Guide to the Human Genome
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Search of human proteins with 15426252

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15426252 chorionic gonadotropin, beta polypeptide 8
precursor [Homo sapiens]
         (165 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|4502789 chorionic gonadotropin beta 3 subunit precursor [Homo...   350   3e-97
gi|15451748 chorionic gonadotropin, beta polypeptide 5 precursor...   350   3e-97
gi|15426252 chorionic gonadotropin, beta polypeptide 8 precursor...   350   3e-97
gi|15451750 chorionic gonadotropin, beta polypeptide 7 precursor...   342   7e-95
gi|132566538 chorionic gonadotropin, beta polypeptide 2 [Homo sa...   338   1e-93
gi|132566537 chorionic gonadotropin, beta polypeptide 1 [Homo sa...   322   7e-89
gi|4504989 luteinizing hormone beta subunit precursor [Homo sapi...   248   1e-66
gi|115430099 thyroid stimulating hormone, beta precursor [Homo s...    96   1e-20
gi|66528995 follicle stimulating hormone, beta polypeptide precu...    86   1e-17
gi|4503791 follicle stimulating hormone, beta polypeptide precur...    86   1e-17
gi|56118234 proline rich 6 [Homo sapiens]                              34   0.050
gi|163914392 glioma tumor suppressor candidate region gene 1 [Ho...    34   0.050
gi|134031945 SCO-spondin [Homo sapiens]                                34   0.050
gi|38026934 Rho guanine nucleotide exchange factor (GEF) 11 isof...    32   0.33 
gi|7662086 Rho guanine nucleotide exchange factor (GEF) 11 isofo...    32   0.33 
gi|21735550 mitogen-activated protein kinase kinase kinase 10 [H...    32   0.33 
gi|10863911 serine protease inhibitor, Kazal type 2 (acrosin-try...    32   0.33 
gi|146134388 YLP motif containing 1 [Homo sapiens]                     31   0.56 
gi|113951734 steroid receptor RNA activator 1 [Homo sapiens]           30   0.73 
gi|14149904 anthrax toxin receptor 1 isoform 1 precursor [Homo s...    30   0.73 
gi|23397498 transmembrane protein 92 [Homo sapiens]                    30   0.73 
gi|71274144 AT hook, DNA binding motif, containing 1 [Homo sapiens]    30   0.73 
gi|161019170 mucin 5AC [Homo sapiens]                                  30   1.2  
gi|55742695 sterile alpha motif domain containing 4B [Homo sapiens]    30   1.2  
gi|116284392 mucin 2 precursor [Homo sapiens]                          30   1.2  
gi|239749951 PREDICTED: similar to mucin 2 [Homo sapiens]              30   1.2  
gi|4758226 E2F transcription factor 2 [Homo sapiens]                   30   1.2  
gi|19924099 synapsin I isoform Ia [Homo sapiens]                       30   1.2  
gi|19924097 synapsin I isoform Ib [Homo sapiens]                       30   1.2  
gi|169163027 PREDICTED: similar to Putative acrosin-like proteas...    29   1.6  

>gi|4502789 chorionic gonadotropin beta 3 subunit precursor [Homo
           sapiens]
          Length = 165

 Score =  350 bits (898), Expect = 3e-97
 Identities = 165/165 (100%), Positives = 165/165 (100%)

Query: 1   MEMFQGLLLLLLLSMGGTWASKEPLRPRCRPINATLAVEKEGCPVCITVNTTICAGYCPT 60
           MEMFQGLLLLLLLSMGGTWASKEPLRPRCRPINATLAVEKEGCPVCITVNTTICAGYCPT
Sbjct: 1   MEMFQGLLLLLLLSMGGTWASKEPLRPRCRPINATLAVEKEGCPVCITVNTTICAGYCPT 60

Query: 61  MTRVLQGVLPALPQVVCNYRDVRFESIRLPGCPRGVNPVVSYAVALSCQCALCRRSTTDC 120
           MTRVLQGVLPALPQVVCNYRDVRFESIRLPGCPRGVNPVVSYAVALSCQCALCRRSTTDC
Sbjct: 61  MTRVLQGVLPALPQVVCNYRDVRFESIRLPGCPRGVNPVVSYAVALSCQCALCRRSTTDC 120

Query: 121 GGPKDHPLTCDDPRFQDSSSSKAPPPSLPSPSRLPGPSDTPILPQ 165
           GGPKDHPLTCDDPRFQDSSSSKAPPPSLPSPSRLPGPSDTPILPQ
Sbjct: 121 GGPKDHPLTCDDPRFQDSSSSKAPPPSLPSPSRLPGPSDTPILPQ 165


>gi|15451748 chorionic gonadotropin, beta polypeptide 5 precursor
           [Homo sapiens]
          Length = 165

 Score =  350 bits (898), Expect = 3e-97
 Identities = 165/165 (100%), Positives = 165/165 (100%)

Query: 1   MEMFQGLLLLLLLSMGGTWASKEPLRPRCRPINATLAVEKEGCPVCITVNTTICAGYCPT 60
           MEMFQGLLLLLLLSMGGTWASKEPLRPRCRPINATLAVEKEGCPVCITVNTTICAGYCPT
Sbjct: 1   MEMFQGLLLLLLLSMGGTWASKEPLRPRCRPINATLAVEKEGCPVCITVNTTICAGYCPT 60

Query: 61  MTRVLQGVLPALPQVVCNYRDVRFESIRLPGCPRGVNPVVSYAVALSCQCALCRRSTTDC 120
           MTRVLQGVLPALPQVVCNYRDVRFESIRLPGCPRGVNPVVSYAVALSCQCALCRRSTTDC
Sbjct: 61  MTRVLQGVLPALPQVVCNYRDVRFESIRLPGCPRGVNPVVSYAVALSCQCALCRRSTTDC 120

Query: 121 GGPKDHPLTCDDPRFQDSSSSKAPPPSLPSPSRLPGPSDTPILPQ 165
           GGPKDHPLTCDDPRFQDSSSSKAPPPSLPSPSRLPGPSDTPILPQ
Sbjct: 121 GGPKDHPLTCDDPRFQDSSSSKAPPPSLPSPSRLPGPSDTPILPQ 165


>gi|15426252 chorionic gonadotropin, beta polypeptide 8 precursor
           [Homo sapiens]
          Length = 165

 Score =  350 bits (898), Expect = 3e-97
 Identities = 165/165 (100%), Positives = 165/165 (100%)

Query: 1   MEMFQGLLLLLLLSMGGTWASKEPLRPRCRPINATLAVEKEGCPVCITVNTTICAGYCPT 60
           MEMFQGLLLLLLLSMGGTWASKEPLRPRCRPINATLAVEKEGCPVCITVNTTICAGYCPT
Sbjct: 1   MEMFQGLLLLLLLSMGGTWASKEPLRPRCRPINATLAVEKEGCPVCITVNTTICAGYCPT 60

Query: 61  MTRVLQGVLPALPQVVCNYRDVRFESIRLPGCPRGVNPVVSYAVALSCQCALCRRSTTDC 120
           MTRVLQGVLPALPQVVCNYRDVRFESIRLPGCPRGVNPVVSYAVALSCQCALCRRSTTDC
Sbjct: 61  MTRVLQGVLPALPQVVCNYRDVRFESIRLPGCPRGVNPVVSYAVALSCQCALCRRSTTDC 120

Query: 121 GGPKDHPLTCDDPRFQDSSSSKAPPPSLPSPSRLPGPSDTPILPQ 165
           GGPKDHPLTCDDPRFQDSSSSKAPPPSLPSPSRLPGPSDTPILPQ
Sbjct: 121 GGPKDHPLTCDDPRFQDSSSSKAPPPSLPSPSRLPGPSDTPILPQ 165


>gi|15451750 chorionic gonadotropin, beta polypeptide 7 precursor
           [Homo sapiens]
          Length = 165

 Score =  342 bits (878), Expect = 7e-95
 Identities = 162/165 (98%), Positives = 163/165 (98%)

Query: 1   MEMFQGLLLLLLLSMGGTWASKEPLRPRCRPINATLAVEKEGCPVCITVNTTICAGYCPT 60
           MEMFQGLLLLLLLSMGGTWAS+E LRPRCRPINATLAVEKEGCPVCITVNTTICAGYCPT
Sbjct: 1   MEMFQGLLLLLLLSMGGTWASREMLRPRCRPINATLAVEKEGCPVCITVNTTICAGYCPT 60

Query: 61  MTRVLQGVLPALPQVVCNYRDVRFESIRLPGCPRGVNPVVSYAVALSCQCALCRRSTTDC 120
           MTRVLQGVLPALPQVVCNYRDVRFESIRLPGCPRGVNPVVSYAVALSCQCALCRRSTTDC
Sbjct: 61  MTRVLQGVLPALPQVVCNYRDVRFESIRLPGCPRGVNPVVSYAVALSCQCALCRRSTTDC 120

Query: 121 GGPKDHPLTCDDPRFQDSSSSKAPPPSLPSPSRLPGPSDTPILPQ 165
           GGPKDHPLTCDDPRFQ SSSSKAPPPSLPSPSRLPGPSDTPILPQ
Sbjct: 121 GGPKDHPLTCDDPRFQASSSSKAPPPSLPSPSRLPGPSDTPILPQ 165


>gi|132566538 chorionic gonadotropin, beta polypeptide 2 [Homo
           sapiens]
          Length = 163

 Score =  338 bits (868), Expect = 1e-93
 Identities = 160/163 (98%), Positives = 161/163 (98%)

Query: 3   MFQGLLLLLLLSMGGTWASKEPLRPRCRPINATLAVEKEGCPVCITVNTTICAGYCPTMT 62
           M +GLLLLLLLSMGGTWASKEPLRPRCRPINATLAVEKEGCPVCITVNTTICAGYCPTMT
Sbjct: 1   MSKGLLLLLLLSMGGTWASKEPLRPRCRPINATLAVEKEGCPVCITVNTTICAGYCPTMT 60

Query: 63  RVLQGVLPALPQVVCNYRDVRFESIRLPGCPRGVNPVVSYAVALSCQCALCRRSTTDCGG 122
           RVLQGVLPALPQVVCNYRDVRFESIRLPGCPRGVNPVVSYAVALSCQCALCRRSTTDCGG
Sbjct: 61  RVLQGVLPALPQVVCNYRDVRFESIRLPGCPRGVNPVVSYAVALSCQCALCRRSTTDCGG 120

Query: 123 PKDHPLTCDDPRFQDSSSSKAPPPSLPSPSRLPGPSDTPILPQ 165
           PKDHPLTCDDPRFQ SSSSKAPPPSLPSPSRLPGPSDTPILPQ
Sbjct: 121 PKDHPLTCDDPRFQASSSSKAPPPSLPSPSRLPGPSDTPILPQ 163


>gi|132566537 chorionic gonadotropin, beta polypeptide 1 [Homo
           sapiens]
          Length = 155

 Score =  322 bits (826), Expect = 7e-89
 Identities = 152/155 (98%), Positives = 153/155 (98%)

Query: 3   MFQGLLLLLLLSMGGTWASKEPLRPRCRPINATLAVEKEGCPVCITVNTTICAGYCPTMT 62
           M + LLLLLLLSMGGTWASKEPLRPRCRPINATLAVEKEGCPVCITVNTTICAGYCPTMT
Sbjct: 1   MSKRLLLLLLLSMGGTWASKEPLRPRCRPINATLAVEKEGCPVCITVNTTICAGYCPTMT 60

Query: 63  RVLQGVLPALPQVVCNYRDVRFESIRLPGCPRGVNPVVSYAVALSCQCALCRRSTTDCGG 122
           RVLQGVLPALPQVVCNYRDVRFESIRLPGCPRGVNPVVSYAVALSCQCALCRRSTTDCGG
Sbjct: 61  RVLQGVLPALPQVVCNYRDVRFESIRLPGCPRGVNPVVSYAVALSCQCALCRRSTTDCGG 120

Query: 123 PKDHPLTCDDPRFQDSSSSKAPPPSLPSPSRLPGP 157
           PKDHPLTCDDPRFQDSSSSKAPPPSLPSPSRLPGP
Sbjct: 121 PKDHPLTCDDPRFQDSSSSKAPPPSLPSPSRLPGP 155


>gi|4504989 luteinizing hormone beta subunit precursor [Homo
           sapiens]
          Length = 141

 Score =  248 bits (634), Expect = 1e-66
 Identities = 115/134 (85%), Positives = 121/134 (90%)

Query: 1   MEMFQGLLLLLLLSMGGTWASKEPLRPRCRPINATLAVEKEGCPVCITVNTTICAGYCPT 60
           MEM QGLLLLLLLSMGG WAS+EPLRP C PINA LAVEKEGCPVCITVNTTICAGYCPT
Sbjct: 1   MEMLQGLLLLLLLSMGGAWASREPLRPWCHPINAILAVEKEGCPVCITVNTTICAGYCPT 60

Query: 61  MTRVLQGVLPALPQVVCNYRDVRFESIRLPGCPRGVNPVVSYAVALSCQCALCRRSTTDC 120
           M RVLQ VLP LPQVVC YRDVRFESIRLPGCPRGV+PVVS+ VALSC+C  CRRST+DC
Sbjct: 61  MMRVLQAVLPPLPQVVCTYRDVRFESIRLPGCPRGVDPVVSFPVALSCRCGPCRRSTSDC 120

Query: 121 GGPKDHPLTCDDPR 134
           GGPKDHPLTCD P+
Sbjct: 121 GGPKDHPLTCDHPQ 134


>gi|115430099 thyroid stimulating hormone, beta precursor [Homo
           sapiens]
          Length = 138

 Score = 95.9 bits (237), Expect = 1e-20
 Identities = 46/96 (47%), Positives = 58/96 (60%), Gaps = 6/96 (6%)

Query: 29  CRPINATLAVEKEGCPVCITVNTTICAGYCPTMTRVLQGVL----PALPQVVCNYRDVRF 84
           C P   T+ +E+  C  C+T+NTTICAGYC  MTR + G L     AL Q VC YRD  +
Sbjct: 22  CIPTEYTMHIERRECAYCLTINTTICAGYC--MTRDINGKLFLPKYALSQDVCTYRDFIY 79

Query: 85  ESIRLPGCPRGVNPVVSYAVALSCQCALCRRSTTDC 120
            ++ +PGCP  V P  SY VALSC+C  C    +DC
Sbjct: 80  RTVEIPGCPLHVAPYFSYPVALSCKCGKCNTDYSDC 115


>gi|66528995 follicle stimulating hormone, beta polypeptide
           precursor [Homo sapiens]
          Length = 129

 Score = 85.9 bits (211), Expect = 1e-17
 Identities = 38/94 (40%), Positives = 57/94 (60%), Gaps = 4/94 (4%)

Query: 29  CRPINATLAVEKEGCPVCITVNTTICAGYCPTMTRVLQGVLPALPQV--VCNYRDVRFES 86
           C   N T+A+EKE C  CI++NTT CAGYC T   V +   PA P++   C ++++ +E+
Sbjct: 21  CELTNITIAIEKEECRFCISINTTWCAGYCYTRDLVYKD--PARPKIQKTCTFKELVYET 78

Query: 87  IRLPGCPRGVNPVVSYAVALSCQCALCRRSTTDC 120
           +R+PGC    + + +Y VA  C C  C   +TDC
Sbjct: 79  VRVPGCAHHADSLYTYPVATQCHCGKCDSDSTDC 112


>gi|4503791 follicle stimulating hormone, beta polypeptide precursor
           [Homo sapiens]
          Length = 129

 Score = 85.9 bits (211), Expect = 1e-17
 Identities = 38/94 (40%), Positives = 57/94 (60%), Gaps = 4/94 (4%)

Query: 29  CRPINATLAVEKEGCPVCITVNTTICAGYCPTMTRVLQGVLPALPQV--VCNYRDVRFES 86
           C   N T+A+EKE C  CI++NTT CAGYC T   V +   PA P++   C ++++ +E+
Sbjct: 21  CELTNITIAIEKEECRFCISINTTWCAGYCYTRDLVYKD--PARPKIQKTCTFKELVYET 78

Query: 87  IRLPGCPRGVNPVVSYAVALSCQCALCRRSTTDC 120
           +R+PGC    + + +Y VA  C C  C   +TDC
Sbjct: 79  VRVPGCAHHADSLYTYPVATQCHCGKCDSDSTDC 112


>gi|56118234 proline rich 6 [Homo sapiens]
          Length = 272

 Score = 34.3 bits (77), Expect = 0.050
 Identities = 24/76 (31%), Positives = 29/76 (38%), Gaps = 9/76 (11%)

Query: 98  PVVSYAVALSCQCALCRRSTTDCGG--------PKDHP-LTCDDPRFQDSSSSKAPPPSL 148
           P  S A AL+      RRS +  G         P + P L    PR Q+    + PPP L
Sbjct: 24  PAASAAAALAPSATRTRRSASQAGSKSQAVEKPPSEKPRLRRSSPRAQEEGPGEPPPPEL 83

Query: 149 PSPSRLPGPSDTPILP 164
                 P P  TP  P
Sbjct: 84  ALLPPPPPPPPTPATP 99


>gi|163914392 glioma tumor suppressor candidate region gene 1 [Homo
           sapiens]
          Length = 1560

 Score = 34.3 bits (77), Expect = 0.050
 Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 2/34 (5%)

Query: 133 PRFQDSSSSKAPPPSLP--SPSRLPGPSDTPILP 164
           P+  DS +S AP P +P  +P + PGPS +P LP
Sbjct: 747 PQAPDSQASPAPAPQIPAAAPLKGPGPSSSPSLP 780


>gi|134031945 SCO-spondin [Homo sapiens]
          Length = 5147

 Score = 34.3 bits (77), Expect = 0.050
 Identities = 25/76 (32%), Positives = 35/76 (46%), Gaps = 17/76 (22%)

Query: 49   VNTTICAGYCPTMTRVLQGVLPALPQV-----VCNYR-----DVRFESIRLPGCPRGVNP 98
            V  + C+GYCP+ T     V+P  P +      C+YR      VR  ++R   C  G   
Sbjct: 5072 VEVSYCSGYCPSSTH----VMPEEPYLQSQCDCCSYRLDPESPVRILNLR---CLGGHTE 5124

Query: 99   VVSYAVALSCQCALCR 114
             V   V  SCQC+ C+
Sbjct: 5125 PVVLPVIHSCQCSSCQ 5140



 Score = 28.9 bits (63), Expect = 2.1
 Identities = 20/55 (36%), Positives = 23/55 (41%), Gaps = 8/55 (14%)

Query: 106  LSCQCALCRRSTTDCGGPKDHPLTCDDPRFQDSSSSKAPPPSLPSP--SRLPGPS 158
            +SC    C  +   C G        D P   D      P PSLP+P  S LPGPS
Sbjct: 1497 VSCVDGTCLGAIQLCDG------VWDCPDGADEGPGHCPLPSLPTPPASTLPGPS 1545



 Score = 26.9 bits (58), Expect = 8.0
 Identities = 26/83 (31%), Positives = 33/83 (39%), Gaps = 6/83 (7%)

Query: 69   LPALPQVVCNYRDVRFESIRLPGCPR--GVNPVVSYA-VALSCQCALCRRSTTDCGGPKD 125
            LPA P  +C+  +   E   L GC R  G  P   ++  + SC   L R  T  C  P  
Sbjct: 3226 LPATPTPLCSGPEAEEEPCLLQGCDRAGGWGPWGPWSHCSRSCGGGL-RSRTRACDQPPP 3284

Query: 126  HPL--TCDDPRFQDSSSSKAPPP 146
              L   C+ PR Q       P P
Sbjct: 3285 QGLGDYCEGPRAQGEVCQALPCP 3307


>gi|38026934 Rho guanine nucleotide exchange factor (GEF) 11 isoform
           2 [Homo sapiens]
          Length = 1562

 Score = 31.6 bits (70), Expect = 0.33
 Identities = 15/42 (35%), Positives = 18/42 (42%)

Query: 116 STTDCGGPKDHPLTCDDPRFQDSSSSKAPPPSLPSPSRLPGP 157
           S+    G +  P     PR      S  PPP LP P R+ GP
Sbjct: 125 SSMGISGLQQDPSPAGAPRITSVIPSPPPPPPLPPPQRITGP 166


>gi|7662086 Rho guanine nucleotide exchange factor (GEF) 11 isoform
           1 [Homo sapiens]
          Length = 1522

 Score = 31.6 bits (70), Expect = 0.33
 Identities = 15/42 (35%), Positives = 18/42 (42%)

Query: 116 STTDCGGPKDHPLTCDDPRFQDSSSSKAPPPSLPSPSRLPGP 157
           S+    G +  P     PR      S  PPP LP P R+ GP
Sbjct: 125 SSMGISGLQQDPSPAGAPRITSVIPSPPPPPPLPPPQRITGP 166


>gi|21735550 mitogen-activated protein kinase kinase kinase 10 [Homo
           sapiens]
          Length = 954

 Score = 31.6 bits (70), Expect = 0.33
 Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 4/75 (5%)

Query: 90  PGCPRGVNPVVSYAVALSCQCALCRRST-TDCGGPKDHPLTCDDPRFQDSSSSKAPPPSL 148
           P  P G    V   + L+    L   S+ +DC   +    +  D   + + ++ +PPPS 
Sbjct: 724 PARPHGRREDVGPGLGLAPSATLVSLSSVSDCNSTRSLLRSDSD---EAAPAAPSPPPSP 780

Query: 149 PSPSRLPGPSDTPIL 163
           P+P+  P PS  P++
Sbjct: 781 PAPTPTPSPSTNPLV 795


>gi|10863911 serine protease inhibitor, Kazal type 2
           (acrosin-trypsin inhibitor) [Homo sapiens]
          Length = 84

 Score = 31.6 bits (70), Expect = 0.33
 Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 1/38 (2%)

Query: 79  YRDVRFESIRLPGCPRGVNPVV-SYAVALSCQCALCRR 115
           YR       RLPGCPR  NPV  S     + +C LC +
Sbjct: 31  YRTPNCSQYRLPGCPRHFNPVCGSDMSTYANECTLCMK 68


>gi|146134388 YLP motif containing 1 [Homo sapiens]
          Length = 2146

 Score = 30.8 bits (68), Expect = 0.56
 Identities = 17/42 (40%), Positives = 19/42 (45%), Gaps = 1/42 (2%)

Query: 123 PKDHPLTCDDPRFQDSSSSKAPPPSLPSPSRLPGPSDTPILP 164
           P   P +   P    S SS  PPP LP PS L      P+LP
Sbjct: 566 PPSLPTSVPPPGMPPSLSSAGPPPVLPPPS-LSSAGPPPVLP 606


>gi|113951734 steroid receptor RNA activator 1 [Homo sapiens]
          Length = 236

 Score = 30.4 bits (67), Expect = 0.73
 Identities = 22/71 (30%), Positives = 27/71 (38%), Gaps = 7/71 (9%)

Query: 94  RGVNPVVSYAVALSCQCALCRRS--TTDCGGPKDHPLTCDDPRFQDSSSSKAPPPSLPSP 151
           RG N    ++  L  Q    RRS  T     P+D       PR   S +S  PPP  P P
Sbjct: 25  RGWNDPPQFSYGLQTQAGGPRRSLLTKRVAAPQD-----GSPRVPASETSPGPPPMGPPP 79

Query: 152 SRLPGPSDTPI 162
                P   P+
Sbjct: 80  PSSKAPRSPPV 90


>gi|14149904 anthrax toxin receptor 1 isoform 1 precursor [Homo
           sapiens]
          Length = 564

 Score = 30.4 bits (67), Expect = 0.73
 Identities = 14/38 (36%), Positives = 17/38 (44%)

Query: 127 PLTCDDPRFQDSSSSKAPPPSLPSPSRLPGPSDTPILP 164
           P +   P      S+  PPP  P P+R P PS  P  P
Sbjct: 525 PPSAPTPPIPSPPSTLPPPPQAPPPNRAPPPSRPPPRP 562


>gi|23397498 transmembrane protein 92 [Homo sapiens]
          Length = 159

 Score = 30.4 bits (67), Expect = 0.73
 Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 6/60 (10%)

Query: 108 CQCALCRR----STTDCGGPKDHPLTCDDPRFQDSSSSKAPPPS--LPSPSRLPGPSDTP 161
           C C  CR     +  DC GP + P      R + S S+  PP S  +  PS  P P++ P
Sbjct: 78  CFCRNCREPEPDTPVDCRGPLELPSIIPPERVRVSLSAPPPPYSEVILKPSLGPTPTEPP 137


>gi|71274144 AT hook, DNA binding motif, containing 1 [Homo sapiens]
          Length = 1603

 Score = 30.4 bits (67), Expect = 0.73
 Identities = 18/56 (32%), Positives = 24/56 (42%), Gaps = 5/56 (8%)

Query: 112 LCRRSTTDCG-----GPKDHPLTCDDPRFQDSSSSKAPPPSLPSPSRLPGPSDTPI 162
           LCRR     G     GP+   L    P    ++ ++ PPP  P P  LPGP    +
Sbjct: 393 LCRRRKAGRGRKADAGPEGRLLPLPMPTGLVAALAEPPPPPPPPPPALPGPGPVSV 448


>gi|161019170 mucin 5AC [Homo sapiens]
          Length = 6207

 Score = 29.6 bits (65), Expect = 1.2
 Identities = 25/82 (30%), Positives = 35/82 (42%), Gaps = 5/82 (6%)

Query: 32   INATLAVEKEGCPVCITVNTTICAGYCPTMTRVLQGVLPALPQ-VVCNYRDVRFESIRLP 90
            IN T+ +  +GC     VN T C G CP  ++          Q   C  R V  E++ L 
Sbjct: 5999 INTTI-LWHQGCET--EVNITFCEGSCPGASKYSAEAQAMQHQCTCCQERRVHEETVPL- 6054

Query: 91   GCPRGVNPVVSYAVALSCQCAL 112
             CP G   + +Y  A+   C L
Sbjct: 6055 HCPNGSAILHTYTHAVQVLCGL 6076


>gi|55742695 sterile alpha motif domain containing 4B [Homo sapiens]
          Length = 694

 Score = 29.6 bits (65), Expect = 1.2
 Identities = 18/79 (22%), Positives = 30/79 (37%), Gaps = 12/79 (15%)

Query: 96  VNPVVSYAVALSCQCALCRRSTTDCGGPKDHPLTCDDPRFQDSSSSKA------------ 143
           + P+ +Y+V  +   A     T   G P + PL   +P      + K             
Sbjct: 388 ITPIKAYSVLQATVAAATTTPTAKDGAPGEPPLPGAEPPLAHPGTDKGTEAKDPPAVENY 447

Query: 144 PPPSLPSPSRLPGPSDTPI 162
           PPP  P+P+    P+  P+
Sbjct: 448 PPPPAPAPTDGSEPAPAPV 466


>gi|116284392 mucin 2 precursor [Homo sapiens]
          Length = 5179

 Score = 29.6 bits (65), Expect = 1.2
 Identities = 25/106 (23%), Positives = 35/106 (33%), Gaps = 7/106 (6%)

Query: 18   TWASKEPLRPRCRPINATLAVEKEGCPVCITVNTTICAGYCPTMTRVLQGVLPALPQVVC 77
            T   +   R  C  +  T  V   GC   + +N   C+G C T                C
Sbjct: 5064 TCTPRNETRVPCSTVPVTTEVSYAGCTKTVLMNH--CSGSCGTFVMYSAKAQALDHSCSC 5121

Query: 78   NYRDVRFESIRLPGCPRGVNPVVSYAVALSCQCALCRRSTTDCGGP 123
               +   +   +  CP G +   +Y    SCQC       T CG P
Sbjct: 5122 CKEEKTSQREVVLSCPNGGSLTHTYTHIESCQC-----QDTVCGLP 5162


>gi|239749951 PREDICTED: similar to mucin 2 [Homo sapiens]
          Length = 2639

 Score = 29.6 bits (65), Expect = 1.2
 Identities = 25/106 (23%), Positives = 35/106 (33%), Gaps = 7/106 (6%)

Query: 18   TWASKEPLRPRCRPINATLAVEKEGCPVCITVNTTICAGYCPTMTRVLQGVLPALPQVVC 77
            T   +   R  C  +  T  V   GC   + +N   C+G C T                C
Sbjct: 2524 TCTPRNETRVPCSTVPVTTEVSYAGCTKTVLMNH--CSGSCGTFVMYSAKAQALDHSCSC 2581

Query: 78   NYRDVRFESIRLPGCPRGVNPVVSYAVALSCQCALCRRSTTDCGGP 123
               +   +   +  CP G +   +Y    SCQC       T CG P
Sbjct: 2582 CKEEKTSQREVVLSCPNGGSLTHTYTHIESCQC-----QDTVCGLP 2622


>gi|4758226 E2F transcription factor 2 [Homo sapiens]
          Length = 437

 Score = 29.6 bits (65), Expect = 1.2
 Identities = 17/55 (30%), Positives = 22/55 (40%), Gaps = 5/55 (9%)

Query: 112 LCRRSTTDCGGPKDHPLT-----CDDPRFQDSSSSKAPPPSLPSPSRLPGPSDTP 161
           LC     +   P + PL      C  P     SSS  P    P+ S +P P+ TP
Sbjct: 302 LCPEEVQEPDSPSEEPLPSTSTLCPSPDSAQPSSSTDPSIMEPTASSVPAPAPTP 356


>gi|19924099 synapsin I isoform Ia [Homo sapiens]
          Length = 705

 Score = 29.6 bits (65), Expect = 1.2
 Identities = 13/32 (40%), Positives = 15/32 (46%)

Query: 133 PRFQDSSSSKAPPPSLPSPSRLPGPSDTPILP 164
           P+ Q   S   PP   P P RLP P+  P  P
Sbjct: 487 PQGQQHLSGLGPPAGSPLPQRLPSPTSAPQQP 518


>gi|19924097 synapsin I isoform Ib [Homo sapiens]
          Length = 669

 Score = 29.6 bits (65), Expect = 1.2
 Identities = 13/32 (40%), Positives = 15/32 (46%)

Query: 133 PRFQDSSSSKAPPPSLPSPSRLPGPSDTPILP 164
           P+ Q   S   PP   P P RLP P+  P  P
Sbjct: 487 PQGQQHLSGLGPPAGSPLPQRLPSPTSAPQQP 518


>gi|169163027 PREDICTED: similar to Putative acrosin-like protease
           [Homo sapiens]
          Length = 355

 Score = 29.3 bits (64), Expect = 1.6
 Identities = 15/39 (38%), Positives = 15/39 (38%)

Query: 123 PKDHPLTCDDPRFQDSSSSKAPPPSLPSPSRLPGPSDTP 161
           P   PL    P  Q       PPP  P PS LP P   P
Sbjct: 264 PPPRPLPPRPPAAQPRPPPSPPPPPPPPPSPLPPPPPPP 302


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.322    0.138    0.454 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,488,017
Number of Sequences: 37866
Number of extensions: 470183
Number of successful extensions: 4086
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 67
Number of HSP's that attempted gapping in prelim test: 3840
Number of HSP's gapped (non-prelim): 304
length of query: 165
length of database: 18,247,518
effective HSP length: 94
effective length of query: 71
effective length of database: 14,688,114
effective search space: 1042856094
effective search space used: 1042856094
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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