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Search of human proteins with 156142186
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|156142186 cytokine receptor-like factor 3 [Homo sapiens]
(442 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|156142186 cytokine receptor-like factor 3 [Homo sapiens] 898 0.0
gi|55749708 outer dense fiber of sperm tails 2-like isoform b [H... 40 0.003
gi|55749696 outer dense fiber of sperm tails 2-like isoform a [H... 40 0.003
gi|24430212 interleukin 23 receptor precursor [Homo sapiens] 37 0.036
gi|154350244 hypothetical protein LOC79632 isoform 2 [Homo sapiens] 37 0.036
gi|154350226 hypothetical protein LOC79632 isoform 1 [Homo sapiens] 37 0.036
gi|205360934 fibronectin type III domain containing 3B [Homo sap... 35 0.10
gi|205360932 fibronectin type III domain containing 3B [Homo sap... 35 0.10
gi|6715600 golgi autoantigen, golgin subfamily a, 4 [Homo sapiens] 35 0.10
gi|19924163 muscle specific ring finger protein 1 [Homo sapiens] 35 0.14
gi|198442834 coiled-coil domain containing 152 [Homo sapiens] 34 0.23
gi|83281200 protogenin [Homo sapiens] 33 0.40
gi|93204881 Rab interacting lysosomal protein [Homo sapiens] 33 0.40
gi|75677574 cell cycle progression 1 isoform 2 [Homo sapiens] 33 0.40
gi|75677585 cell cycle progression 1 isoform 1 [Homo sapiens] 33 0.40
gi|71061468 centromere protein E [Homo sapiens] 33 0.52
gi|148839466 kalirin, RhoGEF kinase isoform 1 [Homo sapiens] 33 0.68
gi|68362740 kalirin, RhoGEF kinase isoform 3 [Homo sapiens] 33 0.68
gi|28610149 interleukin 6 signal transducer isoform 2 precursor ... 33 0.68
gi|28610147 interleukin 6 signal transducer isoform 1 precursor ... 33 0.68
gi|21735548 centrosomal protein 2 [Homo sapiens] 33 0.68
gi|74229017 2'-5'-oligoadenylate synthetase 2 isoform 2 [Homo sa... 33 0.68
gi|74229021 2'-5'-oligoadenylate synthetase 2 isoform 3 [Homo sa... 33 0.68
gi|74229019 2'-5'-oligoadenylate synthetase 2 isoform 1 [Homo sa... 33 0.68
gi|47174859 tripartite motif-containing 46 [Homo sapiens] 33 0.68
gi|19920317 cytoskeleton-associated protein 4 [Homo sapiens] 32 0.88
gi|118918395 fibronectin type III domain containing 3A isoform 1... 32 0.88
gi|118918397 fibronectin type III domain containing 3A isoform 2... 32 0.88
gi|30089940 Golgi autoantigen, golgin subfamily a, 3 [Homo sapiens] 32 0.88
gi|4505501 oxidized low density lipoprotein (lectin-like) recept... 32 1.5
>gi|156142186 cytokine receptor-like factor 3 [Homo sapiens]
Length = 442
Score = 898 bits (2320), Expect = 0.0
Identities = 442/442 (100%), Positives = 442/442 (100%)
Query: 1 MRGAMELEPELLLQEARENVEAAQSYRRELGHRLEGLREARRQIKESASQTRDVLKQHFN 60
MRGAMELEPELLLQEARENVEAAQSYRRELGHRLEGLREARRQIKESASQTRDVLKQHFN
Sbjct: 1 MRGAMELEPELLLQEARENVEAAQSYRRELGHRLEGLREARRQIKESASQTRDVLKQHFN 60
Query: 61 DLKGTLGKLLDERLVTLLQEVDTIEQETIKPLDDCQKLIEHGVNTAEDLVREGEIAMLGG 120
DLKGTLGKLLDERLVTLLQEVDTIEQETIKPLDDCQKLIEHGVNTAEDLVREGEIAMLGG
Sbjct: 61 DLKGTLGKLLDERLVTLLQEVDTIEQETIKPLDDCQKLIEHGVNTAEDLVREGEIAMLGG 120
Query: 121 VGEENEKLWSFTKKASHIQLDSLPEVPLLVDVPCLSAQLDDSILNIVKDHIFKHGTVASR 180
VGEENEKLWSFTKKASHIQLDSLPEVPLLVDVPCLSAQLDDSILNIVKDHIFKHGTVASR
Sbjct: 121 VGEENEKLWSFTKKASHIQLDSLPEVPLLVDVPCLSAQLDDSILNIVKDHIFKHGTVASR 180
Query: 181 PPVQIEELIEKPGGIIVRWCKVDDDFTAQDYRLQFRKCTSNHFEDVYVGSETEFIVLHID 240
PPVQIEELIEKPGGIIVRWCKVDDDFTAQDYRLQFRKCTSNHFEDVYVGSETEFIVLHID
Sbjct: 181 PPVQIEELIEKPGGIIVRWCKVDDDFTAQDYRLQFRKCTSNHFEDVYVGSETEFIVLHID 240
Query: 241 PNVDYQFRVCARGDGRQEWSPWSVPQIGHSTLVPHEWTAGFEGYSLSSRRNIALRNDSES 300
PNVDYQFRVCARGDGRQEWSPWSVPQIGHSTLVPHEWTAGFEGYSLSSRRNIALRNDSES
Sbjct: 241 PNVDYQFRVCARGDGRQEWSPWSVPQIGHSTLVPHEWTAGFEGYSLSSRRNIALRNDSES 300
Query: 301 SGVLYSRAPTYFCGQTLTFRVETVGQPDRRDSIGVCAEKQDGYDSLQRDQAVCISTNGAV 360
SGVLYSRAPTYFCGQTLTFRVETVGQPDRRDSIGVCAEKQDGYDSLQRDQAVCISTNGAV
Sbjct: 301 SGVLYSRAPTYFCGQTLTFRVETVGQPDRRDSIGVCAEKQDGYDSLQRDQAVCISTNGAV 360
Query: 361 FVNGKEMTNQLPAVTSGSTVTFDIEAVTLGTTSNNEGGHFKLRVTISSNNREVVFDWLLD 420
FVNGKEMTNQLPAVTSGSTVTFDIEAVTLGTTSNNEGGHFKLRVTISSNNREVVFDWLLD
Sbjct: 361 FVNGKEMTNQLPAVTSGSTVTFDIEAVTLGTTSNNEGGHFKLRVTISSNNREVVFDWLLD 420
Query: 421 QSCGSLYFGCSFFYPGWKVLVF 442
QSCGSLYFGCSFFYPGWKVLVF
Sbjct: 421 QSCGSLYFGCSFFYPGWKVLVF 442
>gi|55749708 outer dense fiber of sperm tails 2-like isoform b [Homo
sapiens]
Length = 513
Score = 40.4 bits (93), Expect = 0.003
Identities = 25/108 (23%), Positives = 59/108 (54%), Gaps = 7/108 (6%)
Query: 21 EAAQSYRRELGHRLEGLREARRQIKESASQTRDVLKQHFNDLKGTLGKLLDERLVTLLQE 80
+A++ Y++ L H + + QI++ ++ + + N K K++ E+ L +
Sbjct: 113 KASKVYKQRLDHFTGAIEKLTSQIRDQEAKLSETISAS-NAWKSHYEKIVIEK-TELEVQ 170
Query: 81 VDTIEQETIKPLDDCQKLIEHGVNTAEDLVREGEIAMLGGVGEENEKL 128
++T++++ I L+D +K+ +HG N+ E+++R+ + + ENE L
Sbjct: 171 IETMKKQIINLLEDLKKMEDHGKNSCEEILRK-----VHSIEYENETL 213
>gi|55749696 outer dense fiber of sperm tails 2-like isoform a [Homo
sapiens]
Length = 644
Score = 40.4 bits (93), Expect = 0.003
Identities = 25/108 (23%), Positives = 59/108 (54%), Gaps = 7/108 (6%)
Query: 21 EAAQSYRRELGHRLEGLREARRQIKESASQTRDVLKQHFNDLKGTLGKLLDERLVTLLQE 80
+A++ Y++ L H + + QI++ ++ + + N K K++ E+ L +
Sbjct: 244 KASKVYKQRLDHFTGAIEKLTSQIRDQEAKLSETISAS-NAWKSHYEKIVIEK-TELEVQ 301
Query: 81 VDTIEQETIKPLDDCQKLIEHGVNTAEDLVREGEIAMLGGVGEENEKL 128
++T++++ I L+D +K+ +HG N+ E+++R+ + + ENE L
Sbjct: 302 IETMKKQIINLLEDLKKMEDHGKNSCEEILRK-----VHSIEYENETL 344
>gi|24430212 interleukin 23 receptor precursor [Homo sapiens]
Length = 629
Score = 37.0 bits (84), Expect = 0.036
Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 10/61 (16%)
Query: 238 HIDPNVDYQFRVCARGDGRQEWSPWS----------VPQIGHSTLVPHEWTAGFEGYSLS 287
+++PN+ Y F+V + G++ W PWS VPQ+ W +G S+S
Sbjct: 283 YLEPNIKYVFQVRCQETGKRYWQPWSSLFFHKTPETVPQVTSKAFQHDTWNSGLTVASIS 342
Query: 288 S 288
+
Sbjct: 343 T 343
>gi|154350244 hypothetical protein LOC79632 isoform 2 [Homo sapiens]
Length = 971
Score = 37.0 bits (84), Expect = 0.036
Identities = 47/213 (22%), Positives = 87/213 (40%), Gaps = 35/213 (16%)
Query: 5 MELEPELLLQEARENVEAAQS-YRRELGHRLEGLREARRQIKESASQTRDVLKQHFND-- 61
+ LE + L+++ + AQS Y REL ++ S + D+ K+
Sbjct: 117 LRLERKKLIEDYEGKLNKAQSFYERELDTLKRSQLFTAESLQASKEKEADLRKEFQGQEA 176
Query: 62 -LKGTLGKLLDERLVTLLQEVDTIEQETIKPLDDCQKL------IEHGVNTAE---DLVR 111
L+ T+GKL E + ++ E LD CQKL E+ V + D +
Sbjct: 177 ILRKTIGKLKTE--------LQMVQDEAGSLLDKCQKLQTALAIAENNVQVLQKQLDDAK 228
Query: 112 EGEIAMLGGVGEENEKLWS-----------FTKKASHI---QLDSLPEVPLLVDVPCLSA 157
EGE+A+L E +L + KASHI Q + + + D+ +
Sbjct: 229 EGEMALLSKHKEVESELAAARERLQQQASDLVLKASHIGMLQATQMTQEVTIKDLESEKS 288
Query: 158 QLDDSILNIVKDHIFKHGTVASRPPVQIEELIE 190
++++ + + ++ F S Q ++++E
Sbjct: 289 RVNERLSQLEEERAFLRSKTQSLDEEQKQQILE 321
>gi|154350226 hypothetical protein LOC79632 isoform 1 [Homo sapiens]
Length = 1140
Score = 37.0 bits (84), Expect = 0.036
Identities = 47/213 (22%), Positives = 87/213 (40%), Gaps = 35/213 (16%)
Query: 5 MELEPELLLQEARENVEAAQS-YRRELGHRLEGLREARRQIKESASQTRDVLKQHFND-- 61
+ LE + L+++ + AQS Y REL ++ S + D+ K+
Sbjct: 237 LRLERKKLIEDYEGKLNKAQSFYERELDTLKRSQLFTAESLQASKEKEADLRKEFQGQEA 296
Query: 62 -LKGTLGKLLDERLVTLLQEVDTIEQETIKPLDDCQKL------IEHGVNTAE---DLVR 111
L+ T+GKL E + ++ E LD CQKL E+ V + D +
Sbjct: 297 ILRKTIGKLKTE--------LQMVQDEAGSLLDKCQKLQTALAIAENNVQVLQKQLDDAK 348
Query: 112 EGEIAMLGGVGEENEKLWS-----------FTKKASHI---QLDSLPEVPLLVDVPCLSA 157
EGE+A+L E +L + KASHI Q + + + D+ +
Sbjct: 349 EGEMALLSKHKEVESELAAARERLQQQASDLVLKASHIGMLQATQMTQEVTIKDLESEKS 408
Query: 158 QLDDSILNIVKDHIFKHGTVASRPPVQIEELIE 190
++++ + + ++ F S Q ++++E
Sbjct: 409 RVNERLSQLEEERAFLRSKTQSLDEEQKQQILE 441
>gi|205360934 fibronectin type III domain containing 3B [Homo sapiens]
Length = 1204
Score = 35.4 bits (80), Expect = 0.10
Identities = 16/42 (38%), Positives = 23/42 (54%)
Query: 210 DYRLQFRKCTSNHFEDVYVGSETEFIVLHIDPNVDYQFRVCA 251
+Y LQ + ++ VY G E F + + N DY+FRVCA
Sbjct: 1086 NYILQVLVGRESEYKQVYKGEEATFQISGLQTNTDYRFRVCA 1127
Score = 34.7 bits (78), Expect = 0.18
Identities = 27/97 (27%), Positives = 39/97 (40%), Gaps = 7/97 (7%)
Query: 176 TVASRPPVQIEELIEKP---GGIIVRWCKVDDDFTAQ--DYRLQFRKCTS--NHFEDVYV 228
T RP L++ P G V+W D+ ++ Y L+ S N +E Y
Sbjct: 567 TSPDRPGPPTRPLVKGPVTSHGFSVKWDPPKDNGGSEILKYLLEITDGNSEANQWEVAYS 626
Query: 229 GSETEFIVLHIDPNVDYQFRVCARGDGRQEWSPWSVP 265
GS TE+ H+ P Y+ R C G S+P
Sbjct: 627 GSATEYTFTHLKPGTLYKLRACCISTGGHSQCSESLP 663
>gi|205360932 fibronectin type III domain containing 3B [Homo sapiens]
Length = 1204
Score = 35.4 bits (80), Expect = 0.10
Identities = 16/42 (38%), Positives = 23/42 (54%)
Query: 210 DYRLQFRKCTSNHFEDVYVGSETEFIVLHIDPNVDYQFRVCA 251
+Y LQ + ++ VY G E F + + N DY+FRVCA
Sbjct: 1086 NYILQVLVGRESEYKQVYKGEEATFQISGLQTNTDYRFRVCA 1127
Score = 34.7 bits (78), Expect = 0.18
Identities = 27/97 (27%), Positives = 39/97 (40%), Gaps = 7/97 (7%)
Query: 176 TVASRPPVQIEELIEKP---GGIIVRWCKVDDDFTAQ--DYRLQFRKCTS--NHFEDVYV 228
T RP L++ P G V+W D+ ++ Y L+ S N +E Y
Sbjct: 567 TSPDRPGPPTRPLVKGPVTSHGFSVKWDPPKDNGGSEILKYLLEITDGNSEANQWEVAYS 626
Query: 229 GSETEFIVLHIDPNVDYQFRVCARGDGRQEWSPWSVP 265
GS TE+ H+ P Y+ R C G S+P
Sbjct: 627 GSATEYTFTHLKPGTLYKLRACCISTGGHSQCSESLP 663
>gi|6715600 golgi autoantigen, golgin subfamily a, 4 [Homo sapiens]
Length = 2230
Score = 35.4 bits (80), Expect = 0.10
Identities = 26/103 (25%), Positives = 51/103 (49%), Gaps = 4/103 (3%)
Query: 10 ELLLQEARENVEAAQSYRRELGHRLEGLREARRQIKESASQTRDVLKQHFNDLKGTLGKL 69
E + ++ E ++ Q+ L L + +AR +++E S VLK + +K L
Sbjct: 669 EEMNEKTLEKLDVKQTELESLSSELSEVLKARHKLEEELS----VLKDQTDKMKQELEAK 724
Query: 70 LDERLVTLLQEVDTIEQETIKPLDDCQKLIEHGVNTAEDLVRE 112
+DE+ Q+VD+I +E + +K ++ +N E L++E
Sbjct: 725 MDEQKNHHQQQVDSIIKEHEVSIQRTEKALKDQINQLELLLKE 767
Score = 30.8 bits (68), Expect = 2.6
Identities = 36/136 (26%), Positives = 63/136 (46%), Gaps = 14/136 (10%)
Query: 5 MELEPELLLQEA----RENVEAAQSYRR---ELGHRLE-GLREARRQIKESASQTRDVLK 56
+EL+ + +L E+ R+ + A++YR EL LE L+E + Q K+ A
Sbjct: 540 LELQKKAILTESENKLRDLQQEAETYRTRILELESSLEKSLQENKNQSKDLAVHLEAEKN 599
Query: 57 QHFNDLKGTLGKLLDERLVTLLQEVDTIEQETIKPLD-----DCQKLIEHGVNTAEDLVR 111
+H ++ + K E L +L + D + E ++ L + +KL E E L++
Sbjct: 600 KHNKEITVMVEKHKTE-LESLKHQQDALWTEKLQVLKQQYQTEMEKLREKCEQEKETLLK 658
Query: 112 EGEIAMLGGVGEENEK 127
+ EI + E NEK
Sbjct: 659 DKEIIFQAHIEEMNEK 674
>gi|19924163 muscle specific ring finger protein 1 [Homo sapiens]
Length = 353
Score = 35.0 bits (79), Expect = 0.14
Identities = 21/79 (26%), Positives = 40/79 (50%), Gaps = 7/79 (8%)
Query: 37 LREARRQIKESASQTRDVLKQHFNDLKGTLGKLLDERLVTLLQE-------VDTIEQETI 89
L ++RR KE++ Q ++ L Q F+ L L + E L + QE ++ + Q+
Sbjct: 191 LEDSRRVTKENSHQVKEELSQKFDTLYAILDEKKSELLQRITQEQEKKLSFIEALIQQYQ 250
Query: 90 KPLDDCQKLIEHGVNTAED 108
+ LD KL+E + + ++
Sbjct: 251 EQLDKSTKLVETAIQSLDE 269
>gi|198442834 coiled-coil domain containing 152 [Homo sapiens]
Length = 254
Score = 34.3 bits (77), Expect = 0.23
Identities = 25/100 (25%), Positives = 47/100 (47%), Gaps = 8/100 (8%)
Query: 35 EGLREARRQIKESASQTRDVLKQHFNDLKGTLGKLLDERLVTLLQEVDTIEQETIKPLDD 94
+ L+ Q+K SA ++ LK H + K + KL+ E + + + ++E K D
Sbjct: 84 QNLKGENEQLKISADLIKEKLKSHEQEYKNNIAKLVSEMKI----KEEGYKKEISKLYQD 139
Query: 95 CQKLIEHGVNTAEDLVREGEIAMLGGVGEENEKLWSFTKK 134
Q+ +E ++L+ + E+ + E N KL S K+
Sbjct: 140 MQRKVELNEEKHKELIEKKEME----ISELNAKLRSQEKE 175
>gi|83281200 protogenin [Homo sapiens]
Length = 1150
Score = 33.5 bits (75), Expect = 0.40
Identities = 20/43 (46%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Query: 230 SETEFIVLHIDPNVDYQFRVCARGDGRQEWSPWSVPQIGHSTL 272
SET +V ++PN Y+F V D Q SPWS P + HSTL
Sbjct: 776 SETHMLVQGLEPNTKYEFAVRLHVD--QLSSPWS-PVVYHSTL 815
>gi|93204881 Rab interacting lysosomal protein [Homo sapiens]
Length = 401
Score = 33.5 bits (75), Expect = 0.40
Identities = 25/67 (37%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Query: 14 QEARENVEAAQSYRRELGHRLEGLREARRQIKESASQTRDVLKQHFNDL--KGTLGKLLD 71
QE R E + RREL + R RQ+KE + RD L+ H DL +G + L
Sbjct: 86 QELRRLREENERLRRELRAGPQEERALLRQLKEVTDRQRDELRAHNRDLRQRGQETEALQ 145
Query: 72 ERLVTLL 78
E+L LL
Sbjct: 146 EQLQRLL 152
>gi|75677574 cell cycle progression 1 isoform 2 [Homo sapiens]
Length = 757
Score = 33.5 bits (75), Expect = 0.40
Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 10 ELLLQEARENVEAAQSYRRE-LGHRLEGLREARRQIKESASQTRDVLKQHFNDLKGTLGK 68
E L +E +A ++ +E + H E +++A+ +KE+ + D +K F K T
Sbjct: 483 ETFLGSVKETFDAMKNSTKEFVRHHKEKIKQAKEAVKENLKKFSDSVKSTFRHFKDTTKN 542
Query: 69 LLDER 73
+ DE+
Sbjct: 543 IFDEK 547
>gi|75677585 cell cycle progression 1 isoform 1 [Homo sapiens]
Length = 757
Score = 33.5 bits (75), Expect = 0.40
Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 10 ELLLQEARENVEAAQSYRRE-LGHRLEGLREARRQIKESASQTRDVLKQHFNDLKGTLGK 68
E L +E +A ++ +E + H E +++A+ +KE+ + D +K F K T
Sbjct: 483 ETFLGSVKETFDAMKNSTKEFVRHHKEKIKQAKEAVKENLKKFSDSVKSTFRHFKDTTKN 542
Query: 69 LLDER 73
+ DE+
Sbjct: 543 IFDEK 547
>gi|71061468 centromere protein E [Homo sapiens]
Length = 2701
Score = 33.1 bits (74), Expect = 0.52
Identities = 26/95 (27%), Positives = 49/95 (51%), Gaps = 11/95 (11%)
Query: 12 LLQEARENVEAAQSYRRELGHRLEGLREARRQIKESASQTRDVLKQHFNDLKGTLGK--- 68
L +EA++ + + + EL ++ + L+E R+++E ++ LK+ + TL
Sbjct: 850 LSKEAQKFDSSLGALKTELSYKTQELQEKTREVQERLNEMEQ-LKEQLENRDSTLQTVER 908
Query: 69 ---LLDERLVTLLQEVDTIEQETIKPLDDCQKLIE 100
L+ E+L L+EV T+ QE DD ++L E
Sbjct: 909 EKTLITEKLQQTLEEVKTLTQEK----DDLKQLQE 939
Score = 31.2 bits (69), Expect = 2.0
Identities = 31/111 (27%), Positives = 56/111 (50%), Gaps = 5/111 (4%)
Query: 5 MELEPELLLQEARENVEAAQSYRRE---LGHRLEGLREARRQIKESASQTRDVLKQHFND 61
+E+E L Q+ EN+E +S +E L E L+ R Q+KES +T+ + +
Sbjct: 1866 LEIENLNLAQKLHENLEEMKSVMKERDNLRRVEETLKLERDQLKESLQETKARDLEIQQE 1925
Query: 62 LKGTLGKLLDERLVTLLQEVDTIEQETIKPLDDCQKLIEHGVNTAEDLVRE 112
LK T L E T+ + + I ++TI+ + D QK ++ + + ++E
Sbjct: 1926 LK-TARMLSKEHKETVDKLREKISEKTIQ-ISDIQKDLDKSKDELQKKIQE 1974
>gi|148839466 kalirin, RhoGEF kinase isoform 1 [Homo sapiens]
Length = 2986
Score = 32.7 bits (73), Expect = 0.68
Identities = 29/133 (21%), Positives = 57/133 (42%), Gaps = 22/133 (16%)
Query: 174 HGTVASRPPVQIEELIEKPG----------GIIVRWCKVDD--DFTAQDYRLQFRKCTSN 221
HGT ++ V+++ + P +I+RW + T Y +++R+ S
Sbjct: 2554 HGTTSTSATVKVQGVPAAPNRPIAQERSCTSVILRWLPPSSTGNCTISGYTVEYREEGSQ 2613
Query: 222 HFEDVYVGS-ETEFIVLHIDPNVDYQFRVCARGDGRQEWSPW--SVPQIGHSTLVPHEWT 278
++ + +T ++ + P YQFRV A +PW S+P + E+
Sbjct: 2614 IWQQSVASTLDTYLVIEDLSPGCPYQFRVSAS-------NPWGISLPSEPSEFVRLPEYD 2666
Query: 279 AGFEGYSLSSRRN 291
A +G ++S + N
Sbjct: 2667 AAADGATISWKEN 2679
>gi|68362740 kalirin, RhoGEF kinase isoform 3 [Homo sapiens]
Length = 1289
Score = 32.7 bits (73), Expect = 0.68
Identities = 29/133 (21%), Positives = 57/133 (42%), Gaps = 22/133 (16%)
Query: 174 HGTVASRPPVQIEELIEKPG----------GIIVRWCKVDD--DFTAQDYRLQFRKCTSN 221
HGT ++ V+++ + P +I+RW + T Y +++R+ S
Sbjct: 857 HGTTSTSATVKVQGVPAAPNRPIAQERSCTSVILRWLPPSSTGNCTISGYTVEYREEGSQ 916
Query: 222 HFEDVYVGS-ETEFIVLHIDPNVDYQFRVCARGDGRQEWSPW--SVPQIGHSTLVPHEWT 278
++ + +T ++ + P YQFRV A +PW S+P + E+
Sbjct: 917 IWQQSVASTLDTYLVIEDLSPGCPYQFRVSAS-------NPWGISLPSEPSEFVRLPEYD 969
Query: 279 AGFEGYSLSSRRN 291
A +G ++S + N
Sbjct: 970 AAADGATISWKEN 982
>gi|28610149 interleukin 6 signal transducer isoform 2 precursor
[Homo sapiens]
Length = 329
Score = 32.7 bits (73), Expect = 0.68
Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 5/58 (8%)
Query: 211 YRLQFRKCTSNHFEDV----YVGSETEFIVLHIDPNVDYQFRV-CARGDGRQEWSPWS 263
Y +Q+R ++ + + + + F V + P +Y FR+ C + DG+ WS WS
Sbjct: 257 YNIQYRTKDASTWSQIPPEDTASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWS 314
>gi|28610147 interleukin 6 signal transducer isoform 1 precursor
[Homo sapiens]
Length = 918
Score = 32.7 bits (73), Expect = 0.68
Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 5/58 (8%)
Query: 211 YRLQFRKCTSNHFEDV----YVGSETEFIVLHIDPNVDYQFRV-CARGDGRQEWSPWS 263
Y +Q+R ++ + + + + F V + P +Y FR+ C + DG+ WS WS
Sbjct: 257 YNIQYRTKDASTWSQIPPEDTASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWS 314
>gi|21735548 centrosomal protein 2 [Homo sapiens]
Length = 2442
Score = 32.7 bits (73), Expect = 0.68
Identities = 27/97 (27%), Positives = 48/97 (49%), Gaps = 4/97 (4%)
Query: 6 ELEPELLLQEARE-NVEAAQSYRRELGHRLEGLREARRQIKESASQTRDVLKQHFNDLKG 64
E E LQE E V ++ + L + L E +++ Q +++ KQ +++
Sbjct: 1398 ERERAQALQEQGELKVAQGKALQENLALLTQTLAEREEEVETLRGQIQELEKQR--EMQK 1455
Query: 65 TLGKLLDERLVTLLQEVDTIEQETIKPLDDCQKLIEH 101
+LL L QEVD ++QE I+ L+ C+ ++EH
Sbjct: 1456 AALELLSLDLKKRNQEVD-LQQEQIQELEKCRSVLEH 1491
>gi|74229017 2'-5'-oligoadenylate synthetase 2 isoform 2 [Homo
sapiens]
Length = 687
Score = 32.7 bits (73), Expect = 0.68
Identities = 15/36 (41%), Positives = 24/36 (66%)
Query: 79 QEVDTIEQETIKPLDDCQKLIEHGVNTAEDLVREGE 114
Q++ QE +KP ++CQ LI+ VNT D+++E E
Sbjct: 14 QKLGWFIQEYLKPYEECQTLIDEMVNTICDVLQEPE 49
>gi|74229021 2'-5'-oligoadenylate synthetase 2 isoform 3 [Homo
sapiens]
Length = 172
Score = 32.7 bits (73), Expect = 0.68
Identities = 15/36 (41%), Positives = 24/36 (66%)
Query: 79 QEVDTIEQETIKPLDDCQKLIEHGVNTAEDLVREGE 114
Q++ QE +KP ++CQ LI+ VNT D+++E E
Sbjct: 14 QKLGWFIQEYLKPYEECQTLIDEMVNTICDVLQEPE 49
>gi|74229019 2'-5'-oligoadenylate synthetase 2 isoform 1 [Homo
sapiens]
Length = 719
Score = 32.7 bits (73), Expect = 0.68
Identities = 15/36 (41%), Positives = 24/36 (66%)
Query: 79 QEVDTIEQETIKPLDDCQKLIEHGVNTAEDLVREGE 114
Q++ QE +KP ++CQ LI+ VNT D+++E E
Sbjct: 14 QKLGWFIQEYLKPYEECQTLIDEMVNTICDVLQEPE 49
>gi|47174859 tripartite motif-containing 46 [Homo sapiens]
Length = 759
Score = 32.7 bits (73), Expect = 0.68
Identities = 41/159 (25%), Positives = 69/159 (43%), Gaps = 29/159 (18%)
Query: 37 LREARRQIKESASQTRDVLKQHFNDLKGTLGKLLDERLVTLLQEVDTIEQETIKPLDDCQ 96
L EA R + S Q ++ + Q L LG +L+E+ +LLQ ++ +QE + L
Sbjct: 295 LEEAVRHTEVSGQQAKEEVSQ----LVRGLGAVLEEKRASLLQAIEECQQERLARLS--A 348
Query: 97 KLIEHG--------VNTAEDLVREGE--------IAMLGGVGEENEKLWSFTKKAS---- 136
++ EH V A+++++E + + + E L +F AS
Sbjct: 349 QIQEHRSLLDGSGLVGYAQEVLKETDQPCFVQAAKQLHNRIARATEALQTFRPAASSSFR 408
Query: 137 HIQLDSLPEVPLLVDVPCL---SAQLDDSILNIVKDHIF 172
H QLD E+ LL ++ L A + D+ D IF
Sbjct: 409 HCQLDVGREMKLLTELNFLRVPEAPVIDTQRTFAYDQIF 447
>gi|19920317 cytoskeleton-associated protein 4 [Homo sapiens]
Length = 602
Score = 32.3 bits (72), Expect = 0.88
Identities = 28/123 (22%), Positives = 54/123 (43%), Gaps = 12/123 (9%)
Query: 13 LQEARENVEAAQSYRRELGHRLEGLREARRQIKESASQTRDVLK--QHFNDLKGTLGKLL 70
+Q+ R + + R ELG L+G+ + + ++ + +L+ QH DL K
Sbjct: 134 VQQVRRSHQDFSRQREELGQGLQGVEQKVQSLQATFGTFESILRSSQHKQDLTEKAVKQG 193
Query: 71 DERLVTLLQEVDTIEQETIKPLDDCQKLIEHGVNTAEDLVREGEIAMLGGVGEENEKLWS 130
+ + + + + ++ E +K L D G++ +D RE + L E E+L
Sbjct: 194 ESEVSRISEVLQKLQNEILKDLSD-------GIHVVKD-ARERDFTSLENTVE--ERLTE 243
Query: 131 FTK 133
TK
Sbjct: 244 LTK 246
>gi|118918395 fibronectin type III domain containing 3A isoform 1
[Homo sapiens]
Length = 1198
Score = 32.3 bits (72), Expect = 0.88
Identities = 14/41 (34%), Positives = 22/41 (53%)
Query: 211 YRLQFRKCTSNHFEDVYVGSETEFIVLHIDPNVDYQFRVCA 251
Y LQ + F+ +Y G ++ F + N +Y+FRVCA
Sbjct: 1080 YSLQVMLGKDSEFKQIYKGPDSSFRYSSLQLNCEYRFRVCA 1120
>gi|118918397 fibronectin type III domain containing 3A isoform 2
[Homo sapiens]
Length = 1142
Score = 32.3 bits (72), Expect = 0.88
Identities = 14/41 (34%), Positives = 22/41 (53%)
Query: 211 YRLQFRKCTSNHFEDVYVGSETEFIVLHIDPNVDYQFRVCA 251
Y LQ + F+ +Y G ++ F + N +Y+FRVCA
Sbjct: 1024 YSLQVMLGKDSEFKQIYKGPDSSFRYSSLQLNCEYRFRVCA 1064
>gi|30089940 Golgi autoantigen, golgin subfamily a, 3 [Homo sapiens]
Length = 1498
Score = 32.3 bits (72), Expect = 0.88
Identities = 26/108 (24%), Positives = 50/108 (46%), Gaps = 9/108 (8%)
Query: 10 ELLLQEARENVEAAQSYRRELGHRLEGLREARRQIKESASQTRDVLKQHFNDLKGTLGKL 69
+L L + + +EA Q +L +L +EA +S Q+ D L+ H+++L+ LG+L
Sbjct: 702 KLTLLQRDQQLEALQQEHLDLMKQLTLTQEAL----QSREQSLDALQTHYDELQARLGEL 757
Query: 70 LDER-----LVTLLQEVDTIEQETIKPLDDCQKLIEHGVNTAEDLVRE 112
E + LLQ I + ++ ++ ++ G E+ E
Sbjct: 758 QGEAASREDTICLLQNEKIILEAALQAAKSGKEELDRGARRLEEGTEE 805
>gi|4505501 oxidized low density lipoprotein (lectin-like) receptor
1 [Homo sapiens]
Length = 273
Score = 31.6 bits (70), Expect = 1.5
Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 7/77 (9%)
Query: 33 RLEGLREARRQIKESASQTRDVLKQHFNDLKGTLGKLLDERLVTLLQEVDTIEQETIKPL 92
+LEG AR+Q +E++ ++ + LK+ L L + E++ Q ++ QET+K +
Sbjct: 80 KLEGQISARQQAEEASQESENELKEMIETLARKLNEKSKEQMELHHQNLNL--QETLKRV 137
Query: 93 DDC-----QKLIEHGVN 104
+C Q I HG N
Sbjct: 138 ANCSAPCPQDWIWHGEN 154
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.136 0.406
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,790,959
Number of Sequences: 37866
Number of extensions: 738146
Number of successful extensions: 2590
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 72
Number of HSP's that attempted gapping in prelim test: 2375
Number of HSP's gapped (non-prelim): 298
length of query: 442
length of database: 18,247,518
effective HSP length: 105
effective length of query: 337
effective length of database: 14,271,588
effective search space: 4809525156
effective search space used: 4809525156
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.