Guide to the Human Genome
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Name: IL6ST Sequence: fasta or formatted (329aa) NCBI GI: 28610149
Description:

interleukin 6 signal transducer isoform 2 precursor

Referenced in:

Interleukins and Their Receptors

Other entries for this name:
alt prot [918aa] interleukin 6 signal transducer isoform 1 precursor
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.3         14           1
 C cysteine            2.7          9           1
 D aspartate           4.6         15           1
 E glutamate           7.0         23           2
 F phenylalanine       4.6         15           1
 G glycine             3.6         12           2
 H histidine           2.1          7           1
 I isoleucine          7.6         25           2
 K lysine              6.7         22           2
 L leucine             7.3         24           2
 M methionine          1.2          4           1
 N asparagine          6.1         20           1
 P proline             4.9         16           2
 Q glutamine           3.0         10           1
 R arginine            2.4          8           1
 S serine              8.5         28           2
 T threonine          10.0         33           2
 V valine              6.7         22           2
 W tryptophan          2.7          9           1
 Y tyrosine            4.0         13           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   interleukin 6 signal transducer isoform 2 precursor ... 
IL6ST                 0.986   interleukin 6 signal transducer isoform 1 precursor ...
CSF3R                 0.150   colony stimulating factor 3 receptor isoform d precu...
CSF3R                 0.150   colony stimulating factor 3 receptor isoform c precu...
CSF3R                 0.150   colony stimulating factor 3 receptor isoform b precu...
CSF3R                 0.150   colony stimulating factor 3 receptor isoform a precur...
CRLF1                 0.147   cytokine receptor-like factor 1 
IL31RA                0.112   gp130-like monocyte receptor 
IL12RB2               0.100   interleukin 12 receptor, beta 2 precursor 
LIFR                  0.090   leukemia inhibitory factor receptor precursor 
LIFR                  0.090   leukemia inhibitory factor receptor precursor [Homo...
IL23R                 0.074   interleukin 23 receptor precursor 
PRLR                  0.073   prolactin receptor 
CNTFR                 0.061   ciliary neurotrophic factor receptor preproprotein [...
CNTFR                 0.061   ciliary neurotrophic factor receptor preproprotein [H...
LEPR                  0.056   leptin receptor isoform 3 
LEPR                  0.056   leptin receptor isoform 2 
LEPR                  0.056   leptin receptor isoform 1 
EPHA8                 0.052   ephrin receptor EphA8 isoform 1 precursor 
OSMR                  0.052   oncostatin M receptor 
IL6R                  0.050   interleukin 6 receptor isoform 1 precursor 
IL6R                  0.050   interleukin 6 receptor isoform 2 precursor 
IL13RA1               0.049   interleukin 13 receptor, alpha 1 precursor 
IL11RA                0.043   interleukin 11 receptor, alpha isoform 1 precursor ...
IL11RA                0.043   interleukin 11 receptor, alpha isoform 2 precursor [...
IL11RA                0.043   interleukin 11 receptor, alpha isoform 1 precursor [H...
EPHA7                 0.043   ephrin receptor EphA7 
EPHA6                 0.038   EPH receptor A6 isoform a 
SDK2                  0.035   sidekick 2 
TTN                   0.033   titin isoform N2-A 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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