Guide to the Human Genome
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Name: ARL1 Sequence: fasta or formatted (181aa) NCBI GI: 4502227
Description:

ADP-ribosylation factor-like 1

Referenced in:

ADP-Ribosylation Factors
Coiled-Coil Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.5         10           1
 C cysteine            1.1          2           1
 D aspartate           5.0          9           1
 E glutamate           7.2         13           4
 F phenylalanine       4.4          8           2
 G glycine             7.7         14           2
 H histidine           0.0          0           0
 I isoleucine          6.6         12           1
 K lysine              6.1         11           1
 L leucine             9.9         18           1
 M methionine          3.9          7           1
 N asparagine          2.8          5           1
 P proline             1.7          3           1
 Q glutamine           3.9          7           1
 R arginine            5.5         10           1
 S serine              7.7         14           2
 T threonine           8.3         15           2
 V valine              7.2         13           2
 W tryptophan          2.2          4           1
 Y tyrosine            3.3          6           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ADP-ribosylation factor-like 1 
ARF1                  0.585   ADP-ribosylation factor 1 
ARF1                  0.585   ADP-ribosylation factor 1 
ARF1                  0.585   ADP-ribosylation factor 1 
ARF1                  0.585   ADP-ribosylation factor 1 
ARF3                  0.582   ADP-ribosylation factor 3 
ARF5                  0.570   ADP-ribosylation factor 5 
ARF4                  0.561   ADP-ribosylation factor 4 
ARF6                  0.537   ADP-ribosylation factor 6 
ARL5A                 0.457   ADP-ribosylation factor-like 5A isoform 1 
ARL5B                 0.454   ADP-ribosylation factor-like 8 
TRIM23                0.433   ADP-ribosylation factor domain protein 1 isoform alph...
ARL3                  0.400   ADP-ribosylation factor-like 3 
TRIM23                0.394   ADP-ribosylation factor domain protein 1 isoform bet...
TRIM23                0.388   ADP-ribosylation factor domain protein 1 isoform gam...
ARL2                  0.376   ADP-ribosylation factor-like 2 
ARL5A                 0.358   ADP-ribosylation factor-like 5A isoform 2 
ARL5A                 0.358   ADP-ribosylation factor-like 5A isoform 2 
ARL14                 0.340   ADP-ribosylation factor-like 14 
ARL5C                 0.331   ADP-ribosylation factor-like 5C 
ARL4C                 0.307   ADP-ribosylation factor-like 4C 
ARL4A                 0.304   ADP-ribosylation factor-like 4A 
ARL4A                 0.304   ADP-ribosylation factor-like 4A 
ARL4A                 0.304   ADP-ribosylation factor-like 4A 
ARL11                 0.301   ADP-ribosylation factor-like 11 
ARL6                  0.296   ADP-ribosylation factor-like 6 
ARL6                  0.296   ADP-ribosylation factor-like 6 
ARL8B                 0.287   ADP-ribosylation factor-like 10C 
ARL8A                 0.281   ADP-ribosylation factor-like 8A 
ARL4D                 0.266   ADP-ribosylation factor-like 4D 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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