Guide to the Human Genome
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Name: ARF6 Sequence: fasta or formatted (175aa) NCBI GI: 4502211
Description:

ADP-ribosylation factor 6

Referenced in:

ADP-Ribosylation Factors

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.6          8           2
 C cysteine            1.1          2           1
 D aspartate           7.4         13           1
 E glutamate           4.6          8           1
 F phenylalanine       2.9          5           1
 G glycine             8.0         14           2
 H histidine           1.7          3           1
 I isoleucine          8.0         14           2
 K lysine              7.4         13           1
 L leucine             9.7         17           1
 M methionine          2.9          5           1
 N asparagine          4.6          8           1
 P proline             2.9          5           1
 Q glutamine           4.0          7           1
 R arginine            6.9         12           1
 S serine              3.4          6           1
 T threonine           7.4         13           2
 V valine              6.3         11           2
 W tryptophan          2.3          4           1
 Y tyrosine            4.0          7           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ADP-ribosylation factor 6 
ARF3                  0.707   ADP-ribosylation factor 3 
ARF1                  0.699   ADP-ribosylation factor 1 
ARF1                  0.699   ADP-ribosylation factor 1 
ARF1                  0.699   ADP-ribosylation factor 1 
ARF1                  0.699   ADP-ribosylation factor 1 
ARF5                  0.663   ADP-ribosylation factor 5 
ARF4                  0.648   ADP-ribosylation factor 4 
ARL1                  0.537   ADP-ribosylation factor-like 1 
TRIM23                0.504   ADP-ribosylation factor domain protein 1 isoform alph...
TRIM23                0.448   ADP-ribosylation factor domain protein 1 isoform bet...
TRIM23                0.427   ADP-ribosylation factor domain protein 1 isoform gam...
ARL5A                 0.427   ADP-ribosylation factor-like 5A isoform 1 
ARL14                 0.424   ADP-ribosylation factor-like 14 
ARL5B                 0.421   ADP-ribosylation factor-like 8 
ARL4C                 0.406   ADP-ribosylation factor-like 4C 
ARL2                  0.400   ADP-ribosylation factor-like 2 
ARL3                  0.382   ADP-ribosylation factor-like 3 
ARL4A                 0.382   ADP-ribosylation factor-like 4A 
ARL4A                 0.382   ADP-ribosylation factor-like 4A 
ARL4A                 0.382   ADP-ribosylation factor-like 4A 
ARL5C                 0.355   ADP-ribosylation factor-like 5C 
ARL11                 0.346   ADP-ribosylation factor-like 11 
ARL5A                 0.337   ADP-ribosylation factor-like 5A isoform 2 
ARL5A                 0.337   ADP-ribosylation factor-like 5A isoform 2 
ARL4D                 0.334   ADP-ribosylation factor-like 4D 
ARL6                  0.325   ADP-ribosylation factor-like 6 
ARL6                  0.325   ADP-ribosylation factor-like 6 
ARL8B                 0.304   ADP-ribosylation factor-like 10C 
ARL8A                 0.293   ADP-ribosylation factor-like 8A 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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