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Search of human proteins with 154813201
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|154813201 cartilage paired-class homeoprotein 1 [Homo
sapiens]
(326 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|154813201 cartilage paired-class homeoprotein 1 [Homo sapiens] 668 0.0
gi|55743092 aristaless-like homeobox 4 [Homo sapiens] 232 4e-61
gi|113204604 aristaless-like homeobox 3 [Homo sapiens] 204 9e-53
gi|24497589 aristaless related homeobox [Homo sapiens] 135 6e-32
gi|24234711 paired-like homeodomain transcription factor 2 isofo... 120 2e-27
gi|21361183 paired-like homeodomain transcription factor 2 isofo... 119 4e-27
gi|24234708 paired-like homeodomain transcription factor 2 isofo... 119 4e-27
gi|34365783 visual system homeobox 2 [Homo sapiens] 109 4e-24
gi|11056038 visual system homeobox 1 isoform a [Homo sapiens] 107 1e-23
gi|4826912 paired-like homeodomain 3 [Homo sapiens] 104 9e-23
gi|152963644 paired-like homeodomain transcription factor 1 [Hom... 104 9e-23
gi|4505619 paired box 7 isoform 1 [Homo sapiens] 104 1e-22
gi|207029223 paired box 7 isoform 3 [Homo sapiens] 104 1e-22
gi|239754062 PREDICTED: orthopedia homeobox [Homo sapiens] 104 1e-22
gi|14149760 orthopedia homeobox [Homo sapiens] 104 1e-22
gi|7524359 paired box 7 isoform 2 [Homo sapiens] 103 3e-22
gi|12707580 paired-like homeobox 2b [Homo sapiens] 102 6e-22
gi|46249382 paired-like homeobox 2a [Homo sapiens] 102 6e-22
gi|188219638 paired box 3 isoform PAX3i [Homo sapiens] 100 2e-21
gi|31563348 paired box 3 isoform PAX3g [Homo sapiens] 100 2e-21
gi|31563346 paired box 3 isoform PAX3h [Homo sapiens] 100 2e-21
gi|31563344 paired box 3 isoform PAX3e [Homo sapiens] 100 2e-21
gi|31563342 paired box 3 isoform PAX3d [Homo sapiens] 100 2e-21
gi|31563340 paired box 3 isoform PAX3 [Homo sapiens] 100 2e-21
gi|122937321 UNC homeobox [Homo sapiens] 100 2e-21
gi|122937484 dorsal root ganglia homeobox [Homo sapiens] 100 2e-21
gi|126116581 retina and anterior neural fold homeobox [Homo sapi... 99 7e-21
gi|57232759 intestine-specific homeobox [Homo sapiens] 97 1e-20
gi|5902024 paired mesoderm homeobox 1 isoform pmx-1a [Homo sapiens] 96 4e-20
gi|12707577 paired mesoderm homeobox 1 isoform pmx-1b [Homo sapi... 96 4e-20
>gi|154813201 cartilage paired-class homeoprotein 1 [Homo sapiens]
Length = 326
Score = 668 bits (1724), Expect = 0.0
Identities = 326/326 (100%), Positives = 326/326 (100%)
Query: 1 MEFLSEKFALKSPPSKNSDFYMGAGGPLEHVMETLDNESFYSKASAGKCVQAFGPLPRAE 60
MEFLSEKFALKSPPSKNSDFYMGAGGPLEHVMETLDNESFYSKASAGKCVQAFGPLPRAE
Sbjct: 1 MEFLSEKFALKSPPSKNSDFYMGAGGPLEHVMETLDNESFYSKASAGKCVQAFGPLPRAE 60
Query: 61 HHVRLERTSPCQDSSVNYGITKVEGQPLHTELNRAMDNCNSLRMSPVKGMQEKGELDELG 120
HHVRLERTSPCQDSSVNYGITKVEGQPLHTELNRAMDNCNSLRMSPVKGMQEKGELDELG
Sbjct: 61 HHVRLERTSPCQDSSVNYGITKVEGQPLHTELNRAMDNCNSLRMSPVKGMQEKGELDELG 120
Query: 121 DKCDSNVSSSKKRRHRTTFTSLQLEELEKVFQKTHYPDVYVREQLALRTELTEARVQVWF 180
DKCDSNVSSSKKRRHRTTFTSLQLEELEKVFQKTHYPDVYVREQLALRTELTEARVQVWF
Sbjct: 121 DKCDSNVSSSKKRRHRTTFTSLQLEELEKVFQKTHYPDVYVREQLALRTELTEARVQVWF 180
Query: 181 QNRRAKWRKRERYGQIQQAKSHFAATYDISVLPRTDSYPQIQNNLWAGNASGGSVVTSCM 240
QNRRAKWRKRERYGQIQQAKSHFAATYDISVLPRTDSYPQIQNNLWAGNASGGSVVTSCM
Sbjct: 181 QNRRAKWRKRERYGQIQQAKSHFAATYDISVLPRTDSYPQIQNNLWAGNASGGSVVTSCM 240
Query: 241 LPRDTSSCMTPYSHSPRTDSSYTGFSNHQNQFSHVPLNNFFTDSLLTGATNGHAFETKPE 300
LPRDTSSCMTPYSHSPRTDSSYTGFSNHQNQFSHVPLNNFFTDSLLTGATNGHAFETKPE
Sbjct: 241 LPRDTSSCMTPYSHSPRTDSSYTGFSNHQNQFSHVPLNNFFTDSLLTGATNGHAFETKPE 300
Query: 301 FERRSSSIAVLRMKAKEHTANISWAM 326
FERRSSSIAVLRMKAKEHTANISWAM
Sbjct: 301 FERRSSSIAVLRMKAKEHTANISWAM 326
>gi|55743092 aristaless-like homeobox 4 [Homo sapiens]
Length = 411
Score = 232 bits (591), Expect = 4e-61
Identities = 123/232 (53%), Positives = 162/232 (69%), Gaps = 9/232 (3%)
Query: 101 SLRMSPVKGMQEKGELDELG--DKCDSNVSSSKKRRHRTTFTSLQLEELEKVFQKTHYPD 158
S++ + VKG Q++ D +K DS + KKRR+RTTFTS QLEELEKVFQKTHYPD
Sbjct: 181 SVKEAGVKGPQDRASSDLPSPLEKADSESNKGKKRRNRTTFTSYQLEELEKVFQKTHYPD 240
Query: 159 VYVREQLALRTELTEARVQVWFQNRRAKWRKRERYGQIQQAKSHFAATYDISVLPRTDSY 218
VY REQLA+RT+LTEARVQVWFQNRRAKWRKRER+GQ+QQ ++HF+ Y++ +L R ++Y
Sbjct: 241 VYAREQLAMRTDLTEARVQVWFQNRRAKWRKRERFGQMQQVRTHFSTAYELPLLTRAENY 300
Query: 219 PQIQNNLWAGNASGGSVVTSCMLPRD-TSSCMTPYSHSPRTD-SSYTGFSNHQNQFSHV- 275
QIQN W GN S V +C++P D +CM+P++H P + SS T F + SHV
Sbjct: 301 AQIQNPSWLGNNGAASPVPACVVPCDPVPACMSPHAHPPGSGASSVTDFLSVSGAGSHVG 360
Query: 276 --PLNNFFTDSLLTGATNGHAFETKPEFERRSSSIAVLRMKAKEHTANISWA 325
+ + F + L+ NG+ +P +R++SSIA LRMKAKEH+A ISWA
Sbjct: 361 QTHMGSLFGAASLSPGLNGYELNGEP--DRKTSSIAALRMKAKEHSAAISWA 410
>gi|113204604 aristaless-like homeobox 3 [Homo sapiens]
Length = 343
Score = 204 bits (519), Expect = 9e-53
Identities = 108/207 (52%), Positives = 137/207 (66%), Gaps = 6/207 (2%)
Query: 119 LGDKCDSNVSSSKKRRHRTTFTSLQLEELEKVFQKTHYPDVYVREQLALRTELTEARVQV 178
L D + + SKKRR+RTTF++ QLEELEKVFQKTHYPDVY REQLALRT+LTEARVQV
Sbjct: 140 LPDSMELAKNKSKKRRNRTTFSTFQLEELEKVFQKTHYPDVYAREQLALRTDLTEARVQV 199
Query: 179 WFQNRRAKWRKRERYGQIQQAKSHFAATYDISVLPRTDSYPQIQNNLWAGNASGGSVVTS 238
WFQNRRAKWRKRERYG+IQ+ ++ F A YDISVLPRTDS+PQ+QN+LWA SG
Sbjct: 200 WFQNRRAKWRKRERYGKIQEGRNPFTAAYDISVLPRTDSHPQLQNSLWASPGSGSPGGPC 259
Query: 239 CMLPRD-TSSCMTPYSHSPRTDSSYTGFSNHQNQFSHVPLNNFFTDSLLTGATNGHAFET 297
+ P S CM+PYSH + + + G + + F +L GH+FE
Sbjct: 260 LVSPEGIPSPCMSPYSHPHGSVAGFMGVPAPSAAHPGIYSIHGFPPTL-----GGHSFEP 314
Query: 298 KPEFERRSSSIAVLRMKAKEHTANISW 324
+ + +S S+ LR+K KE ++W
Sbjct: 315 SSDGDYKSPSLVSLRVKPKEPPGLLNW 341
>gi|24497589 aristaless related homeobox [Homo sapiens]
Length = 562
Score = 135 bits (339), Expect = 6e-32
Identities = 93/238 (39%), Positives = 125/238 (52%), Gaps = 40/238 (16%)
Query: 120 GDKCDSNVSSSKKRRHRTTFTSLQLEELEKVFQKTHYPDVYVREQLALRTELTEARVQVW 179
G + + K+RR+RTTFTS QLEELE+ FQKTHYPDV+ RE+LA+R +LTEARVQVW
Sbjct: 316 GSDSEEGLLKRKQRRYRTTFTSYQLEELERAFQKTHYPDVFTREELAMRLDLTEARVQVW 375
Query: 180 FQNRRAKWRKRERYGQIQQAKSH---------FAATYDIS----VLPRTDSYPQIQNNLW 226
FQNRRAKWRKRE+ G A++H +AT+ +S P +P + +
Sbjct: 376 FQNRRAKWRKREKAG----AQTHPPGLPFPGPLSATHPLSPYLDASPFPPHHPALDSAWT 431
Query: 227 AGNASGGSVVTSCMLPRDTSSCMTPYSHSPRTDSSYTGFS--NHQNQFSHVPLNNFFTDS 284
A A+ + S LP S P S +P S++ G + H S F T +
Sbjct: 432 AAAAAAAAAFPS--LPPPPGSASLPPSGAPLGLSTFLGAAVFRHPAFISPAFGRLFSTMA 489
Query: 285 LLTGATNGHAFETKP-------------------EFERRSSSIAVLRMKAKEHTANIS 323
LT A+ A +P +RR+SSIA LR+KAKEH A ++
Sbjct: 490 PLTSASTAAALLRQPTPAVEGAVASGALADPATAAADRRASSIAALRLKAKEHAAQLT 547
>gi|24234711 paired-like homeodomain transcription factor 2 isoform
a [Homo sapiens]
Length = 271
Score = 120 bits (301), Expect = 2e-27
Identities = 87/246 (35%), Positives = 127/246 (51%), Gaps = 25/246 (10%)
Query: 98 NCNSLRMSPV---KGMQEKGELDELGDKCDSNVSSSKKRRHRTTFTSLQLEELEKVFQKT 154
NC L + V K ++G+ +++G + S ++RR RT FTS QL+ELE FQ+
Sbjct: 4 NCRKLVSACVQLEKDKSQQGKNEDVGAEDPSK--KKRQRRQRTHFTSQQLQELEATFQRN 61
Query: 155 HYPDVYVREQLALRTELTEARVQVWFQNRRAKWRKRERYGQIQQAKSHFAATYDISVLPR 214
YPD+ RE++A+ T LTEARV+VWF+NRRAKWRKRER Q + K+ F ++ + P
Sbjct: 62 RYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKRERNQQAELCKNGFGPQFNGLMQPY 121
Query: 215 TDSYPQIQNNLWAGNASGGSVVTSCMLPRDTSSCMTPYS----HSPRTDSSYTGFSNHQ- 269
D YP N WA + +++ P S + P S SP S S+
Sbjct: 122 DDMYPGYSYNNWAAKGLTSASLSTKSFPFFNSMNVNPLSSQSMFSPPNSISSMSMSSSMV 181
Query: 270 -NQFSHVP---------LNNFFTDSLLTGATN---GHAFETKPEFERR--SSSIAVLRMK 314
+ + VP LNN + SL + +A T P R +SS+A LR+K
Sbjct: 182 PSAVTGVPGSSLNSLNNLNNLSSPSLNSAVPTPACPYAPPTPPYVYRDTCNSSLASLRLK 241
Query: 315 AKEHTA 320
AK+H++
Sbjct: 242 AKQHSS 247
>gi|21361183 paired-like homeodomain transcription factor 2 isoform
c [Homo sapiens]
Length = 324
Score = 119 bits (298), Expect = 4e-27
Identities = 83/233 (35%), Positives = 122/233 (52%), Gaps = 22/233 (9%)
Query: 108 KGMQEKGELDELGDKCDSNVSSSKKRRHRTTFTSLQLEELEKVFQKTHYPDVYVREQLAL 167
K ++G+ +++G + S ++RR RT FTS QL+ELE FQ+ YPD+ RE++A+
Sbjct: 70 KDKSQQGKNEDVGAEDPSK--KKRQRRQRTHFTSQQLQELEATFQRNRYPDMSTREEIAV 127
Query: 168 RTELTEARVQVWFQNRRAKWRKRERYGQIQQAKSHFAATYDISVLPRTDSYPQIQNNLWA 227
T LTEARV+VWF+NRRAKWRKRER Q + K+ F ++ + P D YP N WA
Sbjct: 128 WTNLTEARVRVWFKNRRAKWRKRERNQQAELCKNGFGPQFNGLMQPYDDMYPGYSYNNWA 187
Query: 228 GNASGGSVVTSCMLPRDTSSCMTPYS----HSPRTDSSYTGFSNHQ--NQFSHVP----- 276
+ +++ P S + P S SP S S+ + + VP
Sbjct: 188 AKGLTSASLSTKSFPFFNSMNVNPLSSQSMFSPPNSISSMSMSSSMVPSAVTGVPGSSLN 247
Query: 277 ----LNNFFTDSLLTGATN---GHAFETKPEFERR--SSSIAVLRMKAKEHTA 320
LNN + SL + +A T P R +SS+A LR+KAK+H++
Sbjct: 248 SLNNLNNLSSPSLNSAVPTPACPYAPPTPPYVYRDTCNSSLASLRLKAKQHSS 300
>gi|24234708 paired-like homeodomain transcription factor 2 isoform
b [Homo sapiens]
Length = 317
Score = 119 bits (298), Expect = 4e-27
Identities = 83/233 (35%), Positives = 122/233 (52%), Gaps = 22/233 (9%)
Query: 108 KGMQEKGELDELGDKCDSNVSSSKKRRHRTTFTSLQLEELEKVFQKTHYPDVYVREQLAL 167
K ++G+ +++G + S ++RR RT FTS QL+ELE FQ+ YPD+ RE++A+
Sbjct: 63 KDKSQQGKNEDVGAEDPSK--KKRQRRQRTHFTSQQLQELEATFQRNRYPDMSTREEIAV 120
Query: 168 RTELTEARVQVWFQNRRAKWRKRERYGQIQQAKSHFAATYDISVLPRTDSYPQIQNNLWA 227
T LTEARV+VWF+NRRAKWRKRER Q + K+ F ++ + P D YP N WA
Sbjct: 121 WTNLTEARVRVWFKNRRAKWRKRERNQQAELCKNGFGPQFNGLMQPYDDMYPGYSYNNWA 180
Query: 228 GNASGGSVVTSCMLPRDTSSCMTPYS----HSPRTDSSYTGFSNHQ--NQFSHVP----- 276
+ +++ P S + P S SP S S+ + + VP
Sbjct: 181 AKGLTSASLSTKSFPFFNSMNVNPLSSQSMFSPPNSISSMSMSSSMVPSAVTGVPGSSLN 240
Query: 277 ----LNNFFTDSLLTGATN---GHAFETKPEFERR--SSSIAVLRMKAKEHTA 320
LNN + SL + +A T P R +SS+A LR+KAK+H++
Sbjct: 241 SLNNLNNLSSPSLNSAVPTPACPYAPPTPPYVYRDTCNSSLASLRLKAKQHSS 293
>gi|34365783 visual system homeobox 2 [Homo sapiens]
Length = 361
Score = 109 bits (272), Expect = 4e-24
Identities = 73/195 (37%), Positives = 99/195 (50%), Gaps = 24/195 (12%)
Query: 131 KKRRHRTTFTSLQLEELEKVFQKTHYPDVYVREQLALRTELTEARVQVWFQNRRAKWRKR 190
KKRRHRT FTS QLEELEK F + HYPDVY RE LA++TEL E R+QVWFQNRRAKWRKR
Sbjct: 147 KKRRHRTIFTSYQLEELEKAFNEAHYPDVYAREMLAMKTELPEDRIQVWFQNRRAKWRKR 206
Query: 191 ERYGQIQQAKSHFAATYDISVLPRTDSYPQIQNNLWAGNASGGSVVTSCMLPRDTSSCMT 250
E+ +S A Y + S P ++ L ++ ++ SC
Sbjct: 207 EKC----WGRSSVMAEYGLYGAMVRHSIPLPESIL---KSAKDGIMDSC----------A 249
Query: 251 PY---SHSPRTDSSYTGFSNHQNQFSHVPLNNFFTDSLLTGATNGHAFETKPEFERRSSS 307
P+ H +++ + + +P D + A + E R +S
Sbjct: 250 PWLLGMHKKSLEAAAESGRKPEGERQALPK----LDKMEQDERGPDAQAAISQEELRENS 305
Query: 308 IAVLRMKAKEHTANI 322
IAVLR KA+EH+ +
Sbjct: 306 IAVLRAKAQEHSTKV 320
>gi|11056038 visual system homeobox 1 isoform a [Homo sapiens]
Length = 365
Score = 107 bits (268), Expect = 1e-23
Identities = 52/91 (57%), Positives = 62/91 (68%), Gaps = 1/91 (1%)
Query: 103 RMSPVKGMQEKGELDELGD-KCDSNVSSSKKRRHRTTFTSLQLEELEKVFQKTHYPDVYV 161
R V E + ++ D K + KKRRHRT FT+ QLEELEK F + HYPDVY
Sbjct: 134 RSDSVSTSDEDSQSEDRNDLKASPTLGKRKKRRHRTVFTAHQLEELEKAFSEAHYPDVYA 193
Query: 162 REQLALRTELTEARVQVWFQNRRAKWRKRER 192
RE LA++TEL E R+QVWFQNRRAKWRKRE+
Sbjct: 194 REMLAVKTELPEDRIQVWFQNRRAKWRKREK 224
>gi|4826912 paired-like homeodomain 3 [Homo sapiens]
Length = 302
Score = 104 bits (260), Expect = 9e-23
Identities = 56/119 (47%), Positives = 68/119 (57%)
Query: 112 EKGELDELGDKCDSNVSSSKKRRHRTTFTSLQLEELEKVFQKTHYPDVYVREQLALRTEL 171
EK G + K+RR RT FTS QL+ELE FQ+ YPD+ RE++A+ T L
Sbjct: 42 EKASASLPGGSPEDGSLKKKQRRQRTHFTSQQLQELEATFQRNRYPDMSTREEIAVWTNL 101
Query: 172 TEARVQVWFQNRRAKWRKRERYGQIQQAKSHFAATYDISVLPRTDSYPQIQNNLWAGNA 230
TEARV+VWF+NRRAKWRKRER Q + K FAA V P + YP W A
Sbjct: 102 TEARVRVWFKNRRAKWRKRERSQQAELCKGSFAAPLGGLVPPYEEVYPGYSYGNWPPKA 160
>gi|152963644 paired-like homeodomain transcription factor 1 [Homo
sapiens]
Length = 314
Score = 104 bits (260), Expect = 9e-23
Identities = 76/232 (32%), Positives = 111/232 (47%), Gaps = 21/232 (9%)
Query: 108 KGMQEKGELDELGDKCDSNVSSSKKRRHRTTFTSLQLEELEKVFQKTHYPDVYVREQLAL 167
KG ++ G D K+RR RT FTS QL+ELE FQ+ YPD+ +RE++A+
Sbjct: 65 KGPEDSGAGGTGCGGADDPAKKKKQRRQRTHFTSQQLQELEATFQRNRYPDMSMREEIAV 124
Query: 168 RTELTEARVQVWFQNRRAKWRKRERYGQIQQAKSHFAATYDISVLPRTDSYPQ-IQNNLW 226
T LTE RV+VWF+NRRAKWRKRER Q+ K + + V P D Y N W
Sbjct: 125 WTNLTEPRVRVWFKNRRAKWRKRERNQQLDLCKGGYVPQFSGLVQPYEDVYAAGYSYNNW 184
Query: 227 AGNASGGSVVT-------SCMLPRDTSSCMT-PYSHSPRTDSSYTGFS----------NH 268
A + + ++ + M P + S + P S S T S G N+
Sbjct: 185 AAKSLAPAPLSTKSFTFFNSMSPLSSQSMFSAPSSISSMTMPSSMGPGAVPGMPNSGLNN 244
Query: 269 QNQFSHVPLNNFFTDSLLTGATNGHAFETKPEFERRSSSIAVLRMKAKEHTA 320
N + LN+ + T + + +SS+A LR+K+K+H++
Sbjct: 245 INNLTGSSLNSAMSPGACPYGTPASPYSVYR--DTCNSSLASLRLKSKQHSS 294
>gi|4505619 paired box 7 isoform 1 [Homo sapiens]
Length = 520
Score = 104 bits (259), Expect = 1e-22
Identities = 86/271 (31%), Positives = 125/271 (46%), Gaps = 39/271 (14%)
Query: 64 RLERTSPCQDSSVNYGITKVEGQPLHTELNRAMDNCNSLRMSPVKGMQEKGELDE-LGDK 122
RL + C S+V G+ + L + + + + + + K +D LGDK
Sbjct: 136 RLLKDGHCDRSTVPSGLVSSISRVLRIKFGKKEEEDEADKKEDDGEKKAKHSIDGILGDK 195
Query: 123 CD-----SNVSSS-------KKRRHRTTFTSLQLEELEKVFQKTHYPDVYVREQLALRTE 170
+ S+V S K+RR RTTFT+ QLEELEK F++THYPD+Y RE+LA RT+
Sbjct: 196 GNRLDEGSDVESEPDLPLKRKQRRSRTTFTAEQLEELEKAFERTHYPDIYTREELAQRTK 255
Query: 171 LTEARVQVWFQNRRAKWRKRERYGQIQQAKSHFAATYDISVLPRTDSY--PQIQNNLWAG 228
LTEARVQVWF NRRA+WRK+ Q+ + + +P Y P
Sbjct: 256 LTEARVQVWFSNRRARWRKQAGANQLAAFNHLLPGGFPPTGMPTLPPYQLPDSTYPTTTI 315
Query: 229 NASGGSVV----------------TSCMLPRDTSSCM-TPYSHSPRTDS--SYTGFSNHQ 269
+ GGS V + DTSS +S S +DS + SNH
Sbjct: 316 SQDGGSTVHRPQPLPPSTMHQGGLAAAAAAADTSSAYGARHSFSSYSDSFMNPAAPSNHM 375
Query: 270 NQFSHVPLNNFFTDSLLTGATNGHAFETKPE 300
N P++N + +++ N A +P+
Sbjct: 376 N-----PVSNGLSPQVMSILGNPSAVPPQPQ 401
>gi|207029223 paired box 7 isoform 3 [Homo sapiens]
Length = 505
Score = 104 bits (259), Expect = 1e-22
Identities = 86/271 (31%), Positives = 125/271 (46%), Gaps = 39/271 (14%)
Query: 64 RLERTSPCQDSSVNYGITKVEGQPLHTELNRAMDNCNSLRMSPVKGMQEKGELDE-LGDK 122
RL + C S+V G+ + L + + + + + + K +D LGDK
Sbjct: 136 RLLKDGHCDRSTVPSGLVSSISRVLRIKFGKKEEEDEADKKEDDGEKKAKHSIDGILGDK 195
Query: 123 CD-----SNVSSS-------KKRRHRTTFTSLQLEELEKVFQKTHYPDVYVREQLALRTE 170
+ S+V S K+RR RTTFT+ QLEELEK F++THYPD+Y RE+LA RT+
Sbjct: 196 GNRLDEGSDVESEPDLPLKRKQRRSRTTFTAEQLEELEKAFERTHYPDIYTREELAQRTK 255
Query: 171 LTEARVQVWFQNRRAKWRKRERYGQIQQAKSHFAATYDISVLPRTDSY--PQIQNNLWAG 228
LTEARVQVWF NRRA+WRK+ Q+ + + +P Y P
Sbjct: 256 LTEARVQVWFSNRRARWRKQAGANQLAAFNHLLPGGFPPTGMPTLPPYQLPDSTYPTTTI 315
Query: 229 NASGGSVV----------------TSCMLPRDTSSCM-TPYSHSPRTDS--SYTGFSNHQ 269
+ GGS V + DTSS +S S +DS + SNH
Sbjct: 316 SQDGGSTVHRPQPLPPSTMHQGGLAAAAAAADTSSAYGARHSFSSYSDSFMNPAAPSNHM 375
Query: 270 NQFSHVPLNNFFTDSLLTGATNGHAFETKPE 300
N P++N + +++ N A +P+
Sbjct: 376 N-----PVSNGLSPQVMSILGNPSAVPPQPQ 401
>gi|239754062 PREDICTED: orthopedia homeobox [Homo sapiens]
Length = 325
Score = 104 bits (259), Expect = 1e-22
Identities = 83/225 (36%), Positives = 110/225 (48%), Gaps = 34/225 (15%)
Query: 131 KKRRHRTTFTSLQLEELEKVFQKTHYPDVYVREQLALRTELTEARVQVWFQNRRAKWRKR 190
K++RHRT FT QL ELE+ F KTHYPD+++RE+LALR LTE+RVQVWFQNRRAKW+KR
Sbjct: 103 KQKRHRTRFTPAQLNELERSFAKTHYPDIFMREELALRIGLTESRVQVWFQNRRAKWKKR 162
Query: 191 ERYGQIQQAKSHFAATYDISVLPRT---------DSYPQIQNN--LWAGNASGGSVVTSC 239
++ + +A T + P DS N WA A G V+
Sbjct: 163 KKTTNVFRAPGTLLPTPGLPQFPSAAAAAAAAMGDSLCSFHANDTRWAAAAMPG--VSQL 220
Query: 240 MLP----------RDTSSCMT---PYSHSPRTDSSYTGFSNHQNQFSHV--PLNNFFTDS 284
LP + S C P +S +S G SN SH+ P +
Sbjct: 221 PLPPALGRQQAMAQSLSQCSLAAGPPPNSMGLSNSLAG-SNGAGLQSHLYQPAFPGMVPA 279
Query: 285 LLTGATN---GHAFETKPEFER--RSSSIAVLRMKAKEHTANISW 324
L G +N + P+ R +SIA LR KA EHT ++S+
Sbjct: 280 SLPGPSNVSGSPQLCSSPDSSDVWRGTSIASLRRKALEHTVSMSF 324
>gi|14149760 orthopedia homeobox [Homo sapiens]
Length = 325
Score = 104 bits (259), Expect = 1e-22
Identities = 83/225 (36%), Positives = 110/225 (48%), Gaps = 34/225 (15%)
Query: 131 KKRRHRTTFTSLQLEELEKVFQKTHYPDVYVREQLALRTELTEARVQVWFQNRRAKWRKR 190
K++RHRT FT QL ELE+ F KTHYPD+++RE+LALR LTE+RVQVWFQNRRAKW+KR
Sbjct: 103 KQKRHRTRFTPAQLNELERSFAKTHYPDIFMREELALRIGLTESRVQVWFQNRRAKWKKR 162
Query: 191 ERYGQIQQAKSHFAATYDISVLPRT---------DSYPQIQNN--LWAGNASGGSVVTSC 239
++ + +A T + P DS N WA A G V+
Sbjct: 163 KKTTNVFRAPGTLLPTPGLPQFPSAAAAAAAAMGDSLCSFHANDTRWAAAAMPG--VSQL 220
Query: 240 MLP----------RDTSSCMT---PYSHSPRTDSSYTGFSNHQNQFSHV--PLNNFFTDS 284
LP + S C P +S +S G SN SH+ P +
Sbjct: 221 PLPPALGRQQAMAQSLSQCSLAAGPPPNSMGLSNSLAG-SNGAGLQSHLYQPAFPGMVPA 279
Query: 285 LLTGATN---GHAFETKPEFER--RSSSIAVLRMKAKEHTANISW 324
L G +N + P+ R +SIA LR KA EHT ++S+
Sbjct: 280 SLPGPSNVSGSPQLCSSPDSSDVWRGTSIASLRRKALEHTVSMSF 324
>gi|7524359 paired box 7 isoform 2 [Homo sapiens]
Length = 518
Score = 103 bits (256), Expect = 3e-22
Identities = 77/217 (35%), Positives = 107/217 (49%), Gaps = 35/217 (16%)
Query: 114 GELDELGDKCD--SNVSSS-------KKRRHRTTFTSLQLEELEKVFQKTHYPDVYVREQ 164
G L + G++ D S+V S K+RR RTTFT+ QLEELEK F++THYPD+Y RE+
Sbjct: 188 GILGDKGNRLDEGSDVESEPDLPLKRKQRRSRTTFTAEQLEELEKAFERTHYPDIYTREE 247
Query: 165 LALRTELTEARVQVWFQNRRAKWRKRERYGQIQQAKSHFAATYDISVLPRTDSY--PQIQ 222
LA RT+LTEARVQVWF NRRA+WRK+ Q+ + + +P Y P
Sbjct: 248 LAQRTKLTEARVQVWFSNRRARWRKQAGANQLAAFNHLLPGGFPPTGMPTLPPYQLPDST 307
Query: 223 NNLWAGNASGGSVV----------------TSCMLPRDTSSCM-TPYSHSPRTDS--SYT 263
+ GGS V + DTSS +S S +DS +
Sbjct: 308 YPTTTISQDGGSTVHRPQPLPPSTMHQGGLAAAAAAADTSSAYGARHSFSSYSDSFMNPA 367
Query: 264 GFSNHQNQFSHVPLNNFFTDSLLTGATNGHAFETKPE 300
SNH N P++N + +++ N A +P+
Sbjct: 368 APSNHMN-----PVSNGLSPQVMSILGNPSAVPPQPQ 399
>gi|12707580 paired-like homeobox 2b [Homo sapiens]
Length = 314
Score = 102 bits (253), Expect = 6e-22
Identities = 47/62 (75%), Positives = 57/62 (91%)
Query: 131 KKRRHRTTFTSLQLEELEKVFQKTHYPDVYVREQLALRTELTEARVQVWFQNRRAKWRKR 190
K+RR RTTFTS QL+ELE+VF +THYPD+Y RE+LAL+ +LTEARVQVWFQNRRAK+RK+
Sbjct: 97 KQRRIRTTFTSAQLKELERVFAETHYPDIYTREELALKIDLTEARVQVWFQNRRAKFRKQ 156
Query: 191 ER 192
ER
Sbjct: 157 ER 158
>gi|46249382 paired-like homeobox 2a [Homo sapiens]
Length = 284
Score = 102 bits (253), Expect = 6e-22
Identities = 47/62 (75%), Positives = 57/62 (91%)
Query: 131 KKRRHRTTFTSLQLEELEKVFQKTHYPDVYVREQLALRTELTEARVQVWFQNRRAKWRKR 190
K+RR RTTFTS QL+ELE+VF +THYPD+Y RE+LAL+ +LTEARVQVWFQNRRAK+RK+
Sbjct: 89 KQRRIRTTFTSAQLKELERVFAETHYPDIYTREELALKIDLTEARVQVWFQNRRAKFRKQ 148
Query: 191 ER 192
ER
Sbjct: 149 ER 150
>gi|188219638 paired box 3 isoform PAX3i [Homo sapiens]
Length = 483
Score = 100 bits (249), Expect = 2e-21
Identities = 46/88 (52%), Positives = 61/88 (69%)
Query: 131 KKRRHRTTFTSLQLEELEKVFQKTHYPDVYVREQLALRTELTEARVQVWFQNRRAKWRKR 190
K+RR RTTFT+ QLEELE+ F++THYPD+Y RE+LA R +LTEARVQVWF NRRA+WRK+
Sbjct: 217 KQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQVWFSNRRARWRKQ 276
Query: 191 ERYGQIQQAKSHFAATYDISVLPRTDSY 218
Q+ + + +P +Y
Sbjct: 277 AGANQLMAFNHLIPGGFPPTAMPTLPTY 304
>gi|31563348 paired box 3 isoform PAX3g [Homo sapiens]
Length = 403
Score = 100 bits (249), Expect = 2e-21
Identities = 46/88 (52%), Positives = 61/88 (69%)
Query: 131 KKRRHRTTFTSLQLEELEKVFQKTHYPDVYVREQLALRTELTEARVQVWFQNRRAKWRKR 190
K+RR RTTFT+ QLEELE+ F++THYPD+Y RE+LA R +LTEARVQVWF NRRA+WRK+
Sbjct: 218 KQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQVWFSNRRARWRKQ 277
Query: 191 ERYGQIQQAKSHFAATYDISVLPRTDSY 218
Q+ + + +P +Y
Sbjct: 278 AGANQLMAFNHLIPGGFPPTAMPTLPTY 305
>gi|31563346 paired box 3 isoform PAX3h [Homo sapiens]
Length = 407
Score = 100 bits (249), Expect = 2e-21
Identities = 46/88 (52%), Positives = 61/88 (69%)
Query: 131 KKRRHRTTFTSLQLEELEKVFQKTHYPDVYVREQLALRTELTEARVQVWFQNRRAKWRKR 190
K+RR RTTFT+ QLEELE+ F++THYPD+Y RE+LA R +LTEARVQVWF NRRA+WRK+
Sbjct: 218 KQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQVWFSNRRARWRKQ 277
Query: 191 ERYGQIQQAKSHFAATYDISVLPRTDSY 218
Q+ + + +P +Y
Sbjct: 278 AGANQLMAFNHLIPGGFPPTAMPTLPTY 305
>gi|31563344 paired box 3 isoform PAX3e [Homo sapiens]
Length = 505
Score = 100 bits (249), Expect = 2e-21
Identities = 46/88 (52%), Positives = 61/88 (69%)
Query: 131 KKRRHRTTFTSLQLEELEKVFQKTHYPDVYVREQLALRTELTEARVQVWFQNRRAKWRKR 190
K+RR RTTFT+ QLEELE+ F++THYPD+Y RE+LA R +LTEARVQVWF NRRA+WRK+
Sbjct: 218 KQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQVWFSNRRARWRKQ 277
Query: 191 ERYGQIQQAKSHFAATYDISVLPRTDSY 218
Q+ + + +P +Y
Sbjct: 278 AGANQLMAFNHLIPGGFPPTAMPTLPTY 305
>gi|31563342 paired box 3 isoform PAX3d [Homo sapiens]
Length = 484
Score = 100 bits (249), Expect = 2e-21
Identities = 46/88 (52%), Positives = 61/88 (69%)
Query: 131 KKRRHRTTFTSLQLEELEKVFQKTHYPDVYVREQLALRTELTEARVQVWFQNRRAKWRKR 190
K+RR RTTFT+ QLEELE+ F++THYPD+Y RE+LA R +LTEARVQVWF NRRA+WRK+
Sbjct: 218 KQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQVWFSNRRARWRKQ 277
Query: 191 ERYGQIQQAKSHFAATYDISVLPRTDSY 218
Q+ + + +P +Y
Sbjct: 278 AGANQLMAFNHLIPGGFPPTAMPTLPTY 305
>gi|31563340 paired box 3 isoform PAX3 [Homo sapiens]
Length = 479
Score = 100 bits (249), Expect = 2e-21
Identities = 46/88 (52%), Positives = 61/88 (69%)
Query: 131 KKRRHRTTFTSLQLEELEKVFQKTHYPDVYVREQLALRTELTEARVQVWFQNRRAKWRKR 190
K+RR RTTFT+ QLEELE+ F++THYPD+Y RE+LA R +LTEARVQVWF NRRA+WRK+
Sbjct: 218 KQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQVWFSNRRARWRKQ 277
Query: 191 ERYGQIQQAKSHFAATYDISVLPRTDSY 218
Q+ + + +P +Y
Sbjct: 278 AGANQLMAFNHLIPGGFPPTAMPTLPTY 305
>gi|122937321 UNC homeobox [Homo sapiens]
Length = 531
Score = 100 bits (248), Expect = 2e-21
Identities = 50/85 (58%), Positives = 61/85 (71%), Gaps = 1/85 (1%)
Query: 107 VKGMQEKGELDELGDKCDSNVSSSKKRRHRTTFTSLQLEELEKVFQKTHYPDVYVREQLA 166
V G + +L + GD D K+RR RT FT QLEELEK F ++HYPDV++RE LA
Sbjct: 81 VGGDGQPFKLSDSGDP-DKESPGCKRRRTRTNFTGWQLEELEKAFNESHYPDVFMREALA 139
Query: 167 LRTELTEARVQVWFQNRRAKWRKRE 191
LR +L E+RVQVWFQNRRAKWRK+E
Sbjct: 140 LRLDLVESRVQVWFQNRRAKWRKKE 164
>gi|122937484 dorsal root ganglia homeobox [Homo sapiens]
Length = 268
Score = 100 bits (248), Expect = 2e-21
Identities = 48/75 (64%), Positives = 56/75 (74%)
Query: 124 DSNVSSSKKRRHRTTFTSLQLEELEKVFQKTHYPDVYVREQLALRTELTEARVQVWFQNR 183
D K+RR+RTTFT QLE LE VF +THYPDV+ RE+LA++ LTEARVQVWFQNR
Sbjct: 30 DDGFLRRKQRRNRTTFTLQQLEALEAVFAQTHYPDVFTREELAMKINLTEARVQVWFQNR 89
Query: 184 RAKWRKRERYGQIQQ 198
RAKWRK ER Q+
Sbjct: 90 RAKWRKTERGASDQE 104
>gi|126116581 retina and anterior neural fold homeobox [Homo
sapiens]
Length = 346
Score = 98.6 bits (244), Expect = 7e-21
Identities = 77/207 (37%), Positives = 101/207 (48%), Gaps = 25/207 (12%)
Query: 131 KKRRHRTTFTSLQLEELEKVFQKTHYPDVYVREQLALRTELTEARVQVWFQNRRAKWRKR 190
K RR+RTTFT+ QL ELE+ F+K+HYPDVY RE+LA + L E RVQVWFQNRRAKWR++
Sbjct: 135 KHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAGKVNLPEVRVQVWFQNRRAKWRRQ 194
Query: 191 ERYGQIQQAKSHFAATYDISVLPRTDSYPQIQNNLWAGNASGGSVVTSCM---------L 241
E+ ++ K + S P + + + L AG SGG + L
Sbjct: 195 EKL-EVSSMKLQDSPLLSFSRSPPSATL----SPLGAGPGSGGGPAGGALPLESWLGPPL 249
Query: 242 PRDTSSCMTPY-SHSPRTDS---SYTGFSNHQNQFSHVPLNNFF------TDSLLTGATN 291
P ++ + P S SYT + PL S G
Sbjct: 250 PGGGATALQSLPGFGPPAQSLPASYTPPPPPPPFLNSPPLGPGLQPLAPPPPSYPCGPGF 309
Query: 292 GHAFETKPEFERRSSSIAVLRMKAKEH 318
G F E + R+SSIA LR+KAKEH
Sbjct: 310 GDKFPL-DEADPRNSSIAALRLKAKEH 335
>gi|57232759 intestine-specific homeobox [Homo sapiens]
Length = 245
Score = 97.4 bits (241), Expect = 1e-20
Identities = 44/65 (67%), Positives = 53/65 (81%)
Query: 132 KRRHRTTFTSLQLEELEKVFQKTHYPDVYVREQLALRTELTEARVQVWFQNRRAKWRKRE 191
KRR RTTFT+ QL ELEK+F THYPDV++R QLA R L EARVQ+WFQN+RAKWRK+E
Sbjct: 82 KRRVRTTFTTEQLHELEKIFHFTHYPDVHIRSQLAARINLPEARVQIWFQNQRAKWRKQE 141
Query: 192 RYGQI 196
+ G +
Sbjct: 142 KIGNL 146
>gi|5902024 paired mesoderm homeobox 1 isoform pmx-1a [Homo sapiens]
Length = 217
Score = 95.9 bits (237), Expect = 4e-20
Identities = 44/62 (70%), Positives = 53/62 (85%)
Query: 131 KKRRHRTTFTSLQLEELEKVFQKTHYPDVYVREQLALRTELTEARVQVWFQNRRAKWRKR 190
K+RR+RTTF S QL+ LE+VF++THYPD +VRE LA R LTEARVQVWFQNRRAK+R+
Sbjct: 93 KQRRNRTTFNSSQLQALERVFERTHYPDAFVREDLARRVNLTEARVQVWFQNRRAKFRRN 152
Query: 191 ER 192
ER
Sbjct: 153 ER 154
>gi|12707577 paired mesoderm homeobox 1 isoform pmx-1b [Homo
sapiens]
Length = 245
Score = 95.9 bits (237), Expect = 4e-20
Identities = 44/62 (70%), Positives = 53/62 (85%)
Query: 131 KKRRHRTTFTSLQLEELEKVFQKTHYPDVYVREQLALRTELTEARVQVWFQNRRAKWRKR 190
K+RR+RTTF S QL+ LE+VF++THYPD +VRE LA R LTEARVQVWFQNRRAK+R+
Sbjct: 93 KQRRNRTTFNSSQLQALERVFERTHYPDAFVREDLARRVNLTEARVQVWFQNRRAKFRRN 152
Query: 191 ER 192
ER
Sbjct: 153 ER 154
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.128 0.379
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,661,895
Number of Sequences: 37866
Number of extensions: 552866
Number of successful extensions: 1918
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 282
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 1540
Number of HSP's gapped (non-prelim): 399
length of query: 326
length of database: 18,247,518
effective HSP length: 103
effective length of query: 223
effective length of database: 14,347,320
effective search space: 3199452360
effective search space used: 3199452360
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.