Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 154426324
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|154426324 hypothetical protein LOC55049 isoform 1 [Homo
sapiens]
(201 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|154426324 hypothetical protein LOC55049 isoform 1 [Homo sapiens] 399 e-112
gi|154426266 hypothetical protein LOC55049 isoform 2 [Homo sapiens] 338 2e-93
gi|239757046 PREDICTED: similar to hCG1790759 [Homo sapiens] 32 0.28
gi|239751558 PREDICTED: similar to hCG1790759 [Homo sapiens] 32 0.28
gi|169212818 PREDICTED: similar to hCG1790759 [Homo sapiens] 32 0.28
gi|116174754 phospholipase A2, group IVD [Homo sapiens] 30 1.4
gi|169167792 PREDICTED: similar to hCG1745223 [Homo sapiens] 30 1.8
gi|88987622 PREDICTED: similar to hCG1745223 [Homo sapiens] 30 1.8
gi|93141029 paralemmin isoform 2 [Homo sapiens] 30 1.8
gi|93141031 paralemmin isoform 1 [Homo sapiens] 30 1.8
gi|148833506 obscurin, cytoskeletal calmodulin and titin-interac... 28 4.0
gi|106879206 chromosome 14 open reading frame 169 [Homo sapiens] 28 4.0
gi|32698866 spindle pole body component 24 homolog [Homo sapiens] 28 5.2
gi|28416436 ADP-ribosylation factor GTPase activating protein 1 ... 28 6.9
gi|8922652 ADP-ribosylation factor GTPase activating protein 1 i... 28 6.9
gi|51464815 PREDICTED: similar to hCG1745223 [Homo sapiens] 28 6.9
gi|239754468 PREDICTED: hypothetical protein [Homo sapiens] 27 9.0
gi|239753110 PREDICTED: doublecortin domain-containing protein E... 27 9.0
gi|239749023 PREDICTED: hypothetical protein XP_002346884 [Homo ... 27 9.0
gi|239747673 PREDICTED: doublecortin domain-containing protein E... 27 9.0
gi|239743042 PREDICTED: hypothetical protein XP_002342725 [Homo ... 27 9.0
gi|239741542 PREDICTED: doublecortin domain-containing protein E... 27 9.0
gi|21536357 TBP-associated factor 6 isoform delta [Homo sapiens] 27 9.0
gi|21536355 TBP-associated factor 6 isoform gamma [Homo sapiens] 27 9.0
gi|5032147 TBP-associated factor 6 isoform alpha [Homo sapiens] 27 9.0
gi|21536359 TBP-associated factor 6 isoform alpha [Homo sapiens] 27 9.0
gi|55743108 ATG16 autophagy related 16-like 2 [Homo sapiens] 27 9.0
>gi|154426324 hypothetical protein LOC55049 isoform 1 [Homo sapiens]
Length = 201
Score = 399 bits (1025), Expect = e-112
Identities = 201/201 (100%), Positives = 201/201 (100%)
Query: 1 MITETAAEPTVPAVPAAEEATEARGREEPAWPWKDAPIRTLVQRIHQLQAERAQGFRRLE 60
MITETAAEPTVPAVPAAEEATEARGREEPAWPWKDAPIRTLVQRIHQLQAERAQGFRRLE
Sbjct: 1 MITETAAEPTVPAVPAAEEATEARGREEPAWPWKDAPIRTLVQRIHQLQAERAQGFRRLE 60
Query: 61 EWLAPVQGLRAWGRGLRVPTCRRGHRQYLRSGPDYDFARYRSTVHGVTQAFAAASREVLA 120
EWLAPVQGLRAWGRGLRVPTCRRGHRQYLRSGPDYDFARYRSTVHGVTQAFAAASREVLA
Sbjct: 61 EWLAPVQGLRAWGRGLRVPTCRRGHRQYLRSGPDYDFARYRSTVHGVTQAFAAASREVLA 120
Query: 121 VEAELGGPRRQPLLAGHVRSLQELEQTRLGTVALLQLMETPELAGQEDAVRMQQLKMKVI 180
VEAELGGPRRQPLLAGHVRSLQELEQTRLGTVALLQLMETPELAGQEDAVRMQQLKMKVI
Sbjct: 121 VEAELGGPRRQPLLAGHVRSLQELEQTRLGTVALLQLMETPELAGQEDAVRMQQLKMKVI 180
Query: 181 KTMEAISEVLQDLRFDAESAE 201
KTMEAISEVLQDLRFDAESAE
Sbjct: 181 KTMEAISEVLQDLRFDAESAE 201
>gi|154426266 hypothetical protein LOC55049 isoform 2 [Homo sapiens]
Length = 179
Score = 338 bits (866), Expect = 2e-93
Identities = 179/201 (89%), Positives = 179/201 (89%), Gaps = 22/201 (10%)
Query: 1 MITETAAEPTVPAVPAAEEATEARGREEPAWPWKDAPIRTLVQRIHQLQAERAQGFRRLE 60
MITETAAEPTVPAVPAAEEATEARGREEPAWPWKDAPIRTLVQRIHQLQAERAQGFRRLE
Sbjct: 1 MITETAAEPTVPAVPAAEEATEARGREEPAWPWKDAPIRTLVQRIHQLQAERAQGFRRLE 60
Query: 61 EWLAPVQGLRAWGRGLRVPTCRRGHRQYLRSGPDYDFARYRSTVHGVTQAFAAASREVLA 120
E GHRQYLRSGPDYDFARYRSTVHGVTQAFAAASREVLA
Sbjct: 61 E----------------------GHRQYLRSGPDYDFARYRSTVHGVTQAFAAASREVLA 98
Query: 121 VEAELGGPRRQPLLAGHVRSLQELEQTRLGTVALLQLMETPELAGQEDAVRMQQLKMKVI 180
VEAELGGPRRQPLLAGHVRSLQELEQTRLGTVALLQLMETPELAGQEDAVRMQQLKMKVI
Sbjct: 99 VEAELGGPRRQPLLAGHVRSLQELEQTRLGTVALLQLMETPELAGQEDAVRMQQLKMKVI 158
Query: 181 KTMEAISEVLQDLRFDAESAE 201
KTMEAISEVLQDLRFDAESAE
Sbjct: 159 KTMEAISEVLQDLRFDAESAE 179
>gi|239757046 PREDICTED: similar to hCG1790759 [Homo sapiens]
Length = 737
Score = 32.3 bits (72), Expect = 0.28
Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 6/51 (11%)
Query: 1 MITETAAEPTVPAVPAAEEATEARGREEPAWPWKDAPIRTLVQRIHQLQAE 51
++T +AA P PA PA +A + RG P API LV R+H Q E
Sbjct: 154 LLTPSAARPDPPAPPA--QAWDRRGSVTPT----GAPIWELVSRVHGYQKE 198
>gi|239751558 PREDICTED: similar to hCG1790759 [Homo sapiens]
Length = 771
Score = 32.3 bits (72), Expect = 0.28
Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 6/51 (11%)
Query: 1 MITETAAEPTVPAVPAAEEATEARGREEPAWPWKDAPIRTLVQRIHQLQAE 51
++T +AA P PA PA +A + RG P API LV R+H Q E
Sbjct: 188 LLTPSAARPDPPAPPA--QAWDRRGSVTPT----GAPIWELVSRVHGYQKE 232
>gi|169212818 PREDICTED: similar to hCG1790759 [Homo sapiens]
Length = 771
Score = 32.3 bits (72), Expect = 0.28
Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 6/51 (11%)
Query: 1 MITETAAEPTVPAVPAAEEATEARGREEPAWPWKDAPIRTLVQRIHQLQAE 51
++T +AA P PA PA +A + RG P API LV R+H Q E
Sbjct: 188 LLTPSAARPDPPAPPA--QAWDRRGSVTPT----GAPIWELVSRVHGYQKE 232
>gi|116174754 phospholipase A2, group IVD [Homo sapiens]
Length = 818
Score = 30.0 bits (66), Expect = 1.4
Identities = 24/74 (32%), Positives = 31/74 (41%)
Query: 57 RRLEEWLAPVQGLRAWGRGLRVPTCRRGHRQYLRSGPDYDFARYRSTVHGVTQAFAAASR 116
R L+E PV G+ A G G R T GH L+ D Y S + G T A
Sbjct: 313 RDLQEDEVPVVGIMATGGGARAMTSLYGHLLALQKLGLLDCVTYFSGISGSTWTMAHLYG 372
Query: 117 EVLAVEAELGGPRR 130
+ + +L GP R
Sbjct: 373 DPEWSQRDLEGPIR 386
>gi|169167792 PREDICTED: similar to hCG1745223 [Homo sapiens]
Length = 320
Score = 29.6 bits (65), Expect = 1.8
Identities = 26/89 (29%), Positives = 38/89 (42%), Gaps = 3/89 (3%)
Query: 77 RVPTCRRGHRQYLRSGPDYDFARYRSTVHGVTQAFAAASREVLAVEAELGGPRRQPLLAG 136
R PTC R R++LR+ P + R + AF A R GGP P A
Sbjct: 133 RTPTCPRRQRRWLRTTP-HPPPPTRQGSREMAGAFLVAPRP--PYSRSPGGPESAPTPAS 189
Query: 137 HVRSLQELEQTRLGTVALLQLMETPELAG 165
+ L+ +Q L + L ++ E+AG
Sbjct: 190 VLPELRRGKQDLLSADSGLPAVDQGEVAG 218
>gi|88987622 PREDICTED: similar to hCG1745223 [Homo sapiens]
Length = 320
Score = 29.6 bits (65), Expect = 1.8
Identities = 26/89 (29%), Positives = 38/89 (42%), Gaps = 3/89 (3%)
Query: 77 RVPTCRRGHRQYLRSGPDYDFARYRSTVHGVTQAFAAASREVLAVEAELGGPRRQPLLAG 136
R PTC R R++LR+ P + R + AF A R GGP P A
Sbjct: 133 RTPTCPRRQRRWLRTTP-HPPPPTRQGSREMAGAFLVAPRP--PYSRSPGGPESAPTPAS 189
Query: 137 HVRSLQELEQTRLGTVALLQLMETPELAG 165
+ L+ +Q L + L ++ E+AG
Sbjct: 190 VLPELRRGKQDLLSADSGLPAVDQGEVAG 218
>gi|93141029 paralemmin isoform 2 [Homo sapiens]
Length = 343
Score = 29.6 bits (65), Expect = 1.8
Identities = 17/31 (54%), Positives = 19/31 (61%), Gaps = 3/31 (9%)
Query: 1 MITETAAEPTVPAVP---AAEEATEARGREE 28
++ E AAEP PA P AAE TEA REE
Sbjct: 285 VVIEDAAEPKEPAPPNGSAAEPPTEAASREE 315
>gi|93141031 paralemmin isoform 1 [Homo sapiens]
Length = 387
Score = 29.6 bits (65), Expect = 1.8
Identities = 17/31 (54%), Positives = 19/31 (61%), Gaps = 3/31 (9%)
Query: 1 MITETAAEPTVPAVP---AAEEATEARGREE 28
++ E AAEP PA P AAE TEA REE
Sbjct: 329 VVIEDAAEPKEPAPPNGSAAEPPTEAASREE 359
>gi|148833506 obscurin, cytoskeletal calmodulin and titin-interacting
RhoGEF isoform b [Homo sapiens]
Length = 7968
Score = 28.5 bits (62), Expect = 4.0
Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 12/71 (16%)
Query: 6 AAEPTVPAVPAAEEATEARGREEPAWPW-------KDAPIRTLVQRIHQLQAERAQGFRR 58
+A+P P+ A EE E EP WPW I + + L AE A G +R
Sbjct: 7331 SAQPEPPSPMAEEELAEF---PEPTWPWPGELGPHAGLEITEESEDVDALLAEAAVGRKR 7387
Query: 59 LEEWLAPVQGL 69
+W +P + L
Sbjct: 7388 --KWSSPSRSL 7396
>gi|106879206 chromosome 14 open reading frame 169 [Homo sapiens]
Length = 641
Score = 28.5 bits (62), Expect = 4.0
Identities = 15/55 (27%), Positives = 29/55 (52%), Gaps = 5/55 (9%)
Query: 12 PAVPAAEEATEARGREEPAWPWKDAPIRTLVQRIHQLQAERAQGFRRLEEWLAPV 66
PA + + G EPAW D+P+R ++ ++++ + R + R E +AP+
Sbjct: 164 PATASGPQVDNTGG--EPAW---DSPLRRVLAELNRIPSSRRRAARLFEWLIAPM 213
>gi|32698866 spindle pole body component 24 homolog [Homo sapiens]
Length = 197
Score = 28.1 bits (61), Expect = 5.2
Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 12/78 (15%)
Query: 116 REVLAVEAELGGPRRQPLLAGHVRSLQELEQTRLGTVALLQLMETPELAGQEDAVRMQQL 175
RE+L +E E+ Q LL EQ G V L QL + AG+ED R++
Sbjct: 53 REILTMEKEVA----QSLLNAK-------EQVHQGGVELQQLEAGLQEAGEED-TRLKAS 100
Query: 176 KMKVIKTMEAISEVLQDL 193
+++ + +E + E+ DL
Sbjct: 101 LLQLTRELEELKEIEADL 118
>gi|28416436 ADP-ribosylation factor GTPase activating protein 1
isoform b [Homo sapiens]
Length = 414
Score = 27.7 bits (60), Expect = 6.9
Identities = 30/115 (26%), Positives = 46/115 (40%), Gaps = 13/115 (11%)
Query: 14 VPAAEEATEARGREEPAWPWKDAPIRTLVQRIH----QLQAERAQGFRRLEEWL------ 63
V A E E PA W RTL +H Q Q+ A + E+WL
Sbjct: 115 VVALAEGREWSLESSPAQNWTPPQPRTLPSMVHRVSGQPQSVTASSDKAFEDWLNDDLGS 174
Query: 64 -APVQGLRAWGRGLRVPTCRRGHRQYLRSGPDYDFARYRSTVHGVTQAFAAASRE 117
QG R G G P ++ +L + ++ + S G ++ FA+A++E
Sbjct: 175 YQGAQGNRYVGFG-NTPPPQKKEDDFLNNAMSSLYSGWSSFTTGASR-FASAAKE 227
>gi|8922652 ADP-ribosylation factor GTPase activating protein 1
isoform a [Homo sapiens]
Length = 406
Score = 27.7 bits (60), Expect = 6.9
Identities = 30/115 (26%), Positives = 46/115 (40%), Gaps = 13/115 (11%)
Query: 14 VPAAEEATEARGREEPAWPWKDAPIRTLVQRIH----QLQAERAQGFRRLEEWL------ 63
V A E E PA W RTL +H Q Q+ A + E+WL
Sbjct: 115 VVALAEGREWSLESSPAQNWTPPQPRTLPSMVHRVSGQPQSVTASSDKAFEDWLNDDLGS 174
Query: 64 -APVQGLRAWGRGLRVPTCRRGHRQYLRSGPDYDFARYRSTVHGVTQAFAAASRE 117
QG R G G P ++ +L + ++ + S G ++ FA+A++E
Sbjct: 175 YQGAQGNRYVGFG-NTPPPQKKEDDFLNNAMSSLYSGWSSFTTGASR-FASAAKE 227
>gi|51464815 PREDICTED: similar to hCG1745223 [Homo sapiens]
Length = 319
Score = 27.7 bits (60), Expect = 6.9
Identities = 25/87 (28%), Positives = 37/87 (42%), Gaps = 3/87 (3%)
Query: 79 PTCRRGHRQYLRSGPDYDFARYRSTVHGVTQAFAAASREVLAVEAELGGPRRQPLLAGHV 138
PTC R R++LR+ P + R + AF A R GGP P A +
Sbjct: 134 PTCPRRQRRWLRTTP-HPPPPTRQGSREMAGAFLVAPRP--PYSRSPGGPESAPTPASVL 190
Query: 139 RSLQELEQTRLGTVALLQLMETPELAG 165
L+ +Q L + L ++ E+AG
Sbjct: 191 PELRRGKQDLLSADSGLPAVDQGEVAG 217
>gi|239754468 PREDICTED: hypothetical protein [Homo sapiens]
Length = 146
Score = 27.3 bits (59), Expect = 9.0
Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 9/60 (15%)
Query: 50 AERAQGFRRLEEWLAPVQGLRAWGRGLRVPTCRRGHRQYLRSGPDYDFARYRSTVHGVTQ 109
+ RA+ R WLA A RGL+V C GHR+ RS P+ R+ VHG ++
Sbjct: 83 SSRARPSRGERPWLA------AQLRGLQVGQCCWGHRR--RSAPE-PVPAVRTRVHGASR 133
>gi|239753110 PREDICTED: doublecortin domain-containing protein
ENSP00000382097-like [Homo sapiens]
Length = 530
Score = 27.3 bits (59), Expect = 9.0
Identities = 26/84 (30%), Positives = 33/84 (39%), Gaps = 12/84 (14%)
Query: 13 AVPAAEEATEARGREEPAWPWKDAPIRTL----------VQRIHQLQAERAQGFRRLEEW 62
+ PA+EE A G P+ P P +T+ V + L RA F L E
Sbjct: 60 SAPASEERGAAMGTRGPSAPVDTTPAKTIVVYRNGDPFYVGKKFVLSRRRAATFEALLEQ 119
Query: 63 LAPVQGLRAWGRGLRVPTCRRGHR 86
L + R L PT RGHR
Sbjct: 120 LTEQVDVPFGVRRLFTPT--RGHR 141
>gi|239749023 PREDICTED: hypothetical protein XP_002346884 [Homo
sapiens]
Length = 159
Score = 27.3 bits (59), Expect = 9.0
Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 9/60 (15%)
Query: 50 AERAQGFRRLEEWLAPVQGLRAWGRGLRVPTCRRGHRQYLRSGPDYDFARYRSTVHGVTQ 109
+ RA+ R WLA A RGL+V C GHR+ RS P+ R+ VHG ++
Sbjct: 96 SSRARPSRGERPWLA------AQLRGLQVGQCCWGHRR--RSAPE-PVPAVRTRVHGASR 146
>gi|239747673 PREDICTED: doublecortin domain-containing protein
ENSP00000382097-like [Homo sapiens]
Length = 714
Score = 27.3 bits (59), Expect = 9.0
Identities = 26/84 (30%), Positives = 33/84 (39%), Gaps = 12/84 (14%)
Query: 13 AVPAAEEATEARGREEPAWPWKDAPIRTL----------VQRIHQLQAERAQGFRRLEEW 62
+ PA+EE A G P+ P P +T+ V + L RA F L E
Sbjct: 166 SAPASEERGAAMGTRGPSAPVDTTPAKTIVVYRNGDPFYVGKKFVLSRRRAATFEALLEQ 225
Query: 63 LAPVQGLRAWGRGLRVPTCRRGHR 86
L + R L PT RGHR
Sbjct: 226 LTEQVDVPFGVRRLFTPT--RGHR 247
>gi|239743042 PREDICTED: hypothetical protein XP_002342725 [Homo
sapiens]
Length = 159
Score = 27.3 bits (59), Expect = 9.0
Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 9/60 (15%)
Query: 50 AERAQGFRRLEEWLAPVQGLRAWGRGLRVPTCRRGHRQYLRSGPDYDFARYRSTVHGVTQ 109
+ RA+ R WLA A RGL+V C GHR+ RS P+ R+ VHG ++
Sbjct: 96 SSRARPSRGERPWLA------AQLRGLQVGQCCWGHRR--RSAPE-PVPAVRTRVHGASR 146
>gi|239741542 PREDICTED: doublecortin domain-containing protein
ENSP00000382097-like [Homo sapiens]
Length = 510
Score = 27.3 bits (59), Expect = 9.0
Identities = 26/84 (30%), Positives = 33/84 (39%), Gaps = 12/84 (14%)
Query: 13 AVPAAEEATEARGREEPAWPWKDAPIRTL----------VQRIHQLQAERAQGFRRLEEW 62
+ PA+EE A G P+ P P +T+ V + L RA F L E
Sbjct: 166 SAPASEERGAAMGTRGPSAPVDTTPAKTIVVYRNGDPFYVGKKFVLSRRRAATFEALLEQ 225
Query: 63 LAPVQGLRAWGRGLRVPTCRRGHR 86
L + R L PT RGHR
Sbjct: 226 LTEQVDVPFGVRRLFTPT--RGHR 247
>gi|21536357 TBP-associated factor 6 isoform delta [Homo sapiens]
Length = 667
Score = 27.3 bits (59), Expect = 9.0
Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 13/69 (18%)
Query: 6 AAEPTVPAVPAAEE------------ATEARGREEPAWPWKD-APIRTLVQRIHQLQAER 52
A EP A P EE + +G+E+ A P + AP+R + IH+L E+
Sbjct: 151 ATEPLKSAKPGQEEDGPLKGKGQGATTADGKGKEKKAPPLLEGAPLRLKPRSIHELSVEQ 210
Query: 53 AQGFRRLEE 61
++ + E
Sbjct: 211 QLYYKEITE 219
>gi|21536355 TBP-associated factor 6 isoform gamma [Homo sapiens]
Length = 667
Score = 27.3 bits (59), Expect = 9.0
Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 13/69 (18%)
Query: 6 AAEPTVPAVPAAEE------------ATEARGREEPAWPWKD-APIRTLVQRIHQLQAER 52
A EP A P EE + +G+E+ A P + AP+R + IH+L E+
Sbjct: 161 ATEPLKSAKPGQEEDGPLKGKGQGATTADGKGKEKKAPPLLEGAPLRLKPRSIHELSVEQ 220
Query: 53 AQGFRRLEE 61
++ + E
Sbjct: 221 QLYYKEITE 229
>gi|5032147 TBP-associated factor 6 isoform alpha [Homo sapiens]
Length = 677
Score = 27.3 bits (59), Expect = 9.0
Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 13/69 (18%)
Query: 6 AAEPTVPAVPAAEE------------ATEARGREEPAWPWKD-APIRTLVQRIHQLQAER 52
A EP A P EE + +G+E+ A P + AP+R + IH+L E+
Sbjct: 161 ATEPLKSAKPGQEEDGPLKGKGQGATTADGKGKEKKAPPLLEGAPLRLKPRSIHELSVEQ 220
Query: 53 AQGFRRLEE 61
++ + E
Sbjct: 221 QLYYKEITE 229
>gi|21536359 TBP-associated factor 6 isoform alpha [Homo sapiens]
Length = 677
Score = 27.3 bits (59), Expect = 9.0
Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 13/69 (18%)
Query: 6 AAEPTVPAVPAAEE------------ATEARGREEPAWPWKD-APIRTLVQRIHQLQAER 52
A EP A P EE + +G+E+ A P + AP+R + IH+L E+
Sbjct: 161 ATEPLKSAKPGQEEDGPLKGKGQGATTADGKGKEKKAPPLLEGAPLRLKPRSIHELSVEQ 220
Query: 53 AQGFRRLEE 61
++ + E
Sbjct: 221 QLYYKEITE 229
>gi|55743108 ATG16 autophagy related 16-like 2 [Homo sapiens]
Length = 619
Score = 27.3 bits (59), Expect = 9.0
Identities = 42/160 (26%), Positives = 62/160 (38%), Gaps = 18/160 (11%)
Query: 19 EATEARGREEPAWPWKDAPIRTLVQRIHQLQAERAQGFRRLEEWLAPVQGLRAWGRGLRV 78
E A G E + + + L R+ QL+ RAQ +++EEW A RA LR
Sbjct: 113 EKGAALGTLESELQQRQSRLAALEARVAQLREARAQQAQQVEEWRAQNAVQRAAYEALRA 172
Query: 79 PT-CRRGHRQYLRSGPDYDFARYRSTVHGVTQAFAAASREVLAVEAELGGPRRQPLLAGH 137
R + L+ R + + Q A A A E L RR+ A
Sbjct: 173 HVGLREAALRRLQE-------EARDLLERLVQRKARA-----AAERNLRNERRE--RAKQ 218
Query: 138 VRSLQELEQTRLGTVALLQLMETPELAGQEDAVRMQQLKM 177
R QEL++ TV+ + E P+ G R + L +
Sbjct: 219 ARVSQELKKAAKRTVS---ISEGPDTLGDGMRERRETLAL 255
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.131 0.384
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,138,349
Number of Sequences: 37866
Number of extensions: 298367
Number of successful extensions: 1227
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 1221
Number of HSP's gapped (non-prelim): 29
length of query: 201
length of database: 18,247,518
effective HSP length: 97
effective length of query: 104
effective length of database: 14,574,516
effective search space: 1515749664
effective search space used: 1515749664
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.