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Search of human proteins with 15451750
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15451750 chorionic gonadotropin, beta polypeptide 7
precursor [Homo sapiens]
(165 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|15451750 chorionic gonadotropin, beta polypeptide 7 precursor... 348 9e-97
gi|4502789 chorionic gonadotropin beta 3 subunit precursor [Homo... 342 7e-95
gi|15451748 chorionic gonadotropin, beta polypeptide 5 precursor... 342 7e-95
gi|15426252 chorionic gonadotropin, beta polypeptide 8 precursor... 342 7e-95
gi|132566538 chorionic gonadotropin, beta polypeptide 2 [Homo sa... 336 5e-93
gi|132566537 chorionic gonadotropin, beta polypeptide 1 [Homo sa... 315 1e-86
gi|4504989 luteinizing hormone beta subunit precursor [Homo sapi... 246 6e-66
gi|115430099 thyroid stimulating hormone, beta precursor [Homo s... 96 1e-20
gi|66528995 follicle stimulating hormone, beta polypeptide precu... 86 1e-17
gi|4503791 follicle stimulating hormone, beta polypeptide precur... 86 1e-17
gi|134031945 SCO-spondin [Homo sapiens] 34 0.050
gi|21735550 mitogen-activated protein kinase kinase kinase 10 [H... 34 0.066
gi|56118234 proline rich 6 [Homo sapiens] 33 0.11
gi|113951734 steroid receptor RNA activator 1 [Homo sapiens] 33 0.15
gi|38026934 Rho guanine nucleotide exchange factor (GEF) 11 isof... 32 0.25
gi|7662086 Rho guanine nucleotide exchange factor (GEF) 11 isofo... 32 0.25
gi|10863911 serine protease inhibitor, Kazal type 2 (acrosin-try... 32 0.33
gi|23397498 transmembrane protein 92 [Homo sapiens] 32 0.33
gi|71274144 AT hook, DNA binding motif, containing 1 [Homo sapiens] 32 0.33
gi|163914392 glioma tumor suppressor candidate region gene 1 [Ho... 31 0.43
gi|14149904 anthrax toxin receptor 1 isoform 1 precursor [Homo s... 31 0.56
gi|146134388 YLP motif containing 1 [Homo sapiens] 31 0.56
gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens] 31 0.56
gi|16936522 wingless-type MMTV integration site family, member 1... 30 0.73
gi|116284392 mucin 2 precursor [Homo sapiens] 30 0.73
gi|239749951 PREDICTED: similar to mucin 2 [Homo sapiens] 30 0.73
gi|116284398 WAS/WASL interacting protein family, member 1 [Homo... 30 0.73
gi|38373695 WAS/WASL interacting protein family, member 1 [Homo ... 30 0.73
gi|19924103 synapsin II isoform IIa [Homo sapiens] 30 0.95
gi|19924101 synapsin II isoform IIb [Homo sapiens] 30 0.95
>gi|15451750 chorionic gonadotropin, beta polypeptide 7 precursor
[Homo sapiens]
Length = 165
Score = 348 bits (894), Expect = 9e-97
Identities = 165/165 (100%), Positives = 165/165 (100%)
Query: 1 MEMFQGLLLLLLLSMGGTWASREMLRPRCRPINATLAVEKEGCPVCITVNTTICAGYCPT 60
MEMFQGLLLLLLLSMGGTWASREMLRPRCRPINATLAVEKEGCPVCITVNTTICAGYCPT
Sbjct: 1 MEMFQGLLLLLLLSMGGTWASREMLRPRCRPINATLAVEKEGCPVCITVNTTICAGYCPT 60
Query: 61 MTRVLQGVLPALPQVVCNYRDVRFESIRLPGCPRGVNPVVSYAVALSCQCALCRRSTTDC 120
MTRVLQGVLPALPQVVCNYRDVRFESIRLPGCPRGVNPVVSYAVALSCQCALCRRSTTDC
Sbjct: 61 MTRVLQGVLPALPQVVCNYRDVRFESIRLPGCPRGVNPVVSYAVALSCQCALCRRSTTDC 120
Query: 121 GGPKDHPLTCDDPRFQASSSSKAPPPSLPSPSRLPGPSDTPILPQ 165
GGPKDHPLTCDDPRFQASSSSKAPPPSLPSPSRLPGPSDTPILPQ
Sbjct: 121 GGPKDHPLTCDDPRFQASSSSKAPPPSLPSPSRLPGPSDTPILPQ 165
>gi|4502789 chorionic gonadotropin beta 3 subunit precursor [Homo
sapiens]
Length = 165
Score = 342 bits (878), Expect = 7e-95
Identities = 162/165 (98%), Positives = 163/165 (98%)
Query: 1 MEMFQGLLLLLLLSMGGTWASREMLRPRCRPINATLAVEKEGCPVCITVNTTICAGYCPT 60
MEMFQGLLLLLLLSMGGTWAS+E LRPRCRPINATLAVEKEGCPVCITVNTTICAGYCPT
Sbjct: 1 MEMFQGLLLLLLLSMGGTWASKEPLRPRCRPINATLAVEKEGCPVCITVNTTICAGYCPT 60
Query: 61 MTRVLQGVLPALPQVVCNYRDVRFESIRLPGCPRGVNPVVSYAVALSCQCALCRRSTTDC 120
MTRVLQGVLPALPQVVCNYRDVRFESIRLPGCPRGVNPVVSYAVALSCQCALCRRSTTDC
Sbjct: 61 MTRVLQGVLPALPQVVCNYRDVRFESIRLPGCPRGVNPVVSYAVALSCQCALCRRSTTDC 120
Query: 121 GGPKDHPLTCDDPRFQASSSSKAPPPSLPSPSRLPGPSDTPILPQ 165
GGPKDHPLTCDDPRFQ SSSSKAPPPSLPSPSRLPGPSDTPILPQ
Sbjct: 121 GGPKDHPLTCDDPRFQDSSSSKAPPPSLPSPSRLPGPSDTPILPQ 165
>gi|15451748 chorionic gonadotropin, beta polypeptide 5 precursor
[Homo sapiens]
Length = 165
Score = 342 bits (878), Expect = 7e-95
Identities = 162/165 (98%), Positives = 163/165 (98%)
Query: 1 MEMFQGLLLLLLLSMGGTWASREMLRPRCRPINATLAVEKEGCPVCITVNTTICAGYCPT 60
MEMFQGLLLLLLLSMGGTWAS+E LRPRCRPINATLAVEKEGCPVCITVNTTICAGYCPT
Sbjct: 1 MEMFQGLLLLLLLSMGGTWASKEPLRPRCRPINATLAVEKEGCPVCITVNTTICAGYCPT 60
Query: 61 MTRVLQGVLPALPQVVCNYRDVRFESIRLPGCPRGVNPVVSYAVALSCQCALCRRSTTDC 120
MTRVLQGVLPALPQVVCNYRDVRFESIRLPGCPRGVNPVVSYAVALSCQCALCRRSTTDC
Sbjct: 61 MTRVLQGVLPALPQVVCNYRDVRFESIRLPGCPRGVNPVVSYAVALSCQCALCRRSTTDC 120
Query: 121 GGPKDHPLTCDDPRFQASSSSKAPPPSLPSPSRLPGPSDTPILPQ 165
GGPKDHPLTCDDPRFQ SSSSKAPPPSLPSPSRLPGPSDTPILPQ
Sbjct: 121 GGPKDHPLTCDDPRFQDSSSSKAPPPSLPSPSRLPGPSDTPILPQ 165
>gi|15426252 chorionic gonadotropin, beta polypeptide 8 precursor
[Homo sapiens]
Length = 165
Score = 342 bits (878), Expect = 7e-95
Identities = 162/165 (98%), Positives = 163/165 (98%)
Query: 1 MEMFQGLLLLLLLSMGGTWASREMLRPRCRPINATLAVEKEGCPVCITVNTTICAGYCPT 60
MEMFQGLLLLLLLSMGGTWAS+E LRPRCRPINATLAVEKEGCPVCITVNTTICAGYCPT
Sbjct: 1 MEMFQGLLLLLLLSMGGTWASKEPLRPRCRPINATLAVEKEGCPVCITVNTTICAGYCPT 60
Query: 61 MTRVLQGVLPALPQVVCNYRDVRFESIRLPGCPRGVNPVVSYAVALSCQCALCRRSTTDC 120
MTRVLQGVLPALPQVVCNYRDVRFESIRLPGCPRGVNPVVSYAVALSCQCALCRRSTTDC
Sbjct: 61 MTRVLQGVLPALPQVVCNYRDVRFESIRLPGCPRGVNPVVSYAVALSCQCALCRRSTTDC 120
Query: 121 GGPKDHPLTCDDPRFQASSSSKAPPPSLPSPSRLPGPSDTPILPQ 165
GGPKDHPLTCDDPRFQ SSSSKAPPPSLPSPSRLPGPSDTPILPQ
Sbjct: 121 GGPKDHPLTCDDPRFQDSSSSKAPPPSLPSPSRLPGPSDTPILPQ 165
>gi|132566538 chorionic gonadotropin, beta polypeptide 2 [Homo
sapiens]
Length = 163
Score = 336 bits (862), Expect = 5e-93
Identities = 159/163 (97%), Positives = 161/163 (98%)
Query: 3 MFQGLLLLLLLSMGGTWASREMLRPRCRPINATLAVEKEGCPVCITVNTTICAGYCPTMT 62
M +GLLLLLLLSMGGTWAS+E LRPRCRPINATLAVEKEGCPVCITVNTTICAGYCPTMT
Sbjct: 1 MSKGLLLLLLLSMGGTWASKEPLRPRCRPINATLAVEKEGCPVCITVNTTICAGYCPTMT 60
Query: 63 RVLQGVLPALPQVVCNYRDVRFESIRLPGCPRGVNPVVSYAVALSCQCALCRRSTTDCGG 122
RVLQGVLPALPQVVCNYRDVRFESIRLPGCPRGVNPVVSYAVALSCQCALCRRSTTDCGG
Sbjct: 61 RVLQGVLPALPQVVCNYRDVRFESIRLPGCPRGVNPVVSYAVALSCQCALCRRSTTDCGG 120
Query: 123 PKDHPLTCDDPRFQASSSSKAPPPSLPSPSRLPGPSDTPILPQ 165
PKDHPLTCDDPRFQASSSSKAPPPSLPSPSRLPGPSDTPILPQ
Sbjct: 121 PKDHPLTCDDPRFQASSSSKAPPPSLPSPSRLPGPSDTPILPQ 163
>gi|132566537 chorionic gonadotropin, beta polypeptide 1 [Homo
sapiens]
Length = 155
Score = 315 bits (806), Expect = 1e-86
Identities = 149/155 (96%), Positives = 151/155 (97%)
Query: 3 MFQGLLLLLLLSMGGTWASREMLRPRCRPINATLAVEKEGCPVCITVNTTICAGYCPTMT 62
M + LLLLLLLSMGGTWAS+E LRPRCRPINATLAVEKEGCPVCITVNTTICAGYCPTMT
Sbjct: 1 MSKRLLLLLLLSMGGTWASKEPLRPRCRPINATLAVEKEGCPVCITVNTTICAGYCPTMT 60
Query: 63 RVLQGVLPALPQVVCNYRDVRFESIRLPGCPRGVNPVVSYAVALSCQCALCRRSTTDCGG 122
RVLQGVLPALPQVVCNYRDVRFESIRLPGCPRGVNPVVSYAVALSCQCALCRRSTTDCGG
Sbjct: 61 RVLQGVLPALPQVVCNYRDVRFESIRLPGCPRGVNPVVSYAVALSCQCALCRRSTTDCGG 120
Query: 123 PKDHPLTCDDPRFQASSSSKAPPPSLPSPSRLPGP 157
PKDHPLTCDDPRFQ SSSSKAPPPSLPSPSRLPGP
Sbjct: 121 PKDHPLTCDDPRFQDSSSSKAPPPSLPSPSRLPGP 155
>gi|4504989 luteinizing hormone beta subunit precursor [Homo
sapiens]
Length = 141
Score = 246 bits (628), Expect = 6e-66
Identities = 115/134 (85%), Positives = 120/134 (89%)
Query: 1 MEMFQGLLLLLLLSMGGTWASREMLRPRCRPINATLAVEKEGCPVCITVNTTICAGYCPT 60
MEM QGLLLLLLLSMGG WASRE LRP C PINA LAVEKEGCPVCITVNTTICAGYCPT
Sbjct: 1 MEMLQGLLLLLLLSMGGAWASREPLRPWCHPINAILAVEKEGCPVCITVNTTICAGYCPT 60
Query: 61 MTRVLQGVLPALPQVVCNYRDVRFESIRLPGCPRGVNPVVSYAVALSCQCALCRRSTTDC 120
M RVLQ VLP LPQVVC YRDVRFESIRLPGCPRGV+PVVS+ VALSC+C CRRST+DC
Sbjct: 61 MMRVLQAVLPPLPQVVCTYRDVRFESIRLPGCPRGVDPVVSFPVALSCRCGPCRRSTSDC 120
Query: 121 GGPKDHPLTCDDPR 134
GGPKDHPLTCD P+
Sbjct: 121 GGPKDHPLTCDHPQ 134
>gi|115430099 thyroid stimulating hormone, beta precursor [Homo
sapiens]
Length = 138
Score = 95.9 bits (237), Expect = 1e-20
Identities = 46/96 (47%), Positives = 58/96 (60%), Gaps = 6/96 (6%)
Query: 29 CRPINATLAVEKEGCPVCITVNTTICAGYCPTMTRVLQGVL----PALPQVVCNYRDVRF 84
C P T+ +E+ C C+T+NTTICAGYC MTR + G L AL Q VC YRD +
Sbjct: 22 CIPTEYTMHIERRECAYCLTINTTICAGYC--MTRDINGKLFLPKYALSQDVCTYRDFIY 79
Query: 85 ESIRLPGCPRGVNPVVSYAVALSCQCALCRRSTTDC 120
++ +PGCP V P SY VALSC+C C +DC
Sbjct: 80 RTVEIPGCPLHVAPYFSYPVALSCKCGKCNTDYSDC 115
>gi|66528995 follicle stimulating hormone, beta polypeptide
precursor [Homo sapiens]
Length = 129
Score = 85.9 bits (211), Expect = 1e-17
Identities = 38/94 (40%), Positives = 57/94 (60%), Gaps = 4/94 (4%)
Query: 29 CRPINATLAVEKEGCPVCITVNTTICAGYCPTMTRVLQGVLPALPQV--VCNYRDVRFES 86
C N T+A+EKE C CI++NTT CAGYC T V + PA P++ C ++++ +E+
Sbjct: 21 CELTNITIAIEKEECRFCISINTTWCAGYCYTRDLVYKD--PARPKIQKTCTFKELVYET 78
Query: 87 IRLPGCPRGVNPVVSYAVALSCQCALCRRSTTDC 120
+R+PGC + + +Y VA C C C +TDC
Sbjct: 79 VRVPGCAHHADSLYTYPVATQCHCGKCDSDSTDC 112
>gi|4503791 follicle stimulating hormone, beta polypeptide precursor
[Homo sapiens]
Length = 129
Score = 85.9 bits (211), Expect = 1e-17
Identities = 38/94 (40%), Positives = 57/94 (60%), Gaps = 4/94 (4%)
Query: 29 CRPINATLAVEKEGCPVCITVNTTICAGYCPTMTRVLQGVLPALPQV--VCNYRDVRFES 86
C N T+A+EKE C CI++NTT CAGYC T V + PA P++ C ++++ +E+
Sbjct: 21 CELTNITIAIEKEECRFCISINTTWCAGYCYTRDLVYKD--PARPKIQKTCTFKELVYET 78
Query: 87 IRLPGCPRGVNPVVSYAVALSCQCALCRRSTTDC 120
+R+PGC + + +Y VA C C C +TDC
Sbjct: 79 VRVPGCAHHADSLYTYPVATQCHCGKCDSDSTDC 112
>gi|134031945 SCO-spondin [Homo sapiens]
Length = 5147
Score = 34.3 bits (77), Expect = 0.050
Identities = 25/76 (32%), Positives = 35/76 (46%), Gaps = 17/76 (22%)
Query: 49 VNTTICAGYCPTMTRVLQGVLPALPQV-----VCNYR-----DVRFESIRLPGCPRGVNP 98
V + C+GYCP+ T V+P P + C+YR VR ++R C G
Sbjct: 5072 VEVSYCSGYCPSSTH----VMPEEPYLQSQCDCCSYRLDPESPVRILNLR---CLGGHTE 5124
Query: 99 VVSYAVALSCQCALCR 114
V V SCQC+ C+
Sbjct: 5125 PVVLPVIHSCQCSSCQ 5140
Score = 28.5 bits (62), Expect = 2.8
Identities = 20/55 (36%), Positives = 24/55 (43%), Gaps = 8/55 (14%)
Query: 106 LSCQCALCRRSTTDCGGPKDHPLTCDDPRFQASSSSKAPPPSLPSP--SRLPGPS 158
+SC C + C G D P D+ P PSLP+P S LPGPS
Sbjct: 1497 VSCVDGTCLGAIQLCDGVWDCPDGADE------GPGHCPLPSLPTPPASTLPGPS 1545
Score = 27.3 bits (59), Expect = 6.2
Identities = 26/83 (31%), Positives = 33/83 (39%), Gaps = 6/83 (7%)
Query: 69 LPALPQVVCNYRDVRFESIRLPGCPR--GVNPVVSYA-VALSCQCALCRRSTTDCGGPKD 125
LPA P +C+ + E L GC R G P ++ + SC L R T C P
Sbjct: 3226 LPATPTPLCSGPEAEEEPCLLQGCDRAGGWGPWGPWSHCSRSCGGGL-RSRTRACDQPPP 3284
Query: 126 HPL--TCDDPRFQASSSSKAPPP 146
L C+ PR Q P P
Sbjct: 3285 QGLGDYCEGPRAQGEVCQALPCP 3307
>gi|21735550 mitogen-activated protein kinase kinase kinase 10 [Homo
sapiens]
Length = 954
Score = 33.9 bits (76), Expect = 0.066
Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 4/75 (5%)
Query: 90 PGCPRGVNPVVSYAVALSCQCALCRRST-TDCGGPKDHPLTCDDPRFQASSSSKAPPPSL 148
P P G V + L+ L S+ +DC + + D +A+ ++ +PPPS
Sbjct: 724 PARPHGRREDVGPGLGLAPSATLVSLSSVSDCNSTRSLLRSDSD---EAAPAAPSPPPSP 780
Query: 149 PSPSRLPGPSDTPIL 163
P+P+ P PS P++
Sbjct: 781 PAPTPTPSPSTNPLV 795
>gi|56118234 proline rich 6 [Homo sapiens]
Length = 272
Score = 33.1 bits (74), Expect = 0.11
Identities = 24/76 (31%), Positives = 28/76 (36%), Gaps = 9/76 (11%)
Query: 98 PVVSYAVALSCQCALCRRSTTDCGG--------PKDHP-LTCDDPRFQASSSSKAPPPSL 148
P S A AL+ RRS + G P + P L PR Q + PPP L
Sbjct: 24 PAASAAAALAPSATRTRRSASQAGSKSQAVEKPPSEKPRLRRSSPRAQEEGPGEPPPPEL 83
Query: 149 PSPSRLPGPSDTPILP 164
P P TP P
Sbjct: 84 ALLPPPPPPPPTPATP 99
>gi|113951734 steroid receptor RNA activator 1 [Homo sapiens]
Length = 236
Score = 32.7 bits (73), Expect = 0.15
Identities = 23/71 (32%), Positives = 28/71 (39%), Gaps = 7/71 (9%)
Query: 94 RGVNPVVSYAVALSCQCALCRRS--TTDCGGPKDHPLTCDDPRFQASSSSKAPPPSLPSP 151
RG N ++ L Q RRS T P+D PR AS +S PPP P P
Sbjct: 25 RGWNDPPQFSYGLQTQAGGPRRSLLTKRVAAPQD-----GSPRVPASETSPGPPPMGPPP 79
Query: 152 SRLPGPSDTPI 162
P P+
Sbjct: 80 PSSKAPRSPPV 90
>gi|38026934 Rho guanine nucleotide exchange factor (GEF) 11 isoform
2 [Homo sapiens]
Length = 1562
Score = 32.0 bits (71), Expect = 0.25
Identities = 15/42 (35%), Positives = 19/42 (45%)
Query: 116 STTDCGGPKDHPLTCDDPRFQASSSSKAPPPSLPSPSRLPGP 157
S+ G + P PR + S PPP LP P R+ GP
Sbjct: 125 SSMGISGLQQDPSPAGAPRITSVIPSPPPPPPLPPPQRITGP 166
>gi|7662086 Rho guanine nucleotide exchange factor (GEF) 11 isoform
1 [Homo sapiens]
Length = 1522
Score = 32.0 bits (71), Expect = 0.25
Identities = 15/42 (35%), Positives = 19/42 (45%)
Query: 116 STTDCGGPKDHPLTCDDPRFQASSSSKAPPPSLPSPSRLPGP 157
S+ G + P PR + S PPP LP P R+ GP
Sbjct: 125 SSMGISGLQQDPSPAGAPRITSVIPSPPPPPPLPPPQRITGP 166
>gi|10863911 serine protease inhibitor, Kazal type 2
(acrosin-trypsin inhibitor) [Homo sapiens]
Length = 84
Score = 31.6 bits (70), Expect = 0.33
Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 79 YRDVRFESIRLPGCPRGVNPVV-SYAVALSCQCALCRR 115
YR RLPGCPR NPV S + +C LC +
Sbjct: 31 YRTPNCSQYRLPGCPRHFNPVCGSDMSTYANECTLCMK 68
>gi|23397498 transmembrane protein 92 [Homo sapiens]
Length = 159
Score = 31.6 bits (70), Expect = 0.33
Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 6/60 (10%)
Query: 108 CQCALCRR----STTDCGGPKDHPLTCDDPRFQASSSSKAPPPS--LPSPSRLPGPSDTP 161
C C CR + DC GP + P R + S S+ PP S + PS P P++ P
Sbjct: 78 CFCRNCREPEPDTPVDCRGPLELPSIIPPERVRVSLSAPPPPYSEVILKPSLGPTPTEPP 137
>gi|71274144 AT hook, DNA binding motif, containing 1 [Homo sapiens]
Length = 1603
Score = 31.6 bits (70), Expect = 0.33
Identities = 18/56 (32%), Positives = 24/56 (42%), Gaps = 5/56 (8%)
Query: 112 LCRRSTTDCG-----GPKDHPLTCDDPRFQASSSSKAPPPSLPSPSRLPGPSDTPI 162
LCRR G GP+ L P ++ ++ PPP P P LPGP +
Sbjct: 393 LCRRRKAGRGRKADAGPEGRLLPLPMPTGLVAALAEPPPPPPPPPPALPGPGPVSV 448
>gi|163914392 glioma tumor suppressor candidate region gene 1 [Homo
sapiens]
Length = 1560
Score = 31.2 bits (69), Expect = 0.43
Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Query: 133 PRFQASSSSKAPPPSLPS--PSRLPGPSDTPILP 164
P+ S +S AP P +P+ P + PGPS +P LP
Sbjct: 747 PQAPDSQASPAPAPQIPAAAPLKGPGPSSSPSLP 780
>gi|14149904 anthrax toxin receptor 1 isoform 1 precursor [Homo
sapiens]
Length = 564
Score = 30.8 bits (68), Expect = 0.56
Identities = 14/38 (36%), Positives = 18/38 (47%)
Query: 127 PLTCDDPRFQASSSSKAPPPSLPSPSRLPGPSDTPILP 164
P + P + S+ PPP P P+R P PS P P
Sbjct: 525 PPSAPTPPIPSPPSTLPPPPQAPPPNRAPPPSRPPPRP 562
>gi|146134388 YLP motif containing 1 [Homo sapiens]
Length = 2146
Score = 30.8 bits (68), Expect = 0.56
Identities = 17/42 (40%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 123 PKDHPLTCDDPRFQASSSSKAPPPSLPSPSRLPGPSDTPILP 164
P P + P S SS PPP LP PS L P+LP
Sbjct: 566 PPSLPTSVPPPGMPPSLSSAGPPPVLPPPS-LSSAGPPPVLP 606
>gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens]
Length = 904
Score = 30.8 bits (68), Expect = 0.56
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 6/54 (11%)
Query: 115 RSTTDCGGPKDHPLTCDDPRFQASSSSKAPPP------SLPSPSRLPGPSDTPI 162
RST + P+ + PR +A +S +PPP S P + P PS PI
Sbjct: 668 RSTREARSPQPNKRHSPSPRPRAPQTSSSPPPVRRGASSSPQRRQSPSPSTRPI 721
>gi|16936522 wingless-type MMTV integration site family, member 10B
precursor [Homo sapiens]
Length = 389
Score = 30.4 bits (67), Expect = 0.73
Identities = 24/64 (37%), Positives = 32/64 (50%), Gaps = 9/64 (14%)
Query: 105 ALSCQCALCRRSTTDCG----GPKDHPLTCDDPRFQASSSSKAPPPSLPSP----SRLPG 156
A++ C+L + + CG G +D L + QA S K+ P SLPSP S PG
Sbjct: 131 AVATACSLGKLVSCGCGWKGSGEQDR-LRAKLLQLQALSRGKSFPHSLPSPGPGSSPSPG 189
Query: 157 PSDT 160
P DT
Sbjct: 190 PQDT 193
>gi|116284392 mucin 2 precursor [Homo sapiens]
Length = 5179
Score = 30.4 bits (67), Expect = 0.73
Identities = 26/106 (24%), Positives = 35/106 (33%), Gaps = 7/106 (6%)
Query: 18 TWASREMLRPRCRPINATLAVEKEGCPVCITVNTTICAGYCPTMTRVLQGVLPALPQVVC 77
T R R C + T V GC + +N C+G C T C
Sbjct: 5064 TCTPRNETRVPCSTVPVTTEVSYAGCTKTVLMNH--CSGSCGTFVMYSAKAQALDHSCSC 5121
Query: 78 NYRDVRFESIRLPGCPRGVNPVVSYAVALSCQCALCRRSTTDCGGP 123
+ + + CP G + +Y SCQC T CG P
Sbjct: 5122 CKEEKTSQREVVLSCPNGGSLTHTYTHIESCQC-----QDTVCGLP 5162
>gi|239749951 PREDICTED: similar to mucin 2 [Homo sapiens]
Length = 2639
Score = 30.4 bits (67), Expect = 0.73
Identities = 26/106 (24%), Positives = 35/106 (33%), Gaps = 7/106 (6%)
Query: 18 TWASREMLRPRCRPINATLAVEKEGCPVCITVNTTICAGYCPTMTRVLQGVLPALPQVVC 77
T R R C + T V GC + +N C+G C T C
Sbjct: 2524 TCTPRNETRVPCSTVPVTTEVSYAGCTKTVLMNH--CSGSCGTFVMYSAKAQALDHSCSC 2581
Query: 78 NYRDVRFESIRLPGCPRGVNPVVSYAVALSCQCALCRRSTTDCGGP 123
+ + + CP G + +Y SCQC T CG P
Sbjct: 2582 CKEEKTSQREVVLSCPNGGSLTHTYTHIESCQC-----QDTVCGLP 2622
>gi|116284398 WAS/WASL interacting protein family, member 1 [Homo
sapiens]
Length = 503
Score = 30.4 bits (67), Expect = 0.73
Identities = 19/39 (48%), Positives = 21/39 (53%), Gaps = 6/39 (15%)
Query: 133 PRFQASSSSKAPPP--SLPSPSRLP----GPSDTPILPQ 165
PR ASS + PPP S P P LP G +TP LPQ
Sbjct: 298 PRPSASSQAPPPPPPPSRPGPPPLPPSSSGNDETPRLPQ 336
>gi|38373695 WAS/WASL interacting protein family, member 1 [Homo
sapiens]
Length = 503
Score = 30.4 bits (67), Expect = 0.73
Identities = 19/39 (48%), Positives = 21/39 (53%), Gaps = 6/39 (15%)
Query: 133 PRFQASSSSKAPPP--SLPSPSRLP----GPSDTPILPQ 165
PR ASS + PPP S P P LP G +TP LPQ
Sbjct: 298 PRPSASSQAPPPPPPPSRPGPPPLPPSSSGNDETPRLPQ 336
>gi|19924103 synapsin II isoform IIa [Homo sapiens]
Length = 582
Score = 30.0 bits (66), Expect = 0.95
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 137 ASSSSKAPPPSLPSPSRLPGPSDTP 161
A+S+S APP + P P R P P+ P
Sbjct: 44 AASASAAPPTASPGPERRPPPASAP 68
>gi|19924101 synapsin II isoform IIb [Homo sapiens]
Length = 478
Score = 30.0 bits (66), Expect = 0.95
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 137 ASSSSKAPPPSLPSPSRLPGPSDTP 161
A+S+S APP + P P R P P+ P
Sbjct: 44 AASASAAPPTASPGPERRPPPASAP 68
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.322 0.138 0.452
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,290,493
Number of Sequences: 37866
Number of extensions: 452266
Number of successful extensions: 4252
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 71
Number of HSP's that attempted gapping in prelim test: 3959
Number of HSP's gapped (non-prelim): 358
length of query: 165
length of database: 18,247,518
effective HSP length: 94
effective length of query: 71
effective length of database: 14,688,114
effective search space: 1042856094
effective search space used: 1042856094
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.