGSGS 308
Query: 310 PYDKESTAIIKLNNTTVLYLKEVTKFLALVCFVREESFERKGLIDYNFHCFRKAIHEVFE 369
YDKES AIIKLNNTTVLYLKEVTKFLALVC +REESFERKGLIDYNFHCFRKAIHEVFE
Sbjct: 309 AYDKESMAIIKLNNTTVLYLKEVTKFLALVCILREESFERKGLIDYNFHCFRKAIHEVFE 368
Query: 370 VRMKVVKSRKVQNRLQKKKRATPNGTPR 397
V + +S Q K T NGTPR
Sbjct: 369 VGVTSHRSCGHQTSASSLKALTHNGTPR 396
>gi|46249395 Ras-related GTP binding B short isoform [Homo sapiens]
Length = 346
Score = 86.3 bits (212), Expect = 5e-17
Identities = 71/264 (26%), Positives = 124/264 (46%), Gaps = 20/264 (7%)
Query: 12 DEDDAEEEEEEDELVGLADYGDGPDSSDADPDSGTEEGVLDFSDPFSTEVKPRILLMGLR 71
+E D+E+ E++ L GP DP G EG L + P +T +K ++LLMG
Sbjct: 2 EESDSEKTTEKENL--------GPRM---DPPLGEPEGSLGWVLP-NTAMKKKVLLMGKS 49
Query: 72 RSGKSSIQKVVFHKMSPNETLFLESTNKICREDVSNSSFVNFQIWDFPGQIDFFDPTF-- 129
SGK+S++ ++F +T L +T + V + +WD GQ F + F
Sbjct: 50 GSGKTSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQDTFMENYFTS 109
Query: 130 DYEMIFRGTGALIFVIDSQDDYMEALARLHLTVTRAYKVNT-DINFEVFIHKVDGLSDDH 188
+ IFR LI+V D + +E + + A N+ D +HK+D + +D
Sbjct: 110 QRDNIFRNVEVLIYVFDVESRELEKDMHYYQSCLEAILQNSPDAKIFCLVHKMDLVQED- 168
Query: 189 KIETQRDIHQRANDDLADAGLEKIHLSFYLTSIYDHSIFEAFSKVVQKLIPQLPTLENLL 248
QRD+ + ++ + S + TSI+D ++++A+S +V +LIP + LE L
Sbjct: 169 ----QRDLIFKEREEDLRRLSRPLECSCFRTSIWDETLYKAWSSIVYQLIPNVQQLEMNL 224
Query: 249 NIFISNSGIEKAFLFDVVSKIYIA 272
F ++ LF+ + + I+
Sbjct: 225 RNFAEIIEADEVLLFERATFLVIS 248
>gi|46249397 Ras-related GTP binding B long isoform [Homo sapiens]
Length = 374
Score = 77.0 bits (188), Expect = 3e-14
Identities = 74/292 (25%), Positives = 129/292 (44%), Gaps = 48/292 (16%)
Query: 12 DEDDAEEEEEEDELVGLADYGDGPDSSDADPDSGTEEGVLDFSDPFSTEVKPRILLMGLR 71
+E D+E+ E++ L GP DP G EG L + P +T +K ++LLMG
Sbjct: 2 EESDSEKTTEKENL--------GPRM---DPPLGEPEGSLGWVLP-NTAMKKKVLLMGKS 49
Query: 72 RSGKSSIQKVVF-------------------HKMSPNETL----FLESTNKICREDVSNS 108
SGK+S++ ++F H + N +L ++S DV +S
Sbjct: 50 GSGKTSMRSIIFANYIARDTRRLGATILDRIHSLQINSSLSTYSLVDSVGNTKTFDVEHS 109
Query: 109 SF-----VNFQIWDFPGQIDFFDPTFDYEM--IFRGTGALIFVIDSQDDYMEALARLHLT 161
+ +WD GQ F + F + IFR LI+V D + +E + +
Sbjct: 110 HVRFLGNLVLNLWDCGGQDTFMENYFTSQRDNIFRNVEVLIYVFDVESRELEKDMHYYQS 169
Query: 162 VTRAYKVNT-DINFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKIHLSFYLTS 220
A N+ D +HK+D + +D QRD+ + ++ + S + TS
Sbjct: 170 CLEAILQNSPDAKIFCLVHKMDLVQED-----QRDLIFKEREEDLRRLSRPLECSCFRTS 224
Query: 221 IYDHSIFEAFSKVVQKLIPQLPTLENLLNIFISNSGIEKAFLFDVVSKIYIA 272
I+D ++++A+S +V +LIP + LE L F ++ LF+ + + I+
Sbjct: 225 IWDETLYKAWSSIVYQLIPNVQQLEMNLRNFAEIIEADEVLLFERATFLVIS 276
>gi|5729999 Ras-related GTP binding A [Homo sapiens]
Length = 313
Score = 76.3 bits (186), Expect = 5e-14
Identities = 56/218 (25%), Positives = 104/218 (47%), Gaps = 8/218 (3%)
Query: 58 STEVKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKICREDVSNSSFVNFQIWD 117
+T +K ++LLMG SGK+S++ ++F +T L +T + V + +WD
Sbjct: 3 NTAMKKKVLLMGKSGSGKTSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGNLVLNLWD 62
Query: 118 FPGQIDFFDPTF--DYEMIFRGTGALIFVIDSQDDYMEALARLHLTVTRAYKVNT-DINF 174
GQ F + F + IFR LI+V D + +E + + A N+ D
Sbjct: 63 CGGQDTFMENYFTSQRDNIFRNVEVLIYVFDVESRELEKDMHYYQSCLEAILQNSPDAKI 122
Query: 175 EVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKIHLSFYLTSIYDHSIFEAFSKVV 234
+HK+D + +D QRD+ + ++ + + + TSI+D ++++A+S +V
Sbjct: 123 FCLVHKMDLVQED-----QRDLIFKEREEDLRRLSRPLECACFRTSIWDETLYKAWSSIV 177
Query: 235 QKLIPQLPTLENLLNIFISNSGIEKAFLFDVVSKIYIA 272
+LIP + LE L F ++ LF+ + + I+
Sbjct: 178 YQLIPNVQQLEMNLRNFAQIIEADEVLLFERATFLVIS 215
>gi|66879664 ADP-ribosylation factor 1 [Homo sapiens]
Length = 181
Score = 38.9 bits (89), Expect = 0.008
Identities = 38/119 (31%), Positives = 55/119 (46%), Gaps = 8/119 (6%)
Query: 64 RILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKICREDVSNSSFVNFQIWDFPGQID 123
RIL++GL +GK++I +K+ E + T E V + ++F +WD GQ D
Sbjct: 19 RILMVGLDAAGKTTI----LYKLKLGEIVTTIPTIGFNVETVEYKN-ISFTVWDVGGQ-D 72
Query: 124 FFDPTFDYEMIFRGTGALIFVIDSQDDYMEALARLHLTVTRAYKVNTDINFEVFIHKVD 182
P + + F+ T LIFV+DS D AR L A D VF +K D
Sbjct: 73 KIRPLWRH--YFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQD 129
>gi|66879662 ADP-ribosylation factor 1 [Homo sapiens]
Length = 181
Score = 38.9 bits (89), Expect = 0.008
Identities = 38/119 (31%), Positives = 55/119 (46%), Gaps = 8/119 (6%)
Query: 64 RILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKICREDVSNSSFVNFQIWDFPGQID 123
RIL++GL +GK++I +K+ E + T E V + ++F +WD GQ D
Sbjct: 19 RILMVGLDAAGKTTI----LYKLKLGEIVTTIPTIGFNVETVEYKN-ISFTVWDVGGQ-D 72
Query: 124 FFDPTFDYEMIFRGTGALIFVIDSQDDYMEALARLHLTVTRAYKVNTDINFEVFIHKVD 182
P + + F+ T LIFV+DS D AR L A D VF +K D
Sbjct: 73 KIRPLWRH--YFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQD 129
>gi|66879660 ADP-ribosylation factor 1 [Homo sapiens]
Length = 181
Score = 38.9 bits (89), Expect = 0.008
Identities = 38/119 (31%), Positives = 55/119 (46%), Gaps = 8/119 (6%)
Query: 64 RILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKICREDVSNSSFVNFQIWDFPGQID 123
RIL++GL +GK++I +K+ E + T E V + ++F +WD GQ D
Sbjct: 19 RILMVGLDAAGKTTI----LYKLKLGEIVTTIPTIGFNVETVEYKN-ISFTVWDVGGQ-D 72
Query: 124 FFDPTFDYEMIFRGTGALIFVIDSQDDYMEALARLHLTVTRAYKVNTDINFEVFIHKVD 182
P + + F+ T LIFV+DS D AR L A D VF +K D
Sbjct: 73 KIRPLWRH--YFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQD 129
>gi|4502201 ADP-ribosylation factor 1 [Homo sapiens]
Length = 181
Score = 38.9 bits (89), Expect = 0.008
Identities = 38/119 (31%), Positives = 55/119 (46%), Gaps = 8/119 (6%)
Query: 64 RILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKICREDVSNSSFVNFQIWDFPGQID 123
RIL++GL +GK++I +K+ E + T E V + ++F +WD GQ D
Sbjct: 19 RILMVGLDAAGKTTI----LYKLKLGEIVTTIPTIGFNVETVEYKN-ISFTVWDVGGQ-D 72
Query: 124 FFDPTFDYEMIFRGTGALIFVIDSQDDYMEALARLHLTVTRAYKVNTDINFEVFIHKVD 182
P + + F+ T LIFV+DS D AR L A D VF +K D
Sbjct: 73 KIRPLWRH--YFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQD 129
>gi|4502203 ADP-ribosylation factor 3 [Homo sapiens]
Length = 181
Score = 38.9 bits (89), Expect = 0.008
Identities = 38/119 (31%), Positives = 55/119 (46%), Gaps = 8/119 (6%)
Query: 64 RILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKICREDVSNSSFVNFQIWDFPGQID 123
RIL++GL +GK++I +K+ E + T E V + ++F +WD GQ D
Sbjct: 19 RILMVGLDAAGKTTI----LYKLKLGEIVTTIPTIGFNVETVEYKN-ISFTVWDVGGQ-D 72
Query: 124 FFDPTFDYEMIFRGTGALIFVIDSQDDYMEALARLHLTVTRAYKVNTDINFEVFIHKVD 182
P + + F+ T LIFV+DS D AR L A D VF +K D
Sbjct: 73 KIRPLWRH--YFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQD 129
>gi|4502211 ADP-ribosylation factor 6 [Homo sapiens]
Length = 175
Score = 37.0 bits (84), Expect = 0.032
Identities = 32/98 (32%), Positives = 50/98 (51%), Gaps = 10/98 (10%)
Query: 64 RILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKICREDVSNSSFVNFQIWDFPGQID 123
RIL++GL +GK++I +K+ +++ T E V+ + V F +WD GQ D
Sbjct: 15 RILMLGLDAAGKTTI----LYKLKLGQSVTTIPTVGFNVETVTYKN-VKFNVWDVGGQ-D 68
Query: 124 FFDPTFDYEMIFRGTGALIFVID--SQDDYMEALARLH 159
P + + + GT LIFV+D +D EA LH
Sbjct: 69 KIRPLWRH--YYTGTQGLIFVVDCADRDRIDEARQELH 104
>gi|83716024 kinesin family member 21B [Homo sapiens]
Length = 1624
Score = 36.6 bits (83), Expect = 0.041
Identities = 23/51 (45%), Positives = 30/51 (58%), Gaps = 4/51 (7%)
Query: 12 DEDDAEEEEEEDELVGLADYGDGPDSSDADPDSGTEEGVLDF-SDPFSTEV 61
DE++AEEEEEE + G + D D DSG+EE ++D SDP EV
Sbjct: 583 DENEAEEEEEERDESGCE---EEEGREDEDEDSGSEESLVDSDSDPEEKEV 630
>gi|4502205 ADP-ribosylation factor 4 [Homo sapiens]
Length = 180
Score = 36.2 bits (82), Expect = 0.054
Identities = 29/86 (33%), Positives = 44/86 (51%), Gaps = 8/86 (9%)
Query: 64 RILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKICREDVSNSSFVNFQIWDFPGQID 123
RIL++GL +GK++I +K+ E + T E V + + F +WD GQ D
Sbjct: 19 RILMVGLDAAGKTTI----LYKLKLGEIVTTIPTIGFNVETVEYKN-ICFTVWDVGGQ-D 72
Query: 124 FFDPTFDYEMIFRGTGALIFVIDSQD 149
P + + F+ T LIFV+DS D
Sbjct: 73 RIRPLWKH--YFQNTQGLIFVVDSND 96
>gi|4502227 ADP-ribosylation factor-like 1 [Homo sapiens]
Length = 181
Score = 35.8 bits (81), Expect = 0.070
Identities = 29/97 (29%), Positives = 48/97 (49%), Gaps = 9/97 (9%)
Query: 53 FSDPFSTEVKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKICREDVSNSSFVN 112
FS F T + RIL++GL +GK++I +++ E + T E V+ + +
Sbjct: 9 FSSLFGTR-EMRILILGLDGAGKTTI----LYRLQVGEVVTTIPTIGFNVETVTYKN-LK 62
Query: 113 FQIWDFPGQIDFFDPTFDYEMIFRGTGALIFVIDSQD 149
FQ+WD GQ + + T A+I+V+DS D
Sbjct: 63 FQVWDLGGQTSIRP---YWRCYYSNTDAVIYVVDSCD 96
>gi|145580626 E2F transcription factor 7 [Homo sapiens]
Length = 911
Score = 35.8 bits (81), Expect = 0.070
Identities = 22/54 (40%), Positives = 32/54 (59%), Gaps = 4/54 (7%)
Query: 3 QVLGKPQPQDEDDAEEEEEEDELVGLADYGDGPDSSDADPDSGTEEGVLDFSDP 56
Q LG+ Q +E A +++E +L+ DY G D DPDS E+ +LDFS+P
Sbjct: 223 QRLGEEQKYEEQMAYLQQKELDLI---DYKFGERKKDGDPDS-QEQQLLDFSEP 272
>gi|4502209 ADP-ribosylation factor 5 [Homo sapiens]
Length = 180
Score = 35.8 bits (81), Expect = 0.070
Identities = 29/86 (33%), Positives = 44/86 (51%), Gaps = 8/86 (9%)
Query: 64 RILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKICREDVSNSSFVNFQIWDFPGQID 123
RIL++GL +GK++I +K+ E + T E V + + F +WD GQ D
Sbjct: 19 RILMVGLDAAGKTTI----LYKLKLGEIVTTIPTIGFNVETVEYKN-ICFTVWDVGGQ-D 72
Query: 124 FFDPTFDYEMIFRGTGALIFVIDSQD 149
P + + F+ T LIFV+DS D
Sbjct: 73 KIRPLWRH--YFQNTQGLIFVVDSND 96
>gi|75677335 digestive-organ expansion factor homolog [Homo sapiens]
Length = 756
Score = 35.4 bits (80), Expect = 0.092
Identities = 28/99 (28%), Positives = 41/99 (41%), Gaps = 1/99 (1%)
Query: 11 QDEDDAEEEEEEDELVGLADYGDGPDSSDADPDSGTEEGVLDFSDPFSTEVKPRILLMGL 70
++E+D EEEEEED +V A+ D SD + + + + P G
Sbjct: 85 EEEEDEEEEEEEDSIVDDAEMNDEDGGSDVSVEEEMAAESTESPENVALSADPEGKEDGE 144
Query: 71 RRSGKSSIQKVVFHKMSPNETLFLESTNKICREDVSNSS 109
G S F + +E+LF TN + E NSS
Sbjct: 145 EPPGTSQTSPEEFTD-AKHESLFSLETNFLEEESGDNSS 182
>gi|19923262 RAB5A, member RAS oncogene family [Homo sapiens]
Length = 215
Score = 35.0 bits (79), Expect = 0.12
Identities = 46/184 (25%), Positives = 76/184 (41%), Gaps = 21/184 (11%)
Query: 64 RILLMGLRRSGKSSIQ----KVVFHKMSPNETLFLESTNKICREDVSNSSFVNFQIWDFP 119
+++L+G GKSS+ K FH+ + T +C +D + V F+IWD
Sbjct: 22 KLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTT----VKFEIWDTA 77
Query: 120 GQIDFFDPTFDYEMIFRGTGALIFVIDSQDDYMEALARLHLTVTRAYK-VNTDINFEVFI 178
GQ + M +RG A I V D ++ E+ AR V + + +I +
Sbjct: 78 GQERYHSLA---PMYYRGAQAAIVVYDITNE--ESFARAKNWVKELQRQASPNIVIALSG 132
Query: 179 HKVDGLSDDHKIETQRDIHQRANDDLADAGLEKIHLSFYLTSIYDHSIFEAFSKVVQKLI 238
+K D + +R + + AD + TS+ + IF A +K + K
Sbjct: 133 NKAD-------LANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKNE 185
Query: 239 PQLP 242
PQ P
Sbjct: 186 PQNP 189
>gi|4757774 ADP-ribosylation factor-like 3 [Homo sapiens]
Length = 182
Score = 35.0 bits (79), Expect = 0.12
Identities = 26/86 (30%), Positives = 41/86 (47%), Gaps = 8/86 (9%)
Query: 64 RILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKICREDVSNSSFVNFQIWDFPGQID 123
RILL+GL +GK+++ K +++ + + T + V + F +WD GQ
Sbjct: 19 RILLLGLDNAGKTTLLK----QLASEDISHITPTQGFNIKSVQSQGF-KLNVWDIGGQRK 73
Query: 124 FFDPTFDYEMIFRGTGALIFVIDSQD 149
+Y F T LI+VIDS D
Sbjct: 74 IRPYWKNY---FENTDILIYVIDSAD 96
>gi|19923979 ADP-ribosylation factor-like 11 [Homo sapiens]
Length = 196
Score = 34.7 bits (78), Expect = 0.16
Identities = 28/114 (24%), Positives = 52/114 (45%), Gaps = 12/114 (10%)
Query: 60 EVKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKICREDVSNSSFVNFQIWDFP 119
+ + ++++MGL +GK+++ +K+ ++ + T E + V+ +WD
Sbjct: 10 KAEAQVVMMGLDSAGKTTL----LYKLKGHQLVETLPTVGFNVEPLKAPGHVSLTLWDVG 65
Query: 120 GQIDFFDPTFDYEMIFRGTGALIFVIDSQDDYMEALARLHLTVTRAYKVNTDIN 173
GQ DY GT L++V+DS D+ ARL + +V D N
Sbjct: 66 GQAPLRASWKDY---LEGTDILVYVLDSTDE-----ARLPESAAELTEVLNDPN 111
>gi|40254947 thioredoxin-related transmembrane protein 4 [Homo
sapiens]
Length = 349
Score = 34.7 bits (78), Expect = 0.16
Identities = 23/62 (37%), Positives = 29/62 (46%), Gaps = 13/62 (20%)
Query: 12 DEDDAEEEEEEDELVGLADY------------GDGPDSSDADPDSGTEEGVLDFSDPFST 59
DED+AEEEEEED L D DG + +P+ EEG+ + P T
Sbjct: 272 DEDEAEEEEEEDNLAAGVDEERSEANDQGPPGEDGVTREEVEPEE-AEEGISEQPCPADT 330
Query: 60 EV 61
EV
Sbjct: 331 EV 332
>gi|4508005 tripartite motif-containing 26 [Homo sapiens]
Length = 539
Score = 34.7 bits (78), Expect = 0.16
Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Query: 6 GKPQPQDEDDAEEEEEEDELVGLADYGDGPDSSDADPDS---GTEE 48
G + ++E D EEE EE+E A YGDG D + D D G EE
Sbjct: 378 GWSEDEEEGDEEEEGEEEEEEEEAGYGDGYDDWETDEDEESLGDEE 423
>gi|100816397 MYST histone acetyltransferase (monocytic leukemia) 4
[Homo sapiens]
Length = 2073
Score = 34.3 bits (77), Expect = 0.20
Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
Query: 7 KPQPQDEDDAEEEEEEDELVGLADYGDGPDSSDADPDSGTEE 48
KP+ ++E++ EEEEEE+E G + G G + + DPD +
Sbjct: 1349 KPEEEEEEEEEEEEEEEEEEGEEEEGGG--NVEKDPDGAKSQ 1388
>gi|76150625 nucleolar protein 1, 120kDa [Homo sapiens]
Length = 808
Score = 33.5 bits (75), Expect = 0.35
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Query: 6 GKPQPQDEDDAEEEEEEDELVGLADYGD---GPDSSDADPDSGTEEGVLD 52
GK +P D EEEEE+ E G+ ++GD D +D D G + D
Sbjct: 99 GKKRPAPGSDEEEEEEDSEEDGMVNHGDLWGSEDDADTVDDYGADSNSED 148
>gi|76150623 nucleolar protein 1, 120kDa [Homo sapiens]
Length = 808
Score = 33.5 bits (75), Expect = 0.35
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Query: 6 GKPQPQDEDDAEEEEEEDELVGLADYGD---GPDSSDADPDSGTEEGVLD 52
GK +P D EEEEE+ E G+ ++GD D +D D G + D
Sbjct: 99 GKKRPAPGSDEEEEEEDSEEDGMVNHGDLWGSEDDADTVDDYGADSNSED 148
>gi|115529449 upstream binding transcription factor, RNA polymerase
I isoform b [Homo sapiens]
Length = 727
Score = 33.1 bits (74), Expect = 0.46
Identities = 15/41 (36%), Positives = 28/41 (68%), Gaps = 2/41 (4%)
Query: 9 QPQDEDDAEEEEEEDELVGLADYGDGPDSSDADPDSGTEEG 49
+ +D++D +EEEE+DE ++ DG DSS++ + +E+G
Sbjct: 646 EDEDDEDEDEEEEDDENGDSSE--DGGDSSESSSEDESEDG 684
Score = 31.2 bits (69), Expect = 1.7
Identities = 16/44 (36%), Positives = 22/44 (50%)
Query: 12 DEDDAEEEEEEDELVGLADYGDGPDSSDADPDSGTEEGVLDFSD 55
DED+ EEEE+++ D GD +SS D +E D D
Sbjct: 650 DEDEDEEEEDDENGDSSEDGGDSSESSSEDESEDGDENEEDDED 693
>gi|115529451 upstream binding transcription factor, RNA polymerase
I isoform b [Homo sapiens]
Length = 727
Score = 33.1 bits (74), Expect = 0.46
Identities = 15/41 (36%), Positives = 28/41 (68%), Gaps = 2/41 (4%)
Query: 9 QPQDEDDAEEEEEEDELVGLADYGDGPDSSDADPDSGTEEG 49
+ +D++D +EEEE+DE ++ DG DSS++ + +E+G
Sbjct: 646 EDEDDEDEDEEEEDDENGDSSE--DGGDSSESSSEDESEDG 684
Score = 31.2 bits (69), Expect = 1.7
Identities = 16/44 (36%), Positives = 22/44 (50%)
Query: 12 DEDDAEEEEEEDELVGLADYGDGPDSSDADPDSGTEEGVLDFSD 55
DED+ EEEE+++ D GD +SS D +E D D
Sbjct: 650 DEDEDEEEEDDENGDSSEDGGDSSESSSEDESEDGDENEEDDED 693
>gi|7657671 upstream binding transcription factor, RNA polymerase I
isoform a [Homo sapiens]
Length = 764
Score = 33.1 bits (74), Expect = 0.46
Identities = 15/41 (36%), Positives = 28/41 (68%), Gaps = 2/41 (4%)
Query: 9 QPQDEDDAEEEEEEDELVGLADYGDGPDSSDADPDSGTEEG 49
+ +D++D +EEEE+DE ++ DG DSS++ + +E+G
Sbjct: 683 EDEDDEDEDEEEEDDENGDSSE--DGGDSSESSSEDESEDG 721
Score = 31.2 bits (69), Expect = 1.7
Identities = 16/44 (36%), Positives = 22/44 (50%)
Query: 12 DEDDAEEEEEEDELVGLADYGDGPDSSDADPDSGTEEGVLDFSD 55
DED+ EEEE+++ D GD +SS D +E D D
Sbjct: 687 DEDEDEEEEDDENGDSSEDGGDSSESSSEDESEDGDENEEDDED 730
>gi|4506371 RAB5B, member RAS oncogene family [Homo sapiens]
Length = 215
Score = 33.1 bits (74), Expect = 0.46
Identities = 26/87 (29%), Positives = 39/87 (44%), Gaps = 11/87 (12%)
Query: 64 RILLMGLRRSGKSSIQ----KVVFHKMSPNETLFLESTNKICREDVSNSSFVNFQIWDFP 119
+++L+G GKSS+ K FH+ + T +C +D + V F+IWD
Sbjct: 22 KLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTT----VKFEIWDTA 77
Query: 120 GQIDFFDPTFDYEMIFRGTGALIFVID 146
GQ + M +RG A I V D
Sbjct: 78 GQERYHSLA---PMYYRGAQAAIVVYD 101
>gi|148762982 hypothetical protein LOC387640 [Homo sapiens]
Length = 908
Score = 33.1 bits (74), Expect = 0.46
Identities = 15/37 (40%), Positives = 23/37 (62%)
Query: 11 QDEDDAEEEEEEDELVGLADYGDGPDSSDADPDSGTE 47
++E++ EEEEEE+E G + D + S + DS TE
Sbjct: 413 EEEEEGEEEEEEEEEEGGSGASDSSEVSSEEEDSSTE 449
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.138 0.396
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,982,519
Number of Sequences: 37866
Number of extensions: 674231
Number of successful extensions: 6810
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 66
Number of HSP's that attempted gapping in prelim test: 5928
Number of HSP's gapped (non-prelim): 643
length of query: 400
length of database: 18,247,518
effective HSP length: 104
effective length of query: 296
effective length of database: 14,309,454
effective search space: 4235598384
effective search space used: 4235598384
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.