BLASTP 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|15426252 chorionic gonadotropin, beta polypeptide 8 precursor [Homo sapiens] (165 letters) Database: hs.faa 37,866 sequences; 18,247,518 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|4502789 chorionic gonadotropin beta 3 subunit precursor [Homo... 350 3e-97 gi|15451748 chorionic gonadotropin, beta polypeptide 5 precursor... 350 3e-97 gi|15426252 chorionic gonadotropin, beta polypeptide 8 precursor... 350 3e-97 gi|15451750 chorionic gonadotropin, beta polypeptide 7 precursor... 342 7e-95 gi|132566538 chorionic gonadotropin, beta polypeptide 2 [Homo sa... 338 1e-93 gi|132566537 chorionic gonadotropin, beta polypeptide 1 [Homo sa... 322 7e-89 gi|4504989 luteinizing hormone beta subunit precursor [Homo sapi... 248 1e-66 gi|115430099 thyroid stimulating hormone, beta precursor [Homo s... 96 1e-20 gi|66528995 follicle stimulating hormone, beta polypeptide precu... 86 1e-17 gi|4503791 follicle stimulating hormone, beta polypeptide precur... 86 1e-17 gi|56118234 proline rich 6 [Homo sapiens] 34 0.050 gi|163914392 glioma tumor suppressor candidate region gene 1 [Ho... 34 0.050 gi|134031945 SCO-spondin [Homo sapiens] 34 0.050 gi|38026934 Rho guanine nucleotide exchange factor (GEF) 11 isof... 32 0.33 gi|7662086 Rho guanine nucleotide exchange factor (GEF) 11 isofo... 32 0.33 gi|21735550 mitogen-activated protein kinase kinase kinase 10 [H... 32 0.33 gi|10863911 serine protease inhibitor, Kazal type 2 (acrosin-try... 32 0.33 gi|146134388 YLP motif containing 1 [Homo sapiens] 31 0.56 gi|113951734 steroid receptor RNA activator 1 [Homo sapiens] 30 0.73 gi|14149904 anthrax toxin receptor 1 isoform 1 precursor [Homo s... 30 0.73 gi|23397498 transmembrane protein 92 [Homo sapiens] 30 0.73 gi|71274144 AT hook, DNA binding motif, containing 1 [Homo sapiens] 30 0.73 gi|161019170 mucin 5AC [Homo sapiens] 30 1.2 gi|55742695 sterile alpha motif domain containing 4B [Homo sapiens] 30 1.2 gi|116284392 mucin 2 precursor [Homo sapiens] 30 1.2 gi|239749951 PREDICTED: similar to mucin 2 [Homo sapiens] 30 1.2 gi|4758226 E2F transcription factor 2 [Homo sapiens] 30 1.2 gi|19924099 synapsin I isoform Ia [Homo sapiens] 30 1.2 gi|19924097 synapsin I isoform Ib [Homo sapiens] 30 1.2 gi|169163027 PREDICTED: similar to Putative acrosin-like proteas... 29 1.6 >gi|4502789 chorionic gonadotropin beta 3 subunit precursor [Homo sapiens] Length = 165 Score = 350 bits (898), Expect = 3e-97 Identities = 165/165 (100%), Positives = 165/165 (100%) Query: 1 MEMFQGLLLLLLLSMGGTWASKEPLRPRCRPINATLAVEKEGCPVCITVNTTICAGYCPT 60 MEMFQGLLLLLLLSMGGTWASKEPLRPRCRPINATLAVEKEGCPVCITVNTTICAGYCPT Sbjct: 1 MEMFQGLLLLLLLSMGGTWASKEPLRPRCRPINATLAVEKEGCPVCITVNTTICAGYCPT 60 Query: 61 MTRVLQGVLPALPQVVCNYRDVRFESIRLPGCPRGVNPVVSYAVALSCQCALCRRSTTDC 120 MTRVLQGVLPALPQVVCNYRDVRFESIRLPGCPRGVNPVVSYAVALSCQCALCRRSTTDC Sbjct: 61 MTRVLQGVLPALPQVVCNYRDVRFESIRLPGCPRGVNPVVSYAVALSCQCALCRRSTTDC 120 Query: 121 GGPKDHPLTCDDPRFQDSSSSKAPPPSLPSPSRLPGPSDTPILPQ 165 GGPKDHPLTCDDPRFQDSSSSKAPPPSLPSPSRLPGPSDTPILPQ Sbjct: 121 GGPKDHPLTCDDPRFQDSSSSKAPPPSLPSPSRLPGPSDTPILPQ 165 >gi|15451748 chorionic gonadotropin, beta polypeptide 5 precursor [Homo sapiens] Length = 165 Score = 350 bits (898), Expect = 3e-97 Identities = 165/165 (100%), Positives = 165/165 (100%) Query: 1 MEMFQGLLLLLLLSMGGTWASKEPLRPRCRPINATLAVEKEGCPVCITVNTTICAGYCPT 60 MEMFQGLLLLLLLSMGGTWASKEPLRPRCRPINATLAVEKEGCPVCITVNTTICAGYCPT Sbjct: 1 MEMFQGLLLLLLLSMGGTWASKEPLRPRCRPINATLAVEKEGCPVCITVNTTICAGYCPT 60 Query: 61 MTRVLQGVLPALPQVVCNYRDVRFESIRLPGCPRGVNPVVSYAVALSCQCALCRRSTTDC 120 MTRVLQGVLPALPQVVCNYRDVRFESIRLPGCPRGVNPVVSYAVALSCQCALCRRSTTDC Sbjct: 61 MTRVLQGVLPALPQVVCNYRDVRFESIRLPGCPRGVNPVVSYAVALSCQCALCRRSTTDC 120 Query: 121 GGPKDHPLTCDDPRFQDSSSSKAPPPSLPSPSRLPGPSDTPILPQ 165 GGPKDHPLTCDDPRFQDSSSSKAPPPSLPSPSRLPGPSDTPILPQ Sbjct: 121 GGPKDHPLTCDDPRFQDSSSSKAPPPSLPSPSRLPGPSDTPILPQ 165 >gi|15426252 chorionic gonadotropin, beta polypeptide 8 precursor [Homo sapiens] Length = 165 Score = 350 bits (898), Expect = 3e-97 Identities = 165/165 (100%), Positives = 165/165 (100%) Query: 1 MEMFQGLLLLLLLSMGGTWASKEPLRPRCRPINATLAVEKEGCPVCITVNTTICAGYCPT 60 MEMFQGLLLLLLLSMGGTWASKEPLRPRCRPINATLAVEKEGCPVCITVNTTICAGYCPT Sbjct: 1 MEMFQGLLLLLLLSMGGTWASKEPLRPRCRPINATLAVEKEGCPVCITVNTTICAGYCPT 60 Query: 61 MTRVLQGVLPALPQVVCNYRDVRFESIRLPGCPRGVNPVVSYAVALSCQCALCRRSTTDC 120 MTRVLQGVLPALPQVVCNYRDVRFESIRLPGCPRGVNPVVSYAVALSCQCALCRRSTTDC Sbjct: 61 MTRVLQGVLPALPQVVCNYRDVRFESIRLPGCPRGVNPVVSYAVALSCQCALCRRSTTDC 120 Query: 121 GGPKDHPLTCDDPRFQDSSSSKAPPPSLPSPSRLPGPSDTPILPQ 165 GGPKDHPLTCDDPRFQDSSSSKAPPPSLPSPSRLPGPSDTPILPQ Sbjct: 121 GGPKDHPLTCDDPRFQDSSSSKAPPPSLPSPSRLPGPSDTPILPQ 165 >gi|15451750 chorionic gonadotropin, beta polypeptide 7 precursor [Homo sapiens] Length = 165 Score = 342 bits (878), Expect = 7e-95 Identities = 162/165 (98%), Positives = 163/165 (98%) Query: 1 MEMFQGLLLLLLLSMGGTWASKEPLRPRCRPINATLAVEKEGCPVCITVNTTICAGYCPT 60 MEMFQGLLLLLLLSMGGTWAS+E LRPRCRPINATLAVEKEGCPVCITVNTTICAGYCPT Sbjct: 1 MEMFQGLLLLLLLSMGGTWASREMLRPRCRPINATLAVEKEGCPVCITVNTTICAGYCPT 60 Query: 61 MTRVLQGVLPALPQVVCNYRDVRFESIRLPGCPRGVNPVVSYAVALSCQCALCRRSTTDC 120 MTRVLQGVLPALPQVVCNYRDVRFESIRLPGCPRGVNPVVSYAVALSCQCALCRRSTTDC Sbjct: 61 MTRVLQGVLPALPQVVCNYRDVRFESIRLPGCPRGVNPVVSYAVALSCQCALCRRSTTDC 120 Query: 121 GGPKDHPLTCDDPRFQDSSSSKAPPPSLPSPSRLPGPSDTPILPQ 165 GGPKDHPLTCDDPRFQ SSSSKAPPPSLPSPSRLPGPSDTPILPQ Sbjct: 121 GGPKDHPLTCDDPRFQASSSSKAPPPSLPSPSRLPGPSDTPILPQ 165 >gi|132566538 chorionic gonadotropin, beta polypeptide 2 [Homo sapiens] Length = 163 Score = 338 bits (868), Expect = 1e-93 Identities = 160/163 (98%), Positives = 161/163 (98%) Query: 3 MFQGLLLLLLLSMGGTWASKEPLRPRCRPINATLAVEKEGCPVCITVNTTICAGYCPTMT 62 M +GLLLLLLLSMGGTWASKEPLRPRCRPINATLAVEKEGCPVCITVNTTICAGYCPTMT Sbjct: 1 MSKGLLLLLLLSMGGTWASKEPLRPRCRPINATLAVEKEGCPVCITVNTTICAGYCPTMT 60 Query: 63 RVLQGVLPALPQVVCNYRDVRFESIRLPGCPRGVNPVVSYAVALSCQCALCRRSTTDCGG 122 RVLQGVLPALPQVVCNYRDVRFESIRLPGCPRGVNPVVSYAVALSCQCALCRRSTTDCGG Sbjct: 61 RVLQGVLPALPQVVCNYRDVRFESIRLPGCPRGVNPVVSYAVALSCQCALCRRSTTDCGG 120 Query: 123 PKDHPLTCDDPRFQDSSSSKAPPPSLPSPSRLPGPSDTPILPQ 165 PKDHPLTCDDPRFQ SSSSKAPPPSLPSPSRLPGPSDTPILPQ Sbjct: 121 PKDHPLTCDDPRFQASSSSKAPPPSLPSPSRLPGPSDTPILPQ 163 >gi|132566537 chorionic gonadotropin, beta polypeptide 1 [Homo sapiens] Length = 155 Score = 322 bits (826), Expect = 7e-89 Identities = 152/155 (98%), Positives = 153/155 (98%) Query: 3 MFQGLLLLLLLSMGGTWASKEPLRPRCRPINATLAVEKEGCPVCITVNTTICAGYCPTMT 62 M + LLLLLLLSMGGTWASKEPLRPRCRPINATLAVEKEGCPVCITVNTTICAGYCPTMT Sbjct: 1 MSKRLLLLLLLSMGGTWASKEPLRPRCRPINATLAVEKEGCPVCITVNTTICAGYCPTMT 60 Query: 63 RVLQGVLPALPQVVCNYRDVRFESIRLPGCPRGVNPVVSYAVALSCQCALCRRSTTDCGG 122 RVLQGVLPALPQVVCNYRDVRFESIRLPGCPRGVNPVVSYAVALSCQCALCRRSTTDCGG Sbjct: 61 RVLQGVLPALPQVVCNYRDVRFESIRLPGCPRGVNPVVSYAVALSCQCALCRRSTTDCGG 120 Query: 123 PKDHPLTCDDPRFQDSSSSKAPPPSLPSPSRLPGP 157 PKDHPLTCDDPRFQDSSSSKAPPPSLPSPSRLPGP Sbjct: 121 PKDHPLTCDDPRFQDSSSSKAPPPSLPSPSRLPGP 155 >gi|4504989 luteinizing hormone beta subunit precursor [Homo sapiens] Length = 141 Score = 248 bits (634), Expect = 1e-66 Identities = 115/134 (85%), Positives = 121/134 (90%) Query: 1 MEMFQGLLLLLLLSMGGTWASKEPLRPRCRPINATLAVEKEGCPVCITVNTTICAGYCPT 60 MEM QGLLLLLLLSMGG WAS+EPLRP C PINA LAVEKEGCPVCITVNTTICAGYCPT Sbjct: 1 MEMLQGLLLLLLLSMGGAWASREPLRPWCHPINAILAVEKEGCPVCITVNTTICAGYCPT 60 Query: 61 MTRVLQGVLPALPQVVCNYRDVRFESIRLPGCPRGVNPVVSYAVALSCQCALCRRSTTDC 120 M RVLQ VLP LPQVVC YRDVRFESIRLPGCPRGV+PVVS+ VALSC+C CRRST+DC Sbjct: 61 MMRVLQAVLPPLPQVVCTYRDVRFESIRLPGCPRGVDPVVSFPVALSCRCGPCRRSTSDC 120 Query: 121 GGPKDHPLTCDDPR 134 GGPKDHPLTCD P+ Sbjct: 121 GGPKDHPLTCDHPQ 134 >gi|115430099 thyroid stimulating hormone, beta precursor [Homo sapiens] Length = 138 Score = 95.9 bits (237), Expect = 1e-20 Identities = 46/96 (47%), Positives = 58/96 (60%), Gaps = 6/96 (6%) Query: 29 CRPINATLAVEKEGCPVCITVNTTICAGYCPTMTRVLQGVL----PALPQVVCNYRDVRF 84 C P T+ +E+ C C+T+NTTICAGYC MTR + G L AL Q VC YRD + Sbjct: 22 CIPTEYTMHIERRECAYCLTINTTICAGYC--MTRDINGKLFLPKYALSQDVCTYRDFIY 79 Query: 85 ESIRLPGCPRGVNPVVSYAVALSCQCALCRRSTTDC 120 ++ +PGCP V P SY VALSC+C C +DC Sbjct: 80 RTVEIPGCPLHVAPYFSYPVALSCKCGKCNTDYSDC 115 >gi|66528995 follicle stimulating hormone, beta polypeptide precursor [Homo sapiens] Length = 129 Score = 85.9 bits (211), Expect = 1e-17 Identities = 38/94 (40%), Positives = 57/94 (60%), Gaps = 4/94 (4%) Query: 29 CRPINATLAVEKEGCPVCITVNTTICAGYCPTMTRVLQGVLPALPQV--VCNYRDVRFES 86 C N T+A+EKE C CI++NTT CAGYC T V + PA P++ C ++++ +E+ Sbjct: 21 CELTNITIAIEKEECRFCISINTTWCAGYCYTRDLVYKD--PARPKIQKTCTFKELVYET 78 Query: 87 IRLPGCPRGVNPVVSYAVALSCQCALCRRSTTDC 120 +R+PGC + + +Y VA C C C +TDC Sbjct: 79 VRVPGCAHHADSLYTYPVATQCHCGKCDSDSTDC 112 >gi|4503791 follicle stimulating hormone, beta polypeptide precursor [Homo sapiens] Length = 129 Score = 85.9 bits (211), Expect = 1e-17 Identities = 38/94 (40%), Positives = 57/94 (60%), Gaps = 4/94 (4%) Query: 29 CRPINATLAVEKEGCPVCITVNTTICAGYCPTMTRVLQGVLPALPQV--VCNYRDVRFES 86 C N T+A+EKE C CI++NTT CAGYC T V + PA P++ C ++++ +E+ Sbjct: 21 CELTNITIAIEKEECRFCISINTTWCAGYCYTRDLVYKD--PARPKIQKTCTFKELVYET 78 Query: 87 IRLPGCPRGVNPVVSYAVALSCQCALCRRSTTDC 120 +R+PGC + + +Y VA C C C +TDC Sbjct: 79 VRVPGCAHHADSLYTYPVATQCHCGKCDSDSTDC 112 >gi|56118234 proline rich 6 [Homo sapiens] Length = 272 Score = 34.3 bits (77), Expect = 0.050 Identities = 24/76 (31%), Positives = 29/76 (38%), Gaps = 9/76 (11%) Query: 98 PVVSYAVALSCQCALCRRSTTDCGG--------PKDHP-LTCDDPRFQDSSSSKAPPPSL 148 P S A AL+ RRS + G P + P L PR Q+ + PPP L Sbjct: 24 PAASAAAALAPSATRTRRSASQAGSKSQAVEKPPSEKPRLRRSSPRAQEEGPGEPPPPEL 83 Query: 149 PSPSRLPGPSDTPILP 164 P P TP P Sbjct: 84 ALLPPPPPPPPTPATP 99 >gi|163914392 glioma tumor suppressor candidate region gene 1 [Homo sapiens] Length = 1560 Score = 34.3 bits (77), Expect = 0.050 Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 2/34 (5%) Query: 133 PRFQDSSSSKAPPPSLP--SPSRLPGPSDTPILP 164 P+ DS +S AP P +P +P + PGPS +P LP Sbjct: 747 PQAPDSQASPAPAPQIPAAAPLKGPGPSSSPSLP 780 >gi|134031945 SCO-spondin [Homo sapiens] Length = 5147 Score = 34.3 bits (77), Expect = 0.050 Identities = 25/76 (32%), Positives = 35/76 (46%), Gaps = 17/76 (22%) Query: 49 VNTTICAGYCPTMTRVLQGVLPALPQV-----VCNYR-----DVRFESIRLPGCPRGVNP 98 V + C+GYCP+ T V+P P + C+YR VR ++R C G Sbjct: 5072 VEVSYCSGYCPSSTH----VMPEEPYLQSQCDCCSYRLDPESPVRILNLR---CLGGHTE 5124 Query: 99 VVSYAVALSCQCALCR 114 V V SCQC+ C+ Sbjct: 5125 PVVLPVIHSCQCSSCQ 5140 Score = 28.9 bits (63), Expect = 2.1 Identities = 20/55 (36%), Positives = 23/55 (41%), Gaps = 8/55 (14%) Query: 106 LSCQCALCRRSTTDCGGPKDHPLTCDDPRFQDSSSSKAPPPSLPSP--SRLPGPS 158 +SC C + C G D P D P PSLP+P S LPGPS Sbjct: 1497 VSCVDGTCLGAIQLCDG------VWDCPDGADEGPGHCPLPSLPTPPASTLPGPS 1545 Score = 26.9 bits (58), Expect = 8.0 Identities = 26/83 (31%), Positives = 33/83 (39%), Gaps = 6/83 (7%) Query: 69 LPALPQVVCNYRDVRFESIRLPGCPR--GVNPVVSYA-VALSCQCALCRRSTTDCGGPKD 125 LPA P +C+ + E L GC R G P ++ + SC L R T C P Sbjct: 3226 LPATPTPLCSGPEAEEEPCLLQGCDRAGGWGPWGPWSHCSRSCGGGL-RSRTRACDQPPP 3284 Query: 126 HPL--TCDDPRFQDSSSSKAPPP 146 L C+ PR Q P P Sbjct: 3285 QGLGDYCEGPRAQGEVCQALPCP 3307 >gi|38026934 Rho guanine nucleotide exchange factor (GEF) 11 isoform 2 [Homo sapiens] Length = 1562 Score = 31.6 bits (70), Expect = 0.33 Identities = 15/42 (35%), Positives = 18/42 (42%) Query: 116 STTDCGGPKDHPLTCDDPRFQDSSSSKAPPPSLPSPSRLPGP 157 S+ G + P PR S PPP LP P R+ GP Sbjct: 125 SSMGISGLQQDPSPAGAPRITSVIPSPPPPPPLPPPQRITGP 166 >gi|7662086 Rho guanine nucleotide exchange factor (GEF) 11 isoform 1 [Homo sapiens] Length = 1522 Score = 31.6 bits (70), Expect = 0.33 Identities = 15/42 (35%), Positives = 18/42 (42%) Query: 116 STTDCGGPKDHPLTCDDPRFQDSSSSKAPPPSLPSPSRLPGP 157 S+ G + P PR S PPP LP P R+ GP Sbjct: 125 SSMGISGLQQDPSPAGAPRITSVIPSPPPPPPLPPPQRITGP 166 >gi|21735550 mitogen-activated protein kinase kinase kinase 10 [Homo sapiens] Length = 954 Score = 31.6 bits (70), Expect = 0.33 Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 4/75 (5%) Query: 90 PGCPRGVNPVVSYAVALSCQCALCRRST-TDCGGPKDHPLTCDDPRFQDSSSSKAPPPSL 148 P P G V + L+ L S+ +DC + + D + + ++ +PPPS Sbjct: 724 PARPHGRREDVGPGLGLAPSATLVSLSSVSDCNSTRSLLRSDSD---EAAPAAPSPPPSP 780 Query: 149 PSPSRLPGPSDTPIL 163 P+P+ P PS P++ Sbjct: 781 PAPTPTPSPSTNPLV 795 >gi|10863911 serine protease inhibitor, Kazal type 2 (acrosin-trypsin inhibitor) [Homo sapiens] Length = 84 Score = 31.6 bits (70), Expect = 0.33 Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 1/38 (2%) Query: 79 YRDVRFESIRLPGCPRGVNPVV-SYAVALSCQCALCRR 115 YR RLPGCPR NPV S + +C LC + Sbjct: 31 YRTPNCSQYRLPGCPRHFNPVCGSDMSTYANECTLCMK 68 >gi|146134388 YLP motif containing 1 [Homo sapiens] Length = 2146 Score = 30.8 bits (68), Expect = 0.56 Identities = 17/42 (40%), Positives = 19/42 (45%), Gaps = 1/42 (2%) Query: 123 PKDHPLTCDDPRFQDSSSSKAPPPSLPSPSRLPGPSDTPILP 164 P P + P S SS PPP LP PS L P+LP Sbjct: 566 PPSLPTSVPPPGMPPSLSSAGPPPVLPPPS-LSSAGPPPVLP 606 >gi|113951734 steroid receptor RNA activator 1 [Homo sapiens] Length = 236 Score = 30.4 bits (67), Expect = 0.73 Identities = 22/71 (30%), Positives = 27/71 (38%), Gaps = 7/71 (9%) Query: 94 RGVNPVVSYAVALSCQCALCRRS--TTDCGGPKDHPLTCDDPRFQDSSSSKAPPPSLPSP 151 RG N ++ L Q RRS T P+D PR S +S PPP P P Sbjct: 25 RGWNDPPQFSYGLQTQAGGPRRSLLTKRVAAPQD-----GSPRVPASETSPGPPPMGPPP 79 Query: 152 SRLPGPSDTPI 162 P P+ Sbjct: 80 PSSKAPRSPPV 90 >gi|14149904 anthrax toxin receptor 1 isoform 1 precursor [Homo sapiens] Length = 564 Score = 30.4 bits (67), Expect = 0.73 Identities = 14/38 (36%), Positives = 17/38 (44%) Query: 127 PLTCDDPRFQDSSSSKAPPPSLPSPSRLPGPSDTPILP 164 P + P S+ PPP P P+R P PS P P Sbjct: 525 PPSAPTPPIPSPPSTLPPPPQAPPPNRAPPPSRPPPRP 562 >gi|23397498 transmembrane protein 92 [Homo sapiens] Length = 159 Score = 30.4 bits (67), Expect = 0.73 Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 6/60 (10%) Query: 108 CQCALCRR----STTDCGGPKDHPLTCDDPRFQDSSSSKAPPPS--LPSPSRLPGPSDTP 161 C C CR + DC GP + P R + S S+ PP S + PS P P++ P Sbjct: 78 CFCRNCREPEPDTPVDCRGPLELPSIIPPERVRVSLSAPPPPYSEVILKPSLGPTPTEPP 137 >gi|71274144 AT hook, DNA binding motif, containing 1 [Homo sapiens] Length = 1603 Score = 30.4 bits (67), Expect = 0.73 Identities = 18/56 (32%), Positives = 24/56 (42%), Gaps = 5/56 (8%) Query: 112 LCRRSTTDCG-----GPKDHPLTCDDPRFQDSSSSKAPPPSLPSPSRLPGPSDTPI 162 LCRR G GP+ L P ++ ++ PPP P P LPGP + Sbjct: 393 LCRRRKAGRGRKADAGPEGRLLPLPMPTGLVAALAEPPPPPPPPPPALPGPGPVSV 448 >gi|161019170 mucin 5AC [Homo sapiens] Length = 6207 Score = 29.6 bits (65), Expect = 1.2 Identities = 25/82 (30%), Positives = 35/82 (42%), Gaps = 5/82 (6%) Query: 32 INATLAVEKEGCPVCITVNTTICAGYCPTMTRVLQGVLPALPQ-VVCNYRDVRFESIRLP 90 IN T+ + +GC VN T C G CP ++ Q C R V E++ L Sbjct: 5999 INTTI-LWHQGCET--EVNITFCEGSCPGASKYSAEAQAMQHQCTCCQERRVHEETVPL- 6054 Query: 91 GCPRGVNPVVSYAVALSCQCAL 112 CP G + +Y A+ C L Sbjct: 6055 HCPNGSAILHTYTHAVQVLCGL 6076 >gi|55742695 sterile alpha motif domain containing 4B [Homo sapiens] Length = 694 Score = 29.6 bits (65), Expect = 1.2 Identities = 18/79 (22%), Positives = 30/79 (37%), Gaps = 12/79 (15%) Query: 96 VNPVVSYAVALSCQCALCRRSTTDCGGPKDHPLTCDDPRFQDSSSSKA------------ 143 + P+ +Y+V + A T G P + PL +P + K Sbjct: 388 ITPIKAYSVLQATVAAATTTPTAKDGAPGEPPLPGAEPPLAHPGTDKGTEAKDPPAVENY 447 Query: 144 PPPSLPSPSRLPGPSDTPI 162 PPP P+P+ P+ P+ Sbjct: 448 PPPPAPAPTDGSEPAPAPV 466 >gi|116284392 mucin 2 precursor [Homo sapiens] Length = 5179 Score = 29.6 bits (65), Expect = 1.2 Identities = 25/106 (23%), Positives = 35/106 (33%), Gaps = 7/106 (6%) Query: 18 TWASKEPLRPRCRPINATLAVEKEGCPVCITVNTTICAGYCPTMTRVLQGVLPALPQVVC 77 T + R C + T V GC + +N C+G C T C Sbjct: 5064 TCTPRNETRVPCSTVPVTTEVSYAGCTKTVLMNH--CSGSCGTFVMYSAKAQALDHSCSC 5121 Query: 78 NYRDVRFESIRLPGCPRGVNPVVSYAVALSCQCALCRRSTTDCGGP 123 + + + CP G + +Y SCQC T CG P Sbjct: 5122 CKEEKTSQREVVLSCPNGGSLTHTYTHIESCQC-----QDTVCGLP 5162 >gi|239749951 PREDICTED: similar to mucin 2 [Homo sapiens] Length = 2639 Score = 29.6 bits (65), Expect = 1.2 Identities = 25/106 (23%), Positives = 35/106 (33%), Gaps = 7/106 (6%) Query: 18 TWASKEPLRPRCRPINATLAVEKEGCPVCITVNTTICAGYCPTMTRVLQGVLPALPQVVC 77 T + R C + T V GC + +N C+G C T C Sbjct: 2524 TCTPRNETRVPCSTVPVTTEVSYAGCTKTVLMNH--CSGSCGTFVMYSAKAQALDHSCSC 2581 Query: 78 NYRDVRFESIRLPGCPRGVNPVVSYAVALSCQCALCRRSTTDCGGP 123 + + + CP G + +Y SCQC T CG P Sbjct: 2582 CKEEKTSQREVVLSCPNGGSLTHTYTHIESCQC-----QDTVCGLP 2622 >gi|4758226 E2F transcription factor 2 [Homo sapiens] Length = 437 Score = 29.6 bits (65), Expect = 1.2 Identities = 17/55 (30%), Positives = 22/55 (40%), Gaps = 5/55 (9%) Query: 112 LCRRSTTDCGGPKDHPLT-----CDDPRFQDSSSSKAPPPSLPSPSRLPGPSDTP 161 LC + P + PL C P SSS P P+ S +P P+ TP Sbjct: 302 LCPEEVQEPDSPSEEPLPSTSTLCPSPDSAQPSSSTDPSIMEPTASSVPAPAPTP 356 >gi|19924099 synapsin I isoform Ia [Homo sapiens] Length = 705 Score = 29.6 bits (65), Expect = 1.2 Identities = 13/32 (40%), Positives = 15/32 (46%) Query: 133 PRFQDSSSSKAPPPSLPSPSRLPGPSDTPILP 164 P+ Q S PP P P RLP P+ P P Sbjct: 487 PQGQQHLSGLGPPAGSPLPQRLPSPTSAPQQP 518 >gi|19924097 synapsin I isoform Ib [Homo sapiens] Length = 669 Score = 29.6 bits (65), Expect = 1.2 Identities = 13/32 (40%), Positives = 15/32 (46%) Query: 133 PRFQDSSSSKAPPPSLPSPSRLPGPSDTPILP 164 P+ Q S PP P P RLP P+ P P Sbjct: 487 PQGQQHLSGLGPPAGSPLPQRLPSPTSAPQQP 518 >gi|169163027 PREDICTED: similar to Putative acrosin-like protease [Homo sapiens] Length = 355 Score = 29.3 bits (64), Expect = 1.6 Identities = 15/39 (38%), Positives = 15/39 (38%) Query: 123 PKDHPLTCDDPRFQDSSSSKAPPPSLPSPSRLPGPSDTP 161 P PL P Q PPP P PS LP P P Sbjct: 264 PPPRPLPPRPPAAQPRPPPSPPPPPPPPPSPLPPPPPPP 302 Database: hs.faa Posted date: Aug 4, 2009 4:42 PM Number of letters in database: 18,247,518 Number of sequences in database: 37,866 Lambda K H 0.322 0.138 0.454 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 8,488,017 Number of Sequences: 37866 Number of extensions: 470183 Number of successful extensions: 4086 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 64 Number of HSP's successfully gapped in prelim test: 67 Number of HSP's that attempted gapping in prelim test: 3840 Number of HSP's gapped (non-prelim): 304 length of query: 165 length of database: 18,247,518 effective HSP length: 94 effective length of query: 71 effective length of database: 14,688,114 effective search space: 1042856094 effective search space used: 1042856094 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.