RRAGD 614

Name: RRAGD	Sequence: fasta or formatted (400aa)		NCBI GI: 11034847
Description: Ras-related GTP binding D		Referenced in: Ran and Rag
Composition: Amino acid Percentage Count Longest homopolymer A alanine 4.5 18 1 C cysteine 1.5 6 2 D aspartate 9.5 38 2 E glutamate 7.8 31 6 F phenylalanine 6.5 26 2 G glycine 4.8 19 1 H histidine 2.2 9 1 I isoleucine 7.2 29 2 K lysine 6.8 27 3 L leucine 8.8 35 2 M methionine 2.0 8 1 N asparagine 3.8 15 2 P proline 3.8 15 1 Q glutamine 3.5 14 1 R arginine 4.2 17 2 S serine 7.0 28 2 T threonine 5.5 22 2 V valine 7.5 30 2 W tryptophan 0.2 1 1 Y tyrosine 3.0 12 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 Ras-related GTP binding D RRAGC 0.741 Ras-related GTP binding C RRAGB 0.079 Ras-related GTP binding B short isoform RRAGB 0.067 Ras-related GTP binding B long isoform RRAGA 0.066 Ras-related GTP binding A ARF1 0.018 ADP-ribosylation factor 1 ARF1 0.018 ADP-ribosylation factor 1 ARF1 0.018 ADP-ribosylation factor 1 ARF1 0.018 ADP-ribosylation factor 1 ARF3 0.018 ADP-ribosylation factor 3 ARF6 0.015 ADP-ribosylation factor 6 KIF21B 0.015 kinesin family member 21B ARF4 0.014 ADP-ribosylation factor 4 ARL1 0.014 ADP-ribosylation factor-like 1 E2F7 0.014 E2F transcription factor 7 ARF5 0.014 ADP-ribosylation factor 5 C1orf107 0.013 digestive-organ expansion factor homolog RAB5A 0.013 RAB5A, member RAS oncogene family ARL3 0.013 ADP-ribosylation factor-like 3 ARL11 0.013 ADP-ribosylation factor-like 11 TMX4 0.013 thioredoxin-related transmembrane protein 4 TRIM26 0.013 tripartite motif-containing 26 MYST4 0.012 MYST histone acetyltransferase (monocytic leukemia)... NOP2 0.010 nucleolar protein 1, 120kDa NOP2 0.010 nucleolar protein 1, 120kDa UBTF 0.010 upstream binding transcription factor, RNA polymera... UBTF 0.010 upstream binding transcription factor, RNA polymera... UBTF 0.010 upstream binding transcription factor, RNA polymerase... RAB5B 0.010 RAB5B, member RAS oncogene family C10orf140 0.010 hypothetical protein LOC387640 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.