Guide to the Human Genome
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Name: OLR1 Sequence: fasta or formatted (273aa) NCBI GI: 4505501
Description:

oxidized low density lipoprotein (lectin-like) receptor 1

Referenced in:

Lectin Families
Lipoproteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.1         22           3
 C cysteine            3.3          9           1
 D aspartate           3.7         10           2
 E glutamate           7.0         19           2
 F phenylalanine       3.3          9           1
 G glycine             4.8         13           1
 H histidine           1.8          5           2
 I isoleucine          4.0         11           1
 K lysine              7.3         20           3
 L leucine            12.1         33           2
 M methionine          2.6          7           1
 N asparagine          4.8         13           1
 P proline             3.7         10           1
 Q glutamine           8.4         23           2
 R arginine            3.3          9           2
 S serine              8.8         24           2
 T threonine           4.0         11           1
 V valine              3.7         10           2
 W tryptophan          2.9          8           2
 Y tyrosine            2.6          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   oxidized low density lipoprotein (lectin-like) recept... 
CLEC7A                0.196   dendritic cell-associated C-type lectin 1 isoform a ...
CLEC7A                0.176   dendritic cell-associated C-type lectin 1 isoform e ...
CLEC12B               0.176   C-type lectin domain family 12, member B isoform 1 ...
CLEC7A                0.174   dendritic cell-associated C-type lectin 1 isoform b ...
CLEC1A                0.164   C-type lectin-like receptor-1 
CLEC9A                0.146   C-type lectin domain family 9, member A 
CD209                 0.140   CD209 molecule isoform 7 
CD209                 0.140   CD209 molecule isoform 5 
CLEC12B               0.131   C-type lectin domain family 12, member B isoform 2 ...
CD209                 0.123   CD209 molecule isoform 3 
CD209                 0.123   CD209 molecule isoform 6 
CD209                 0.123   CD209 molecule isoform 1 
CLEC4M                0.123   C-type lectin domain family 4, member M isoform 7 [...
CLEC1B                0.121   C-type lectin domain family 1, member B isoform a [...
CLEC12A               0.118   myeloid inhibitory C-type lectin-like receptor isofo...
KLRK1                 0.110   NKG2-D type II integral membrane protein 
CLEC4M                0.108   C-type lectin domain family 4, member M isoform 11 ...
CD209                 0.108   CD209 molecule isoform 8 
CD209                 0.107   CD209 molecule isoform 4 
CLEC1B                0.107   C-type lectin domain family 1, member B isoform b [...
CLEC4M                0.105   C-type lectin domain family 4, member M isoform 9 [...
CLEC4M                0.103   C-type lectin domain family 4, member M isoform 12 ...
CLEC4M                0.103   C-type lectin domain family 4, member M isoform 2 [...
CLEC12A               0.103   myeloid inhibitory C-type lectin-like receptor isofo...
CLEC4M                0.103   C-type lectin domain family 4, member M isoform 8 [...
CLEC4M                0.103   C-type lectin domain family 4, member M isoform 1 [H...
CLEC2L                0.092   C-type lectin domain family 2, member L 
KLRD1                 0.088   killer cell lectin-like receptor subfamily D, membe...
KLRD1                 0.088   killer cell lectin-like receptor subfamily D, member ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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