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Search of human proteins with 15451748
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15451748 chorionic gonadotropin, beta polypeptide 5
precursor [Homo sapiens]
(165 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|4502789 chorionic gonadotropin beta 3 subunit precursor [Homo... 350 3e-97
gi|15451748 chorionic gonadotropin, beta polypeptide 5 precursor... 350 3e-97
gi|15426252 chorionic gonadotropin, beta polypeptide 8 precursor... 350 3e-97
gi|15451750 chorionic gonadotropin, beta polypeptide 7 precursor... 342 7e-95
gi|132566538 chorionic gonadotropin, beta polypeptide 2 [Homo sa... 338 1e-93
gi|132566537 chorionic gonadotropin, beta polypeptide 1 [Homo sa... 322 7e-89
gi|4504989 luteinizing hormone beta subunit precursor [Homo sapi... 248 1e-66
gi|115430099 thyroid stimulating hormone, beta precursor [Homo s... 96 1e-20
gi|66528995 follicle stimulating hormone, beta polypeptide precu... 86 1e-17
gi|4503791 follicle stimulating hormone, beta polypeptide precur... 86 1e-17
gi|56118234 proline rich 6 [Homo sapiens] 34 0.050
gi|163914392 glioma tumor suppressor candidate region gene 1 [Ho... 34 0.050
gi|134031945 SCO-spondin [Homo sapiens] 34 0.050
gi|38026934 Rho guanine nucleotide exchange factor (GEF) 11 isof... 32 0.33
gi|7662086 Rho guanine nucleotide exchange factor (GEF) 11 isofo... 32 0.33
gi|21735550 mitogen-activated protein kinase kinase kinase 10 [H... 32 0.33
gi|10863911 serine protease inhibitor, Kazal type 2 (acrosin-try... 32 0.33
gi|146134388 YLP motif containing 1 [Homo sapiens] 31 0.56
gi|113951734 steroid receptor RNA activator 1 [Homo sapiens] 30 0.73
gi|14149904 anthrax toxin receptor 1 isoform 1 precursor [Homo s... 30 0.73
gi|23397498 transmembrane protein 92 [Homo sapiens] 30 0.73
gi|71274144 AT hook, DNA binding motif, containing 1 [Homo sapiens] 30 0.73
gi|161019170 mucin 5AC [Homo sapiens] 30 1.2
gi|55742695 sterile alpha motif domain containing 4B [Homo sapiens] 30 1.2
gi|116284392 mucin 2 precursor [Homo sapiens] 30 1.2
gi|239749951 PREDICTED: similar to mucin 2 [Homo sapiens] 30 1.2
gi|4758226 E2F transcription factor 2 [Homo sapiens] 30 1.2
gi|19924099 synapsin I isoform Ia [Homo sapiens] 30 1.2
gi|19924097 synapsin I isoform Ib [Homo sapiens] 30 1.2
gi|169163027 PREDICTED: similar to Putative acrosin-like proteas... 29 1.6
>gi|4502789 chorionic gonadotropin beta 3 subunit precursor [Homo
sapiens]
Length = 165
Score = 350 bits (898), Expect = 3e-97
Identities = 165/165 (100%), Positives = 165/165 (100%)
Query: 1 MEMFQGLLLLLLLSMGGTWASKEPLRPRCRPINATLAVEKEGCPVCITVNTTICAGYCPT 60
MEMFQGLLLLLLLSMGGTWASKEPLRPRCRPINATLAVEKEGCPVCITVNTTICAGYCPT
Sbjct: 1 MEMFQGLLLLLLLSMGGTWASKEPLRPRCRPINATLAVEKEGCPVCITVNTTICAGYCPT 60
Query: 61 MTRVLQGVLPALPQVVCNYRDVRFESIRLPGCPRGVNPVVSYAVALSCQCALCRRSTTDC 120
MTRVLQGVLPALPQVVCNYRDVRFESIRLPGCPRGVNPVVSYAVALSCQCALCRRSTTDC
Sbjct: 61 MTRVLQGVLPALPQVVCNYRDVRFESIRLPGCPRGVNPVVSYAVALSCQCALCRRSTTDC 120
Query: 121 GGPKDHPLTCDDPRFQDSSSSKAPPPSLPSPSRLPGPSDTPILPQ 165
GGPKDHPLTCDDPRFQDSSSSKAPPPSLPSPSRLPGPSDTPILPQ
Sbjct: 121 GGPKDHPLTCDDPRFQDSSSSKAPPPSLPSPSRLPGPSDTPILPQ 165
>gi|15451748 chorionic gonadotropin, beta polypeptide 5 precursor
[Homo sapiens]
Length = 165
Score = 350 bits (898), Expect = 3e-97
Identities = 165/165 (100%), Positives = 165/165 (100%)
Query: 1 MEMFQGLLLLLLLSMGGTWASKEPLRPRCRPINATLAVEKEGCPVCITVNTTICAGYCPT 60
MEMFQGLLLLLLLSMGGTWASKEPLRPRCRPINATLAVEKEGCPVCITVNTTICAGYCPT
Sbjct: 1 MEMFQGLLLLLLLSMGGTWASKEPLRPRCRPINATLAVEKEGCPVCITVNTTICAGYCPT 60
Query: 61 MTRVLQGVLPALPQVVCNYRDVRFESIRLPGCPRGVNPVVSYAVALSCQCALCRRSTTDC 120
MTRVLQGVLPALPQVVCNYRDVRFESIRLPGCPRGVNPVVSYAVALSCQCALCRRSTTDC
Sbjct: 61 MTRVLQGVLPALPQVVCNYRDVRFESIRLPGCPRGVNPVVSYAVALSCQCALCRRSTTDC 120
Query: 121 GGPKDHPLTCDDPRFQDSSSSKAPPPSLPSPSRLPGPSDTPILPQ 165
GGPKDHPLTCDDPRFQDSSSSKAPPPSLPSPSRLPGPSDTPILPQ
Sbjct: 121 GGPKDHPLTCDDPRFQDSSSSKAPPPSLPSPSRLPGPSDTPILPQ 165
>gi|15426252 chorionic gonadotropin, beta polypeptide 8 precursor
[Homo sapiens]
Length = 165
Score = 350 bits (898), Expect = 3e-97
Identities = 165/165 (100%), Positives = 165/165 (100%)
Query: 1 MEMFQGLLLLLLLSMGGTWASKEPLRPRCRPINATLAVEKEGCPVCITVNTTICAGYCPT 60
MEMFQGLLLLLLLSMGGTWASKEPLRPRCRPINATLAVEKEGCPVCITVNTTICAGYCPT
Sbjct: 1 MEMFQGLLLLLLLSMGGTWASKEPLRPRCRPINATLAVEKEGCPVCITVNTTICAGYCPT 60
Query: 61 MTRVLQGVLPALPQVVCNYRDVRFESIRLPGCPRGVNPVVSYAVALSCQCALCRRSTTDC 120
MTRVLQGVLPALPQVVCNYRDVRFESIRLPGCPRGVNPVVSYAVALSCQCALCRRSTTDC
Sbjct: 61 MTRVLQGVLPALPQVVCNYRDVRFESIRLPGCPRGVNPVVSYAVALSCQCALCRRSTTDC 120
Query: 121 GGPKDHPLTCDDPRFQDSSSSKAPPPSLPSPSRLPGPSDTPILPQ 165
GGPKDHPLTCDDPRFQDSSSSKAPPPSLPSPSRLPGPSDTPILPQ
Sbjct: 121 GGPKDHPLTCDDPRFQDSSSSKAPPPSLPSPSRLPGPSDTPILPQ 165
>gi|15451750 chorionic gonadotropin, beta polypeptide 7 precursor
[Homo sapiens]
Length = 165
Score = 342 bits (878), Expect = 7e-95
Identities = 162/165 (98%), Positives = 163/165 (98%)
Query: 1 MEMFQGLLLLLLLSMGGTWASKEPLRPRCRPINATLAVEKEGCPVCITVNTTICAGYCPT 60
MEMFQGLLLLLLLSMGGTWAS+E LRPRCRPINATLAVEKEGCPVCITVNTTICAGYCPT
Sbjct: 1 MEMFQGLLLLLLLSMGGTWASREMLRPRCRPINATLAVEKEGCPVCITVNTTICAGYCPT 60
Query: 61 MTRVLQGVLPALPQVVCNYRDVRFESIRLPGCPRGVNPVVSYAVALSCQCALCRRSTTDC 120
MTRVLQGVLPALPQVVCNYRDVRFESIRLPGCPRGVNPVVSYAVALSCQCALCRRSTTDC
Sbjct: 61 MTRVLQGVLPALPQVVCNYRDVRFESIRLPGCPRGVNPVVSYAVALSCQCALCRRSTTDC 120
Query: 121 GGPKDHPLTCDDPRFQDSSSSKAPPPSLPSPSRLPGPSDTPILPQ 165
GGPKDHPLTCDDPRFQ SSSSKAPPPSLPSPSRLPGPSDTPILPQ
Sbjct: 121 GGPKDHPLTCDDPRFQASSSSKAPPPSLPSPSRLPGPSDTPILPQ 165
>gi|132566538 chorionic gonadotropin, beta polypeptide 2 [Homo
sapiens]
Length = 163
Score = 338 bits (868), Expect = 1e-93
Identities = 160/163 (98%), Positives = 161/163 (98%)
Query: 3 MFQGLLLLLLLSMGGTWASKEPLRPRCRPINATLAVEKEGCPVCITVNTTICAGYCPTMT 62
M +GLLLLLLLSMGGTWASKEPLRPRCRPINATLAVEKEGCPVCITVNTTICAGYCPTMT
Sbjct: 1 MSKGLLLLLLLSMGGTWASKEPLRPRCRPINATLAVEKEGCPVCITVNTTICAGYCPTMT 60
Query: 63 RVLQGVLPALPQVVCNYRDVRFESIRLPGCPRGVNPVVSYAVALSCQCALCRRSTTDCGG 122
RVLQGVLPALPQVVCNYRDVRFESIRLPGCPRGVNPVVSYAVALSCQCALCRRSTTDCGG
Sbjct: 61 RVLQGVLPALPQVVCNYRDVRFESIRLPGCPRGVNPVVSYAVALSCQCALCRRSTTDCGG 120
Query: 123 PKDHPLTCDDPRFQDSSSSKAPPPSLPSPSRLPGPSDTPILPQ 165
PKDHPLTCDDPRFQ SSSSKAPPPSLPSPSRLPGPSDTPILPQ
Sbjct: 121 PKDHPLTCDDPRFQASSSSKAPPPSLPSPSRLPGPSDTPILPQ 163
>gi|132566537 chorionic gonadotropin, beta polypeptide 1 [Homo
sapiens]
Length = 155
Score = 322 bits (826), Expect = 7e-89
Identities = 152/155 (98%), Positives = 153/155 (98%)
Query: 3 MFQGLLLLLLLSMGGTWASKEPLRPRCRPINATLAVEKEGCPVCITVNTTICAGYCPTMT 62
M + LLLLLLLSMGGTWASKEPLRPRCRPINATLAVEKEGCPVCITVNTTICAGYCPTMT
Sbjct: 1 MSKRLLLLLLLSMGGTWASKEPLRPRCRPINATLAVEKEGCPVCITVNTTICAGYCPTMT 60
Query: 63 RVLQGVLPALPQVVCNYRDVRFESIRLPGCPRGVNPVVSYAVALSCQCALCRRSTTDCGG 122
RVLQGVLPALPQVVCNYRDVRFESIRLPGCPRGVNPVVSYAVALSCQCALCRRSTTDCGG
Sbjct: 61 RVLQGVLPALPQVVCNYRDVRFESIRLPGCPRGVNPVVSYAVALSCQCALCRRSTTDCGG 120
Query: 123 PKDHPLTCDDPRFQDSSSSKAPPPSLPSPSRLPGP 157
PKDHPLTCDDPRFQDSSSSKAPPPSLPSPSRLPGP
Sbjct: 121 PKDHPLTCDDPRFQDSSSSKAPPPSLPSPSRLPGP 155
>gi|4504989 luteinizing hormone beta subunit precursor [Homo
sapiens]
Length = 141
Score = 248 bits (634), Expect = 1e-66
Identities = 115/134 (85%), Positives = 121/134 (90%)
Query: 1 MEMFQGLLLLLLLSMGGTWASKEPLRPRCRPINATLAVEKEGCPVCITVNTTICAGYCPT 60
MEM QGLLLLLLLSMGG WAS+EPLRP C PINA LAVEKEGCPVCITVNTTICAGYCPT
Sbjct: 1 MEMLQGLLLLLLLSMGGAWASREPLRPWCHPINAILAVEKEGCPVCITVNTTICAGYCPT 60
Query: 61 MTRVLQGVLPALPQVVCNYRDVRFESIRLPGCPRGVNPVVSYAVALSCQCALCRRSTTDC 120
M RVLQ VLP LPQVVC YRDVRFESIRLPGCPRGV+PVVS+ VALSC+C CRRST+DC
Sbjct: 61 MMRVLQAVLPPLPQVVCTYRDVRFESIRLPGCPRGVDPVVSFPVALSCRCGPCRRSTSDC 120
Query: 121 GGPKDHPLTCDDPR 134
GGPKDHPLTCD P+
Sbjct: 121 GGPKDHPLTCDHPQ 134
>gi|115430099 thyroid stimulating hormone, beta precursor [Homo
sapiens]
Length = 138
Score = 95.9 bits (237), Expect = 1e-20
Identities = 46/96 (47%), Positives = 58/96 (60%), Gaps = 6/96 (6%)
Query: 29 CRPINATLAVEKEGCPVCITVNTTICAGYCPTMTRVLQGVL----PALPQVVCNYRDVRF 84
C P T+ +E+ C C+T+NTTICAGYC MTR + G L AL Q VC YRD +
Sbjct: 22 CIPTEYTMHIERRECAYCLTINTTICAGYC--MTRDINGKLFLPKYALSQDVCTYRDFIY 79
Query: 85 ESIRLPGCPRGVNPVVSYAVALSCQCALCRRSTTDC 120
++ +PGCP V P SY VALSC+C C +DC
Sbjct: 80 RTVEIPGCPLHVAPYFSYPVALSCKCGKCNTDYSDC 115
>gi|66528995 follicle stimulating hormone, beta polypeptide
precursor [Homo sapiens]
Length = 129
Score = 85.9 bits (211), Expect = 1e-17
Identities = 38/94 (40%), Positives = 57/94 (60%), Gaps = 4/94 (4%)
Query: 29 CRPINATLAVEKEGCPVCITVNTTICAGYCPTMTRVLQGVLPALPQV--VCNYRDVRFES 86
C N T+A+EKE C CI++NTT CAGYC T V + PA P++ C ++++ +E+
Sbjct: 21 CELTNITIAIEKEECRFCISINTTWCAGYCYTRDLVYKD--PARPKIQKTCTFKELVYET 78
Query: 87 IRLPGCPRGVNPVVSYAVALSCQCALCRRSTTDC 120
+R+PGC + + +Y VA C C C +TDC
Sbjct: 79 VRVPGCAHHADSLYTYPVATQCHCGKCDSDSTDC 112
>gi|4503791 follicle stimulating hormone, beta polypeptide precursor
[Homo sapiens]
Length = 129
Score = 85.9 bits (211), Expect = 1e-17
Identities = 38/94 (40%), Positives = 57/94 (60%), Gaps = 4/94 (4%)
Query: 29 CRPINATLAVEKEGCPVCITVNTTICAGYCPTMTRVLQGVLPALPQV--VCNYRDVRFES 86
C N T+A+EKE C CI++NTT CAGYC T V + PA P++ C ++++ +E+
Sbjct: 21 CELTNITIAIEKEECRFCISINTTWCAGYCYTRDLVYKD--PARPKIQKTCTFKELVYET 78
Query: 87 IRLPGCPRGVNPVVSYAVALSCQCALCRRSTTDC 120
+R+PGC + + +Y VA C C C +TDC
Sbjct: 79 VRVPGCAHHADSLYTYPVATQCHCGKCDSDSTDC 112
>gi|56118234 proline rich 6 [Homo sapiens]
Length = 272
Score = 34.3 bits (77), Expect = 0.050
Identities = 24/76 (31%), Positives = 29/76 (38%), Gaps = 9/76 (11%)
Query: 98 PVVSYAVALSCQCALCRRSTTDCGG--------PKDHP-LTCDDPRFQDSSSSKAPPPSL 148
P S A AL+ RRS + G P + P L PR Q+ + PPP L
Sbjct: 24 PAASAAAALAPSATRTRRSASQAGSKSQAVEKPPSEKPRLRRSSPRAQEEGPGEPPPPEL 83
Query: 149 PSPSRLPGPSDTPILP 164
P P TP P
Sbjct: 84 ALLPPPPPPPPTPATP 99
>gi|163914392 glioma tumor suppressor candidate region gene 1 [Homo
sapiens]
Length = 1560
Score = 34.3 bits (77), Expect = 0.050
Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
Query: 133 PRFQDSSSSKAPPPSLP--SPSRLPGPSDTPILP 164
P+ DS +S AP P +P +P + PGPS +P LP
Sbjct: 747 PQAPDSQASPAPAPQIPAAAPLKGPGPSSSPSLP 780
>gi|134031945 SCO-spondin [Homo sapiens]
Length = 5147
Score = 34.3 bits (77), Expect = 0.050
Identities = 25/76 (32%), Positives = 35/76 (46%), Gaps = 17/76 (22%)
Query: 49 VNTTICAGYCPTMTRVLQGVLPALPQV-----VCNYR-----DVRFESIRLPGCPRGVNP 98
V + C+GYCP+ T V+P P + C+YR VR ++R C G
Sbjct: 5072 VEVSYCSGYCPSSTH----VMPEEPYLQSQCDCCSYRLDPESPVRILNLR---CLGGHTE 5124
Query: 99 VVSYAVALSCQCALCR 114
V V SCQC+ C+
Sbjct: 5125 PVVLPVIHSCQCSSCQ 5140
Score = 28.9 bits (63), Expect = 2.1
Identities = 20/55 (36%), Positives = 23/55 (41%), Gaps = 8/55 (14%)
Query: 106 LSCQCALCRRSTTDCGGPKDHPLTCDDPRFQDSSSSKAPPPSLPSP--SRLPGPS 158
+SC C + C G D P D P PSLP+P S LPGPS
Sbjct: 1497 VSCVDGTCLGAIQLCDG------VWDCPDGADEGPGHCPLPSLPTPPASTLPGPS 1545
Score = 26.9 bits (58), Expect = 8.0
Identities = 26/83 (31%), Positives = 33/83 (39%), Gaps = 6/83 (7%)
Query: 69 LPALPQVVCNYRDVRFESIRLPGCPR--GVNPVVSYA-VALSCQCALCRRSTTDCGGPKD 125
LPA P +C+ + E L GC R G P ++ + SC L R T C P
Sbjct: 3226 LPATPTPLCSGPEAEEEPCLLQGCDRAGGWGPWGPWSHCSRSCGGGL-RSRTRACDQPPP 3284
Query: 126 HPL--TCDDPRFQDSSSSKAPPP 146
L C+ PR Q P P
Sbjct: 3285 QGLGDYCEGPRAQGEVCQALPCP 3307
>gi|38026934 Rho guanine nucleotide exchange factor (GEF) 11 isoform
2 [Homo sapiens]
Length = 1562
Score = 31.6 bits (70), Expect = 0.33
Identities = 15/42 (35%), Positives = 18/42 (42%)
Query: 116 STTDCGGPKDHPLTCDDPRFQDSSSSKAPPPSLPSPSRLPGP 157
S+ G + P PR S PPP LP P R+ GP
Sbjct: 125 SSMGISGLQQDPSPAGAPRITSVIPSPPPPPPLPPPQRITGP 166
>gi|7662086 Rho guanine nucleotide exchange factor (GEF) 11 isoform
1 [Homo sapiens]
Length = 1522
Score = 31.6 bits (70), Expect = 0.33
Identities = 15/42 (35%), Positives = 18/42 (42%)
Query: 116 STTDCGGPKDHPLTCDDPRFQDSSSSKAPPPSLPSPSRLPGP 157
S+ G + P PR S PPP LP P R+ GP
Sbjct: 125 SSMGISGLQQDPSPAGAPRITSVIPSPPPPPPLPPPQRITGP 166
>gi|21735550 mitogen-activated protein kinase kinase kinase 10 [Homo
sapiens]
Length = 954
Score = 31.6 bits (70), Expect = 0.33
Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 4/75 (5%)
Query: 90 PGCPRGVNPVVSYAVALSCQCALCRRST-TDCGGPKDHPLTCDDPRFQDSSSSKAPPPSL 148
P P G V + L+ L S+ +DC + + D + + ++ +PPPS
Sbjct: 724 PARPHGRREDVGPGLGLAPSATLVSLSSVSDCNSTRSLLRSDSD---EAAPAAPSPPPSP 780
Query: 149 PSPSRLPGPSDTPIL 163
P+P+ P PS P++
Sbjct: 781 PAPTPTPSPSTNPLV 795
>gi|10863911 serine protease inhibitor, Kazal type 2
(acrosin-trypsin inhibitor) [Homo sapiens]
Length = 84
Score = 31.6 bits (70), Expect = 0.33
Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 79 YRDVRFESIRLPGCPRGVNPVV-SYAVALSCQCALCRR 115
YR RLPGCPR NPV S + +C LC +
Sbjct: 31 YRTPNCSQYRLPGCPRHFNPVCGSDMSTYANECTLCMK 68
>gi|146134388 YLP motif containing 1 [Homo sapiens]
Length = 2146
Score = 30.8 bits (68), Expect = 0.56
Identities = 17/42 (40%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 123 PKDHPLTCDDPRFQDSSSSKAPPPSLPSPSRLPGPSDTPILP 164
P P + P S SS PPP LP PS L P+LP
Sbjct: 566 PPSLPTSVPPPGMPPSLSSAGPPPVLPPPS-LSSAGPPPVLP 606
>gi|113951734 steroid receptor RNA activator 1 [Homo sapiens]
Length = 236
Score = 30.4 bits (67), Expect = 0.73
Identities = 22/71 (30%), Positives = 27/71 (38%), Gaps = 7/71 (9%)
Query: 94 RGVNPVVSYAVALSCQCALCRRS--TTDCGGPKDHPLTCDDPRFQDSSSSKAPPPSLPSP 151
RG N ++ L Q RRS T P+D PR S +S PPP P P
Sbjct: 25 RGWNDPPQFSYGLQTQAGGPRRSLLTKRVAAPQD-----GSPRVPASETSPGPPPMGPPP 79
Query: 152 SRLPGPSDTPI 162
P P+
Sbjct: 80 PSSKAPRSPPV 90
>gi|14149904 anthrax toxin receptor 1 isoform 1 precursor [Homo
sapiens]
Length = 564
Score = 30.4 bits (67), Expect = 0.73
Identities = 14/38 (36%), Positives = 17/38 (44%)
Query: 127 PLTCDDPRFQDSSSSKAPPPSLPSPSRLPGPSDTPILP 164
P + P S+ PPP P P+R P PS P P
Sbjct: 525 PPSAPTPPIPSPPSTLPPPPQAPPPNRAPPPSRPPPRP 562
>gi|23397498 transmembrane protein 92 [Homo sapiens]
Length = 159
Score = 30.4 bits (67), Expect = 0.73
Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 6/60 (10%)
Query: 108 CQCALCRR----STTDCGGPKDHPLTCDDPRFQDSSSSKAPPPS--LPSPSRLPGPSDTP 161
C C CR + DC GP + P R + S S+ PP S + PS P P++ P
Sbjct: 78 CFCRNCREPEPDTPVDCRGPLELPSIIPPERVRVSLSAPPPPYSEVILKPSLGPTPTEPP 137
>gi|71274144 AT hook, DNA binding motif, containing 1 [Homo sapiens]
Length = 1603
Score = 30.4 bits (67), Expect = 0.73
Identities = 18/56 (32%), Positives = 24/56 (42%), Gaps = 5/56 (8%)
Query: 112 LCRRSTTDCG-----GPKDHPLTCDDPRFQDSSSSKAPPPSLPSPSRLPGPSDTPI 162
LCRR G GP+ L P ++ ++ PPP P P LPGP +
Sbjct: 393 LCRRRKAGRGRKADAGPEGRLLPLPMPTGLVAALAEPPPPPPPPPPALPGPGPVSV 448
>gi|161019170 mucin 5AC [Homo sapiens]
Length = 6207
Score = 29.6 bits (65), Expect = 1.2
Identities = 25/82 (30%), Positives = 35/82 (42%), Gaps = 5/82 (6%)
Query: 32 INATLAVEKEGCPVCITVNTTICAGYCPTMTRVLQGVLPALPQ-VVCNYRDVRFESIRLP 90
IN T+ + +GC VN T C G CP ++ Q C R V E++ L
Sbjct: 5999 INTTI-LWHQGCET--EVNITFCEGSCPGASKYSAEAQAMQHQCTCCQERRVHEETVPL- 6054
Query: 91 GCPRGVNPVVSYAVALSCQCAL 112
CP G + +Y A+ C L
Sbjct: 6055 HCPNGSAILHTYTHAVQVLCGL 6076
>gi|55742695 sterile alpha motif domain containing 4B [Homo sapiens]
Length = 694
Score = 29.6 bits (65), Expect = 1.2
Identities = 18/79 (22%), Positives = 30/79 (37%), Gaps = 12/79 (15%)
Query: 96 VNPVVSYAVALSCQCALCRRSTTDCGGPKDHPLTCDDPRFQDSSSSKA------------ 143
+ P+ +Y+V + A T G P + PL +P + K
Sbjct: 388 ITPIKAYSVLQATVAAATTTPTAKDGAPGEPPLPGAEPPLAHPGTDKGTEAKDPPAVENY 447
Query: 144 PPPSLPSPSRLPGPSDTPI 162
PPP P+P+ P+ P+
Sbjct: 448 PPPPAPAPTDGSEPAPAPV 466
>gi|116284392 mucin 2 precursor [Homo sapiens]
Length = 5179
Score = 29.6 bits (65), Expect = 1.2
Identities = 25/106 (23%), Positives = 35/106 (33%), Gaps = 7/106 (6%)
Query: 18 TWASKEPLRPRCRPINATLAVEKEGCPVCITVNTTICAGYCPTMTRVLQGVLPALPQVVC 77
T + R C + T V GC + +N C+G C T C
Sbjct: 5064 TCTPRNETRVPCSTVPVTTEVSYAGCTKTVLMNH--CSGSCGTFVMYSAKAQALDHSCSC 5121
Query: 78 NYRDVRFESIRLPGCPRGVNPVVSYAVALSCQCALCRRSTTDCGGP 123
+ + + CP G + +Y SCQC T CG P
Sbjct: 5122 CKEEKTSQREVVLSCPNGGSLTHTYTHIESCQC-----QDTVCGLP 5162
>gi|239749951 PREDICTED: similar to mucin 2 [Homo sapiens]
Length = 2639
Score = 29.6 bits (65), Expect = 1.2
Identities = 25/106 (23%), Positives = 35/106 (33%), Gaps = 7/106 (6%)
Query: 18 TWASKEPLRPRCRPINATLAVEKEGCPVCITVNTTICAGYCPTMTRVLQGVLPALPQVVC 77
T + R C + T V GC + +N C+G C T C
Sbjct: 2524 TCTPRNETRVPCSTVPVTTEVSYAGCTKTVLMNH--CSGSCGTFVMYSAKAQALDHSCSC 2581
Query: 78 NYRDVRFESIRLPGCPRGVNPVVSYAVALSCQCALCRRSTTDCGGP 123
+ + + CP G + +Y SCQC T CG P
Sbjct: 2582 CKEEKTSQREVVLSCPNGGSLTHTYTHIESCQC-----QDTVCGLP 2622
>gi|4758226 E2F transcription factor 2 [Homo sapiens]
Length = 437
Score = 29.6 bits (65), Expect = 1.2
Identities = 17/55 (30%), Positives = 22/55 (40%), Gaps = 5/55 (9%)
Query: 112 LCRRSTTDCGGPKDHPLT-----CDDPRFQDSSSSKAPPPSLPSPSRLPGPSDTP 161
LC + P + PL C P SSS P P+ S +P P+ TP
Sbjct: 302 LCPEEVQEPDSPSEEPLPSTSTLCPSPDSAQPSSSTDPSIMEPTASSVPAPAPTP 356
>gi|19924099 synapsin I isoform Ia [Homo sapiens]
Length = 705
Score = 29.6 bits (65), Expect = 1.2
Identities = 13/32 (40%), Positives = 15/32 (46%)
Query: 133 PRFQDSSSSKAPPPSLPSPSRLPGPSDTPILP 164
P+ Q S PP P P RLP P+ P P
Sbjct: 487 PQGQQHLSGLGPPAGSPLPQRLPSPTSAPQQP 518
>gi|19924097 synapsin I isoform Ib [Homo sapiens]
Length = 669
Score = 29.6 bits (65), Expect = 1.2
Identities = 13/32 (40%), Positives = 15/32 (46%)
Query: 133 PRFQDSSSSKAPPPSLPSPSRLPGPSDTPILP 164
P+ Q S PP P P RLP P+ P P
Sbjct: 487 PQGQQHLSGLGPPAGSPLPQRLPSPTSAPQQP 518
>gi|169163027 PREDICTED: similar to Putative acrosin-like protease
[Homo sapiens]
Length = 355
Score = 29.3 bits (64), Expect = 1.6
Identities = 15/39 (38%), Positives = 15/39 (38%)
Query: 123 PKDHPLTCDDPRFQDSSSSKAPPPSLPSPSRLPGPSDTP 161
P PL P Q PPP P PS LP P P
Sbjct: 264 PPPRPLPPRPPAAQPRPPPSPPPPPPPPPSPLPPPPPPP 302
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.322 0.138 0.454
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,488,017
Number of Sequences: 37866
Number of extensions: 470183
Number of successful extensions: 4086
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 67
Number of HSP's that attempted gapping in prelim test: 3840
Number of HSP's gapped (non-prelim): 304
length of query: 165
length of database: 18,247,518
effective HSP length: 94
effective length of query: 71
effective length of database: 14,688,114
effective search space: 1042856094
effective search space used: 1042856094
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.