Guide to the Human Genome
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Name: LOC100289601 Sequence: fasta or formatted (159aa) NCBI GI: 239743042
Description:

PREDICTED: hypothetical protein XP_002342725

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.7         17           3
 C cysteine            3.1          5           2
 D aspartate           0.6          1           1
 E glutamate           3.1          5           1
 F phenylalanine       2.5          4           1
 G glycine            11.9         19           1
 H histidine           2.5          4           1
 I isoleucine          1.9          3           2
 K lysine              0.0          0           0
 L leucine             7.5         12           1
 M methionine          0.6          1           1
 N asparagine          0.6          1           1
 P proline            13.8         22           3
 Q glutamine           4.4          7           1
 R arginine           19.5         31           4
 S serine              6.9         11           2
 T threonine           3.1          5           1
 V valine              5.0          8           2
 W tryptophan          1.9          3           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002342725 
LOC100290381          1.000   PREDICTED: hypothetical protein XP_002346884 
LOC100293385          0.840   PREDICTED: hypothetical protein 
LOC100291136          0.058   PREDICTED: hypothetical protein XP_002347630 
LOC100287129          0.058   PREDICTED: hypothetical protein XP_002343480 
SRRM1                 0.051   serine/arginine repetitive matrix 1 
LOC729575             0.048   PREDICTED: hypothetical protein 
LOC100288110          0.048   PREDICTED: hypothetical protein 
LOC100288110          0.048   PREDICTED: hypothetical protein XP_002343007 
ZNF716                0.045   PREDICTED: zinc finger protein 716 
LOC100290769          0.045   PREDICTED: hypothetical protein XP_002346861 
LOC100287407          0.045   PREDICTED: hypothetical protein XP_002342704 
PRR12                 0.045   proline rich 12 
LOC100130431          0.045   PREDICTED: hypothetical protein 
LOC100130431          0.045   PREDICTED: hypothetical protein 
LOC100130431          0.045   PREDICTED: hypothetical protein 
KIAA0368              0.042   KIAA0368 protein 
SORCS2                0.038   VPS10 domain receptor protein SORCS 2 
ZBTB22                0.038   zinc finger and BTB domain containing 22 
ZBTB22                0.038   zinc finger and BTB domain containing 22 
FLJ22184              0.038   PREDICTED: hypothetical protein LOC80164 
DDN                   0.038   dendrin 
LOC401399             0.038   hypothetical protein LOC401399 
LOC100292745          0.038   PREDICTED: hypothetical protein 
LOC100290074          0.038   PREDICTED: hypothetical protein XP_002346855 
LOC100287034          0.038   PREDICTED: hypothetical protein XP_002342693 
APC2                  0.038   adenomatosis polyposis coli 2 
C10orf95              0.035   hypothetical protein LOC79946 
LOC100293438          0.035   PREDICTED: hypothetical protein 
LOC645321             0.035   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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