Guide to the Human Genome
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Name: IL6ST Sequence: fasta or formatted (918aa) NCBI GI: 28610147
Description:

interleukin 6 signal transducer isoform 1 precursor

Referenced in:

Interleukins and Their Receptors

Other entries for this name:
alt prot [329aa] interleukin 6 signal transducer isoform 2 precursor
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.5         41           2
 C cysteine            2.0         18           1
 D aspartate           5.6         51           1
 E glutamate           6.5         60           2
 F phenylalanine       4.0         37           1
 G glycine             5.0         46           2
 H histidine           2.5         23           1
 I isoleucine          5.2         48           2
 K lysine              6.4         59           2
 L leucine             7.1         65           2
 M methionine          1.6         15           1
 N asparagine          4.7         43           1
 P proline             5.9         54           2
 Q glutamine           4.6         42           2
 R arginine            3.4         31           1
 S serine              9.3         85           3
 T threonine           8.6         79           2
 V valine              7.4         68           2
 W tryptophan          2.1         19           1
 Y tyrosine            3.7         34           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   interleukin 6 signal transducer isoform 1 precursor ... 
IL6ST                 0.348   interleukin 6 signal transducer isoform 2 precursor ...
IL31RA                0.123   gp130-like monocyte receptor 
CSF3R                 0.120   colony stimulating factor 3 receptor isoform a precur...
CSF3R                 0.118   colony stimulating factor 3 receptor isoform d precu...
CSF3R                 0.116   colony stimulating factor 3 receptor isoform c precu...
CSF3R                 0.102   colony stimulating factor 3 receptor isoform b precu...
LIFR                  0.087   leukemia inhibitory factor receptor precursor 
LIFR                  0.087   leukemia inhibitory factor receptor precursor [Homo...
IL12RB2               0.076   interleukin 12 receptor, beta 2 precursor 
OSMR                  0.059   oncostatin M receptor 
CRLF1                 0.052   cytokine receptor-like factor 1 
LEPR                  0.042   leptin receptor isoform 3 
LEPR                  0.042   leptin receptor isoform 2 
LEPR                  0.042   leptin receptor isoform 1 
IL27RA                0.033   class I cytokine receptor 
PTPRD                 0.030   protein tyrosine phosphatase, receptor type, D isofor...
PTPRD                 0.030   protein tyrosine phosphatase, receptor type, D isofo...
PTPRD                 0.030   protein tyrosine phosphatase, receptor type, D isofo...
PTPRF                 0.027   protein tyrosine phosphatase, receptor type, F isof...
PTPRF                 0.027   protein tyrosine phosphatase, receptor type, F isof...
SDK2                  0.027   sidekick 2 
SDK1                  0.026   sidekick 1 
IL23R                 0.026   interleukin 23 receptor precursor 
NRCAM                 0.026   neuronal cell adhesion molecule isoform B precursor ...
PRLR                  0.026   prolactin receptor 
NRCAM                 0.026   neuronal cell adhesion molecule isoform A precursor ...
CNTFR                 0.023   ciliary neurotrophic factor receptor preproprotein [...
CNTFR                 0.023   ciliary neurotrophic factor receptor preproprotein [H...
TTN                   0.020   titin isoform N2-A 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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