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Search of human proteins with 154800437
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|154800437 endothelin 1 [Homo sapiens]
(212 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|154800437 endothelin 1 [Homo sapiens] 451 e-127
gi|4503463 endothelin 2 preproprotein [Homo sapiens] 95 5e-20
gi|46370064 endothelin 3 isoform 1 preproprotein [Homo sapiens] 89 4e-18
gi|46370060 endothelin 3 isoform 2 preproprotein [Homo sapiens] 89 4e-18
gi|4557545 endothelin 3 isoform 1 preproprotein [Homo sapiens] 89 4e-18
gi|46370062 endothelin 3 isoform 3 preproprotein [Homo sapiens] 87 1e-17
gi|226246529 myotubularin related protein 15 isoform b [Homo sap... 35 0.036
gi|226246527 myotubularin related protein 15 isoform b [Homo sap... 35 0.036
gi|226246525 myotubularin related protein 15 isoform b [Homo sap... 35 0.036
gi|226246523 myotubularin related protein 15 isoform a [Homo sap... 35 0.036
gi|81295816 nasopharyngeal epithelium specific protein 1 [Homo s... 32 0.30
gi|112293277 DnaJ (Hsp40) homolog, subfamily C, member 8 [Homo s... 32 0.40
gi|8923271 coiled-coil domain containing 49 [Homo sapiens] 31 0.68
gi|115334675 hypothetical protein LOC90268 [Homo sapiens] 31 0.89
gi|14670392 bromodomain adjacent to zinc finger domain, 1B [Homo... 30 1.2
gi|5453958 protein phosphatase 5, catalytic subunit [Homo sapiens] 29 3.4
gi|239756241 PREDICTED: golgi autoantigen, golgin subfamily a-li... 28 4.4
gi|148368962 NKF3 kinase family member [Homo sapiens] 28 4.4
gi|110349763 cytohesin 1 isoform 2 [Homo sapiens] 28 4.4
gi|4758964 cytohesin 1 isoform 1 [Homo sapiens] 28 4.4
gi|38373673 synaptonemal complex protein 2 [Homo sapiens] 28 4.4
gi|4505243 myelin protein zero [Homo sapiens] 28 5.7
gi|14165425 protocadherin alpha 9 isoform 1 precursor [Homo sapi... 28 5.7
gi|195972859 cytohesin 2 isoform 2 [Homo sapiens] 28 7.5
gi|8670546 cytohesin 2 isoform 1 [Homo sapiens] 28 7.5
gi|215820619 zinc finger protein 646 [Homo sapiens] 28 7.5
gi|14196455 protocadherin gamma subfamily A, 11 isoform 3 precur... 27 9.8
gi|31542760 hypothetical protein LOC220108 [Homo sapiens] 27 9.8
>gi|154800437 endothelin 1 [Homo sapiens]
Length = 212
Score = 451 bits (1159), Expect = e-127
Identities = 212/212 (100%), Positives = 212/212 (100%)
Query: 1 MDYLLMIFSLLFVACQGAPETAVLGAELSAVGENGGEKPTPSPPWRLRRSKRCSCSSLMD 60
MDYLLMIFSLLFVACQGAPETAVLGAELSAVGENGGEKPTPSPPWRLRRSKRCSCSSLMD
Sbjct: 1 MDYLLMIFSLLFVACQGAPETAVLGAELSAVGENGGEKPTPSPPWRLRRSKRCSCSSLMD 60
Query: 61 KECVYFCHLDIIWVNTPEHVVPYGLGSPRSKRALENLLPTKATDRENRCQCASQKDKKCW 120
KECVYFCHLDIIWVNTPEHVVPYGLGSPRSKRALENLLPTKATDRENRCQCASQKDKKCW
Sbjct: 61 KECVYFCHLDIIWVNTPEHVVPYGLGSPRSKRALENLLPTKATDRENRCQCASQKDKKCW 120
Query: 121 NFCQAGKELRAEDIMEKDWNNHKKGKDCSKLGKKCIYQQLVRGRKIRRSSEEHLRQTRSE 180
NFCQAGKELRAEDIMEKDWNNHKKGKDCSKLGKKCIYQQLVRGRKIRRSSEEHLRQTRSE
Sbjct: 121 NFCQAGKELRAEDIMEKDWNNHKKGKDCSKLGKKCIYQQLVRGRKIRRSSEEHLRQTRSE 180
Query: 181 TMRNSVKSSFHDPKLKGKPSRERYVTHNRAHW 212
TMRNSVKSSFHDPKLKGKPSRERYVTHNRAHW
Sbjct: 181 TMRNSVKSSFHDPKLKGKPSRERYVTHNRAHW 212
>gi|4503463 endothelin 2 preproprotein [Homo sapiens]
Length = 178
Score = 94.7 bits (234), Expect = 5e-20
Identities = 44/75 (58%), Positives = 50/75 (66%), Gaps = 9/75 (12%)
Query: 49 RSKRCSCSSLMDKECVYFCHLDIIWVNTPEHVVPYGLGSPRSKRALENLLPTKATDRENR 108
R +RCSCSS +DKECVYFCHLDIIWVNTPE PYGLG+P +R LP R
Sbjct: 45 RLRRCSCSSWLDKECVYFCHLDIIWVNTPEQTAPYGLGNPPRRR--RRSLP-------RR 95
Query: 109 CQCASQKDKKCWNFC 123
CQC+S +D C FC
Sbjct: 96 CQCSSARDPACATFC 110
>gi|46370064 endothelin 3 isoform 1 preproprotein [Homo sapiens]
Length = 238
Score = 88.6 bits (218), Expect = 4e-18
Identities = 51/145 (35%), Positives = 70/145 (48%), Gaps = 15/145 (10%)
Query: 17 GAPETAVLGAELSAVGENGGEKPTPSPPWRLR---------RSKRCSCSSLMDKECVYFC 67
G E V G V + P+P P + + RS+RC+C + DKECVY+C
Sbjct: 52 GPGEETVAGPGEGTVAPTALQGPSPGSPGQEQAAEGAPEHHRSRRCTCFTYKDKECVYYC 111
Query: 68 HLDIIWVNTPEHVVPYGL----GSPRSKRALENLLPTKATDREN--RCQCASQKDKKCWN 121
HLDIIW+NTPE VPYGL GS R KR+ L RC C + DK C +
Sbjct: 112 HLDIIWINTPEQTVPYGLSNYRGSFRGKRSAGPLPGNLQLSHRPHLRCACVGRYDKACLH 171
Query: 122 FCQAGKELRAEDIMEKDWNNHKKGK 146
FC ++ + + + ++GK
Sbjct: 172 FCTQTLDVSSNSRTAEKTDKEEEGK 196
>gi|46370060 endothelin 3 isoform 2 preproprotein [Homo sapiens]
Length = 219
Score = 88.6 bits (218), Expect = 4e-18
Identities = 51/145 (35%), Positives = 70/145 (48%), Gaps = 15/145 (10%)
Query: 17 GAPETAVLGAELSAVGENGGEKPTPSPPWRLR---------RSKRCSCSSLMDKECVYFC 67
G E V G V + P+P P + + RS+RC+C + DKECVY+C
Sbjct: 52 GPGEETVAGPGEGTVAPTALQGPSPGSPGQEQAAEGAPEHHRSRRCTCFTYKDKECVYYC 111
Query: 68 HLDIIWVNTPEHVVPYGL----GSPRSKRALENLLPTKATDREN--RCQCASQKDKKCWN 121
HLDIIW+NTPE VPYGL GS R KR+ L RC C + DK C +
Sbjct: 112 HLDIIWINTPEQTVPYGLSNYRGSFRGKRSAGPLPGNLQLSHRPHLRCACVGRYDKACLH 171
Query: 122 FCQAGKELRAEDIMEKDWNNHKKGK 146
FC ++ + + + ++GK
Sbjct: 172 FCTQTLDVSSNSRTAEKTDKEEEGK 196
>gi|4557545 endothelin 3 isoform 1 preproprotein [Homo sapiens]
Length = 238
Score = 88.6 bits (218), Expect = 4e-18
Identities = 51/145 (35%), Positives = 70/145 (48%), Gaps = 15/145 (10%)
Query: 17 GAPETAVLGAELSAVGENGGEKPTPSPPWRLR---------RSKRCSCSSLMDKECVYFC 67
G E V G V + P+P P + + RS+RC+C + DKECVY+C
Sbjct: 52 GPGEETVAGPGEGTVAPTALQGPSPGSPGQEQAAEGAPEHHRSRRCTCFTYKDKECVYYC 111
Query: 68 HLDIIWVNTPEHVVPYGL----GSPRSKRALENLLPTKATDREN--RCQCASQKDKKCWN 121
HLDIIW+NTPE VPYGL GS R KR+ L RC C + DK C +
Sbjct: 112 HLDIIWINTPEQTVPYGLSNYRGSFRGKRSAGPLPGNLQLSHRPHLRCACVGRYDKACLH 171
Query: 122 FCQAGKELRAEDIMEKDWNNHKKGK 146
FC ++ + + + ++GK
Sbjct: 172 FCTQTLDVSSNSRTAEKTDKEEEGK 196
>gi|46370062 endothelin 3 isoform 3 preproprotein [Homo sapiens]
Length = 224
Score = 87.0 bits (214), Expect = 1e-17
Identities = 49/122 (40%), Positives = 61/122 (50%), Gaps = 15/122 (12%)
Query: 17 GAPETAVLGAELSAVGENGGEKPTPSPPWRLR---------RSKRCSCSSLMDKECVYFC 67
G E V G V + P+P P + + RS+RC+C + DKECVY+C
Sbjct: 52 GPGEETVAGPGEGTVAPTALQGPSPGSPGQEQAAEGAPEHHRSRRCTCFTYKDKECVYYC 111
Query: 68 HLDIIWVNTPEHVVPYGL----GSPRSKRALENLLPTKATDREN--RCQCASQKDKKCWN 121
HLDIIW+NTPE VPYGL GS R KR+ L RC C + DK C +
Sbjct: 112 HLDIIWINTPEQTVPYGLSNYRGSFRGKRSAGPLPGNLQLSHRPHLRCACVGRYDKACLH 171
Query: 122 FC 123
FC
Sbjct: 172 FC 173
>gi|226246529 myotubularin related protein 15 isoform b [Homo
sapiens]
Length = 533
Score = 35.4 bits (80), Expect = 0.036
Identities = 44/193 (22%), Positives = 80/193 (41%), Gaps = 29/193 (15%)
Query: 39 PTPSPPWRLRRSKRCSCSS---LMDKECVYFCHLDIIWVNTPE----HVVPYGLGSPRSK 91
P SPP + + S S+ + K YF D++ N E V LGS SK
Sbjct: 99 PKKSPPPKTNLTPGQSDSAKREVKQKISPYFKSNDVVCKNQDELRNRSVKVICLGSLASK 158
Query: 92 RALENLLPTKATDRENRCQCASQKDKKCW---NFCQAGKELRAEDIMEKDWNNHKKGKDC 148
+ + + K+ D++ +S + K + E+ ED + ++ + + C
Sbjct: 159 LSRKYVKAKKSIDKDEEFAGSSPQSSKSTVVKSLIDNSSEIEDEDQILENSSQKENVFKC 218
Query: 149 SKLGKKCIYQQLVRGRKIRRS-SEEHLRQTRSE------------------TMRNSVKSS 189
L ++CI + +VRG KI + S++ R+ T+RN++KS+
Sbjct: 219 DSLKEECIPEHMVRGSKIMEAESQKATRECEKSALTPGFSDNAIMLFSPDFTLRNTLKST 278
Query: 190 FHDPKLKGKPSRE 202
D +K + +E
Sbjct: 279 SEDSLVKQECIKE 291
>gi|226246527 myotubularin related protein 15 isoform b [Homo
sapiens]
Length = 533
Score = 35.4 bits (80), Expect = 0.036
Identities = 44/193 (22%), Positives = 80/193 (41%), Gaps = 29/193 (15%)
Query: 39 PTPSPPWRLRRSKRCSCSS---LMDKECVYFCHLDIIWVNTPE----HVVPYGLGSPRSK 91
P SPP + + S S+ + K YF D++ N E V LGS SK
Sbjct: 99 PKKSPPPKTNLTPGQSDSAKREVKQKISPYFKSNDVVCKNQDELRNRSVKVICLGSLASK 158
Query: 92 RALENLLPTKATDRENRCQCASQKDKKCW---NFCQAGKELRAEDIMEKDWNNHKKGKDC 148
+ + + K+ D++ +S + K + E+ ED + ++ + + C
Sbjct: 159 LSRKYVKAKKSIDKDEEFAGSSPQSSKSTVVKSLIDNSSEIEDEDQILENSSQKENVFKC 218
Query: 149 SKLGKKCIYQQLVRGRKIRRS-SEEHLRQTRSE------------------TMRNSVKSS 189
L ++CI + +VRG KI + S++ R+ T+RN++KS+
Sbjct: 219 DSLKEECIPEHMVRGSKIMEAESQKATRECEKSALTPGFSDNAIMLFSPDFTLRNTLKST 278
Query: 190 FHDPKLKGKPSRE 202
D +K + +E
Sbjct: 279 SEDSLVKQECIKE 291
>gi|226246525 myotubularin related protein 15 isoform b [Homo
sapiens]
Length = 533
Score = 35.4 bits (80), Expect = 0.036
Identities = 44/193 (22%), Positives = 80/193 (41%), Gaps = 29/193 (15%)
Query: 39 PTPSPPWRLRRSKRCSCSS---LMDKECVYFCHLDIIWVNTPE----HVVPYGLGSPRSK 91
P SPP + + S S+ + K YF D++ N E V LGS SK
Sbjct: 99 PKKSPPPKTNLTPGQSDSAKREVKQKISPYFKSNDVVCKNQDELRNRSVKVICLGSLASK 158
Query: 92 RALENLLPTKATDRENRCQCASQKDKKCW---NFCQAGKELRAEDIMEKDWNNHKKGKDC 148
+ + + K+ D++ +S + K + E+ ED + ++ + + C
Sbjct: 159 LSRKYVKAKKSIDKDEEFAGSSPQSSKSTVVKSLIDNSSEIEDEDQILENSSQKENVFKC 218
Query: 149 SKLGKKCIYQQLVRGRKIRRS-SEEHLRQTRSE------------------TMRNSVKSS 189
L ++CI + +VRG KI + S++ R+ T+RN++KS+
Sbjct: 219 DSLKEECIPEHMVRGSKIMEAESQKATRECEKSALTPGFSDNAIMLFSPDFTLRNTLKST 278
Query: 190 FHDPKLKGKPSRE 202
D +K + +E
Sbjct: 279 SEDSLVKQECIKE 291
>gi|226246523 myotubularin related protein 15 isoform a [Homo
sapiens]
Length = 1017
Score = 35.4 bits (80), Expect = 0.036
Identities = 44/193 (22%), Positives = 80/193 (41%), Gaps = 29/193 (15%)
Query: 39 PTPSPPWRLRRSKRCSCSS---LMDKECVYFCHLDIIWVNTPE----HVVPYGLGSPRSK 91
P SPP + + S S+ + K YF D++ N E V LGS SK
Sbjct: 99 PKKSPPPKTNLTPGQSDSAKREVKQKISPYFKSNDVVCKNQDELRNRSVKVICLGSLASK 158
Query: 92 RALENLLPTKATDRENRCQCASQKDKKCW---NFCQAGKELRAEDIMEKDWNNHKKGKDC 148
+ + + K+ D++ +S + K + E+ ED + ++ + + C
Sbjct: 159 LSRKYVKAKKSIDKDEEFAGSSPQSSKSTVVKSLIDNSSEIEDEDQILENSSQKENVFKC 218
Query: 149 SKLGKKCIYQQLVRGRKIRRS-SEEHLRQTRSE------------------TMRNSVKSS 189
L ++CI + +VRG KI + S++ R+ T+RN++KS+
Sbjct: 219 DSLKEECIPEHMVRGSKIMEAESQKATRECEKSALTPGFSDNAIMLFSPDFTLRNTLKST 278
Query: 190 FHDPKLKGKPSRE 202
D +K + +E
Sbjct: 279 SEDSLVKQECIKE 291
>gi|81295816 nasopharyngeal epithelium specific protein 1 [Homo
sapiens]
Length = 551
Score = 32.3 bits (72), Expect = 0.30
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Query: 136 EKDWNNHKKGKDCSKLGKKCIYQQLVRGRKIRRSSEEHLRQTRSETMRNSVKSSFHDPKL 195
E WNN+KK D ++ K+ L R K+R EE L+ S+ + N+ + D ++
Sbjct: 153 EMVWNNNKKLSDLEEVAKERAQNLLQRANKLRMEQEEELKD-MSKIILNAKCHAIRDAQI 211
Query: 196 KGK 198
K
Sbjct: 212 LEK 214
>gi|112293277 DnaJ (Hsp40) homolog, subfamily C, member 8 [Homo
sapiens]
Length = 253
Score = 32.0 bits (71), Expect = 0.40
Identities = 24/93 (25%), Positives = 43/93 (46%), Gaps = 13/93 (13%)
Query: 101 KATDRENRCQCASQKDKKCWNFCQAGKELRAEDIMEKDWNNHKKGK------DCSKLGKK 154
+A D+ + ++ K+ + QAGKE + E+ K+GK D +L K+
Sbjct: 101 EAVDKAYKLLLDQEQKKRALDVIQAGKEYVEHTVKERKKQLKKEGKPTIVEEDDPELFKQ 160
Query: 155 CIYQQLVR-------GRKIRRSSEEHLRQTRSE 180
+Y+Q ++ RK R + E H R+ + E
Sbjct: 161 AVYKQTMKLFAELEIKRKEREAKEMHERKRQRE 193
>gi|8923271 coiled-coil domain containing 49 [Homo sapiens]
Length = 425
Score = 31.2 bits (69), Expect = 0.68
Identities = 25/110 (22%), Positives = 46/110 (41%), Gaps = 2/110 (1%)
Query: 76 TPEHVVPYGLGSPRSKRALENLLPTKATDRENRCQCASQKDKKCWNFCQAGKELRAEDIM 135
T E +G+ + R+ + P A+ + R A +D++ + + + R +
Sbjct: 245 TAEQKRGHGMKNHSRSRSSSHSPPRHASKKSTRE--AGSRDRRSRSLGRRSRSPRPSKLH 302
Query: 136 EKDWNNHKKGKDCSKLGKKCIYQQLVRGRKIRRSSEEHLRQTRSETMRNS 185
N + G+ S KK +YQ+ R+ S E L + R E M N+
Sbjct: 303 NSKVNRRETGQTRSPSPKKEVYQRRHAPGYTRKLSAEELERKRQEMMENA 352
>gi|115334675 hypothetical protein LOC90268 [Homo sapiens]
Length = 352
Score = 30.8 bits (68), Expect = 0.89
Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
Query: 128 ELRAEDIMEKDWNNHKKGKDCSKLGKKCIYQQLVRGRKIRRSSEEHLRQTRSETMRNSV- 186
E+ D +K+W + + C K+G + + Q+ R++R + LR T + M +V
Sbjct: 85 EMDIMDYCKKEWRGNTQKATCMKMGYEEVSQKFTSIRRVRGDNYCALRATLFQAMSQAVG 144
Query: 187 -KSSFHDPKLKGKPSR 201
DP+L P +
Sbjct: 145 LPPWLQDPELMLLPEK 160
>gi|14670392 bromodomain adjacent to zinc finger domain, 1B [Homo
sapiens]
Length = 1483
Score = 30.4 bits (67), Expect = 1.2
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 161 VRGRKIRRSSEEHLRQTRSETMRNSVKSSFHDPKLKGKPSRE 202
V+ K +S EEHL + N + ++FH PK KG P+++
Sbjct: 353 VKNSKNSKSPEEHLEEMMKMMSPNKLHTNFHIPK-KGPPAKK 393
>gi|5453958 protein phosphatase 5, catalytic subunit [Homo sapiens]
Length = 499
Score = 28.9 bits (63), Expect = 3.4
Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 8/63 (12%)
Query: 146 KDCSKLGKKCIYQQLVRGR----KIRRSSEEHLRQTRSETMRNSVKSSFHDP----KLKG 197
KD KL +KC YQ LV+ + K+ E L++T T+ F+D +L G
Sbjct: 199 KDQKKLHRKCAYQILVQVKEVLSKLSTLVETTLKETEKITVCGDTHGQFYDLLNIFELNG 258
Query: 198 KPS 200
PS
Sbjct: 259 LPS 261
>gi|239756241 PREDICTED: golgi autoantigen, golgin subfamily a-like
[Homo sapiens]
Length = 899
Score = 28.5 bits (62), Expect = 4.4
Identities = 16/83 (19%), Positives = 35/83 (42%)
Query: 114 QKDKKCWNFCQAGKELRAEDIMEKDWNNHKKGKDCSKLGKKCIYQQLVRGRKIRRSSEEH 173
++ +K W + ++ + ++ EK W K K + KK Q+ +R + R E+
Sbjct: 662 EQKEKLWEHEKMQEQEKMQEQEEKIWEQEKMEKKTQEQEKKTWDQEKMREEESMREREKK 721
Query: 174 LRQTRSETMRNSVKSSFHDPKLK 196
+R+ K + K++
Sbjct: 722 MREEEEMMREQEEKMQEQEEKMQ 744
>gi|148368962 NKF3 kinase family member [Homo sapiens]
Length = 1746
Score = 28.5 bits (62), Expect = 4.4
Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 6/83 (7%)
Query: 80 VVPYGLGSPRSKRALENLLPTKATDRENRCQCASQKDKK-CWNFCQAGKELRAEDIMEKD 138
VV YG GS +S + ++ P + E+R + AS +K C G ++D+ E +
Sbjct: 325 VVSYGQGSIQSMVSSDSTSPDSSLTEESRSETASSLSQKICNGGLSPGNPGDSKDMKEIE 384
Query: 139 WN-----NHKKGKDCSKLGKKCI 156
N ++ + KD S+ K I
Sbjct: 385 PNYESPSSNNQDKDSSQASKSSI 407
>gi|110349763 cytohesin 1 isoform 2 [Homo sapiens]
Length = 397
Score = 28.5 bits (62), Expect = 4.4
Identities = 10/24 (41%), Positives = 17/24 (70%)
Query: 186 VKSSFHDPKLKGKPSRERYVTHNR 209
+ +S H+P +K KP+ ER++ NR
Sbjct: 196 LNTSLHNPNVKDKPTVERFIAMNR 219
>gi|4758964 cytohesin 1 isoform 1 [Homo sapiens]
Length = 398
Score = 28.5 bits (62), Expect = 4.4
Identities = 10/24 (41%), Positives = 17/24 (70%)
Query: 186 VKSSFHDPKLKGKPSRERYVTHNR 209
+ +S H+P +K KP+ ER++ NR
Sbjct: 196 LNTSLHNPNVKDKPTVERFIAMNR 219
>gi|38373673 synaptonemal complex protein 2 [Homo sapiens]
Length = 1530
Score = 28.5 bits (62), Expect = 4.4
Identities = 23/107 (21%), Positives = 41/107 (38%), Gaps = 1/107 (0%)
Query: 103 TDRENRCQCASQKDKKCWNFCQAGKELRAEDIMEKDWNNHKKGKDCSKLGKKCIYQQLVR 162
+D E +C K W K + K+ NHK GK S L K ++
Sbjct: 936 SDTETEYRCDDSKTDISWLREPKSKPQLIDYSRNKNVKNHKSGKSRSSLEKGQPSSKMTP 995
Query: 163 GRKIRRSSEEHLRQTRSETMRNSVKSSFHDPKLKGKPSR-ERYVTHN 208
+ I + ++ + + R R + K+ + L S E+ +H+
Sbjct: 996 SKNITKKMDKTIPEGRIRLPRKATKTKKNYKDLSNSESECEQEFSHS 1042
>gi|4505243 myelin protein zero [Homo sapiens]
Length = 258
Score = 28.1 bits (61), Expect = 5.7
Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
Query: 119 CWNFCQAGKELRAEDIMEKDWNNHKKGKDCSKLGKK--CIYQQLVRGRKIRRSSEE 172
CW QA + R MEK HK GKD SK G++ +Y L R + SE+
Sbjct: 192 CWLRRQAALQRRLS-AMEKG-KLHKPGKDASKRGRQTPVLYAMLDHSRSTKAVSEK 245
>gi|14165425 protocadherin alpha 9 isoform 1 precursor [Homo
sapiens]
Length = 950
Score = 28.1 bits (61), Expect = 5.7
Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 3/58 (5%)
Query: 5 LMIFSLLFVACQGAPETAVLGAELSAVGENGGEKPTPSPPWRLRRSKRCSCSSLMDKE 62
LM FS C G+ E E SA ++ G+ P+P WR S R S + E
Sbjct: 769 LMAFSPGLSPCAGSTERT---GEPSASSDSTGKPRQPNPDWRYSASLRAGMHSSVHLE 823
>gi|195972859 cytohesin 2 isoform 2 [Homo sapiens]
Length = 399
Score = 27.7 bits (60), Expect = 7.5
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 186 VKSSFHDPKLKGKPSRERYVTHNR 209
+ +S H+P ++ KP ER+V NR
Sbjct: 195 LNTSLHNPNVRDKPGLERFVAMNR 218
>gi|8670546 cytohesin 2 isoform 1 [Homo sapiens]
Length = 400
Score = 27.7 bits (60), Expect = 7.5
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 186 VKSSFHDPKLKGKPSRERYVTHNR 209
+ +S H+P ++ KP ER+V NR
Sbjct: 195 LNTSLHNPNVRDKPGLERFVAMNR 218
>gi|215820619 zinc finger protein 646 [Homo sapiens]
Length = 1832
Score = 27.7 bits (60), Expect = 7.5
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 29 SAVGENGGEKPTPSPPWRLRRSKRCS 54
S V GG++PT SPP R +CS
Sbjct: 217 SVVNFTGGQEPTQSPPAEEERRYKCS 242
>gi|14196455 protocadherin gamma subfamily A, 11 isoform 3 precursor
[Homo sapiens]
Length = 750
Score = 27.3 bits (59), Expect = 9.8
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 28 LSAVGENGGEKPTPSPPWRLRRSKR 52
L AVGE+ GE+ P+ WR +++R
Sbjct: 617 LFAVGEHTGEQAPPNTDWRFSQAQR 641
>gi|31542760 hypothetical protein LOC220108 [Homo sapiens]
Length = 582
Score = 27.3 bits (59), Expect = 9.8
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 35 GGEKPTPSPPWRLRRSKRCSC 55
G TP+PPW +RSK C
Sbjct: 381 GRANSTPNPPWSFQRSKSLFC 401
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.133 0.425
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,256,532
Number of Sequences: 37866
Number of extensions: 430284
Number of successful extensions: 1327
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1291
Number of HSP's gapped (non-prelim): 29
length of query: 212
length of database: 18,247,518
effective HSP length: 98
effective length of query: 114
effective length of database: 14,536,650
effective search space: 1657178100
effective search space used: 1657178100
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.