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Search of human proteins with 154240722
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|154240722 hypothetical protein LOC399949 isoform 1 [Homo
sapiens]
(196 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|154240722 hypothetical protein LOC399949 isoform 1 [Homo sapi... 387 e-108
gi|154240677 hypothetical protein LOC399949 isoform 2 [Homo sapi... 316 9e-87
gi|56788397 myelin oligodendrocyte glycoprotein isoform beta4 pr... 44 1e-04
gi|56788395 myelin oligodendrocyte glycoprotein isoform alpha4 p... 44 1e-04
gi|126362971 serine/threonine kinase 10 [Homo sapiens] 39 0.004
gi|59933284 RUN domain containing 2B [Homo sapiens] 37 0.008
gi|153085395 histone deacetylase 4 [Homo sapiens] 37 0.014
gi|193794843 BEN domain containing 2 [Homo sapiens] 37 0.014
gi|87298937 centrosomal protein 110kDa [Homo sapiens] 37 0.014
gi|239745095 PREDICTED: hypothetical protein LOC645202 [Homo sap... 36 0.018
gi|238908517 colony stimulating factor 2 receptor alpha chain is... 36 0.018
gi|195976782 Paf1/RNA polymerase II complex component [Homo sapi... 36 0.024
gi|157151755 ribonuclease P/MRP 30kDa subunit isoform a [Homo sa... 35 0.031
gi|116256481 TNFAIP3 interacting protein 1 [Homo sapiens] 35 0.053
gi|148746195 trichohyalin [Homo sapiens] 35 0.053
gi|104526627 triadin [Homo sapiens] 34 0.070
gi|229577273 BUD13 homolog isoform 2 [Homo sapiens] 34 0.091
gi|14249338 BUD13 homolog isoform 1 [Homo sapiens] 34 0.091
gi|30089940 Golgi autoantigen, golgin subfamily a, 3 [Homo sapiens] 34 0.091
gi|222418637 golgi autoantigen, golgin subfamily a-like [Homo sa... 33 0.12
gi|7656977 calcitonin gene-related peptide-receptor component pr... 33 0.12
gi|146260271 hypothetical protein LOC129881 [Homo sapiens] 33 0.12
gi|47578099 selenoprotein N, 1 isoform 1 precursor [Homo sapiens] 33 0.16
gi|153945728 microtubule-associated protein 1B [Homo sapiens] 33 0.16
gi|56118310 nuclear casein kinase and cyclin-dependent kinase su... 33 0.20
gi|14150064 polymerase (RNA) III (DNA directed) polypeptide G (3... 33 0.20
gi|190194355 p90 autoantigen [Homo sapiens] 32 0.35
gi|239756241 PREDICTED: golgi autoantigen, golgin subfamily a-li... 32 0.35
gi|4506885 semenogelin II precursor [Homo sapiens] 32 0.35
gi|14670392 bromodomain adjacent to zinc finger domain, 1B [Homo... 32 0.45
>gi|154240722 hypothetical protein LOC399949 isoform 1 [Homo
sapiens]
Length = 196
Score = 387 bits (993), Expect = e-108
Identities = 196/196 (100%), Positives = 196/196 (100%)
Query: 1 METGPSEEPSGRKESQEMCPPGLLVFAGSSEQDANLAKQFWISASMYPPSESQLVLRRDS 60
METGPSEEPSGRKESQEMCPPGLLVFAGSSEQDANLAKQFWISASMYPPSESQLVLRRDS
Sbjct: 1 METGPSEEPSGRKESQEMCPPGLLVFAGSSEQDANLAKQFWISASMYPPSESQLVLRRDS 60
Query: 61 SQRLPVARPRRSRGSENSHSSQSFHLASNKNRDIFAEALKIQESEEKVKYLQKTRSHSVT 120
SQRLPVARPRRSRGSENSHSSQSFHLASNKNRDIFAEALKIQESEEKVKYLQKTRSHSVT
Sbjct: 61 SQRLPVARPRRSRGSENSHSSQSFHLASNKNRDIFAEALKIQESEEKVKYLQKTRSHSVT 120
Query: 121 QNEVQWHDHGSLQPQLSRIQAKTREEILQLLRKQREERISKELISLPYKPKAKEHKAKKV 180
QNEVQWHDHGSLQPQLSRIQAKTREEILQLLRKQREERISKELISLPYKPKAKEHKAKKV
Sbjct: 121 QNEVQWHDHGSLQPQLSRIQAKTREEILQLLRKQREERISKELISLPYKPKAKEHKAKKV 180
Query: 181 VSESDKEDQEEVKTLD 196
VSESDKEDQEEVKTLD
Sbjct: 181 VSESDKEDQEEVKTLD 196
>gi|154240677 hypothetical protein LOC399949 isoform 2 [Homo
sapiens]
Length = 169
Score = 316 bits (809), Expect = 9e-87
Identities = 169/196 (86%), Positives = 169/196 (86%), Gaps = 27/196 (13%)
Query: 1 METGPSEEPSGRKESQEMCPPGLLVFAGSSEQDANLAKQFWISASMYPPSESQLVLRRDS 60
METGPSEEPSGRKESQEMCPPGLLVFAGSSEQDANLAKQFWISASMYPPSESQLVLRRDS
Sbjct: 1 METGPSEEPSGRKESQEMCPPGLLVFAGSSEQDANLAKQFWISASMYPPSESQLVLRRDS 60
Query: 61 SQRLPVARPRRSRGSENSHSSQSFHLASNKNRDIFAEALKIQESEEKVKYLQKTRSHSVT 120
SQRLPVARPRRSRGSENSHSSQSFHLASNKNRDIFAEALKIQESEEKVKYLQK
Sbjct: 61 SQRLPVARPRRSRGSENSHSSQSFHLASNKNRDIFAEALKIQESEEKVKYLQK------- 113
Query: 121 QNEVQWHDHGSLQPQLSRIQAKTREEILQLLRKQREERISKELISLPYKPKAKEHKAKKV 180
AKTREEILQLLRKQREERISKELISLPYKPKAKEHKAKKV
Sbjct: 114 --------------------AKTREEILQLLRKQREERISKELISLPYKPKAKEHKAKKV 153
Query: 181 VSESDKEDQEEVKTLD 196
VSESDKEDQEEVKTLD
Sbjct: 154 VSESDKEDQEEVKTLD 169
>gi|56788397 myelin oligodendrocyte glycoprotein isoform beta4
precursor [Homo sapiens]
Length = 171
Score = 43.5 bits (101), Expect = 1e-04
Identities = 20/36 (55%), Positives = 25/36 (69%)
Query: 105 EEKVKYLQKTRSHSVTQNEVQWHDHGSLQPQLSRIQ 140
EE L+ SHSVTQ+ +QWHDHGSLQP R++
Sbjct: 136 EEAAMELKVEVSHSVTQDWLQWHDHGSLQPPPPRLK 171
>gi|56788395 myelin oligodendrocyte glycoprotein isoform alpha4
precursor [Homo sapiens]
Length = 171
Score = 43.5 bits (101), Expect = 1e-04
Identities = 20/36 (55%), Positives = 25/36 (69%)
Query: 105 EEKVKYLQKTRSHSVTQNEVQWHDHGSLQPQLSRIQ 140
EE L+ SHSVTQ+ +QWHDHGSLQP R++
Sbjct: 136 EEAAMELKVEVSHSVTQDWLQWHDHGSLQPPPPRLK 171
>gi|126362971 serine/threonine kinase 10 [Homo sapiens]
Length = 968
Score = 38.5 bits (88), Expect = 0.004
Identities = 40/161 (24%), Positives = 65/161 (40%), Gaps = 30/161 (18%)
Query: 51 ESQLVLRRDSSQRLPVARPRRSRGS---ENSHSSQ------SFHLASNKNRDIFAEALKI 101
E LRR + L + + R N H Q F N + F L+
Sbjct: 556 EEMRFLRRQELRELRLLQKEEHRNQTQLSNKHELQLEQMHKRFEQEINAKKKFFDTELEN 615
Query: 102 QESEEKVKYLQKTRSHSVTQNEV-------QWHDHGSLQPQLSRIQAKTREEILQLLRKQ 154
E ++K + + + H+V + E Q D+ Q QL ++ + + E+ +L R+Q
Sbjct: 616 LERQQKQQVEKMEQDHAVRRREEARRIRLEQDRDYTRFQEQLKLMKKEVKNEVEKLPRQQ 675
Query: 155 REERISKELISLPYKPKAKEHKAKKVVSESD-----KEDQE 190
R+E + K K +EH KK + + D KED E
Sbjct: 676 RKESM---------KQKMEEHTQKKQLLDRDFVAKQKEDLE 707
>gi|59933284 RUN domain containing 2B [Homo sapiens]
Length = 249
Score = 37.4 bits (85), Expect = 0.008
Identities = 16/23 (69%), Positives = 18/23 (78%)
Query: 112 QKTRSHSVTQNEVQWHDHGSLQP 134
+K +HSVTQ VQWHD GSLQP
Sbjct: 221 EKNGAHSVTQAGVQWHDLGSLQP 243
>gi|153085395 histone deacetylase 4 [Homo sapiens]
Length = 1084
Score = 36.6 bits (83), Expect = 0.014
Identities = 36/143 (25%), Positives = 59/143 (41%), Gaps = 23/143 (16%)
Query: 49 PSESQLVLRRDSSQRLPVARPRRSRGSENSHSSQSFHLASNKNRDIFAEALKIQESEEKV 108
PS + LR D LPVA P + Q LA + + I + L +
Sbjct: 44 PSAVPMDLRLDHQFSLPVAEP-----ALREQQLQQELLALKQKQQIQRQIL--------I 90
Query: 109 KYLQKTRSHSVTQNEVQWHDHGSLQPQLSRIQAKTREEILQLLRKQREERISKELISLPY 168
Q+ Q+E Q H+H ++ Q + K ++E+L+ RK R +EL
Sbjct: 91 AEFQRQHEQLSRQHEAQLHEH--IKQQQEMLAMKHQQELLEHQRKLERHRQEQEL----- 143
Query: 169 KPKAKEHKAKKVVSESDKEDQEE 191
K+H+ +K+ +KE +E
Sbjct: 144 ---EKQHREQKLQQLKNKEKGKE 163
>gi|193794843 BEN domain containing 2 [Homo sapiens]
Length = 799
Score = 36.6 bits (83), Expect = 0.014
Identities = 16/20 (80%), Positives = 16/20 (80%)
Query: 116 SHSVTQNEVQWHDHGSLQPQ 135
S SVTQ VQWHDH SLQPQ
Sbjct: 81 SGSVTQAGVQWHDHSSLQPQ 100
>gi|87298937 centrosomal protein 110kDa [Homo sapiens]
Length = 2325
Score = 36.6 bits (83), Expect = 0.014
Identities = 41/158 (25%), Positives = 72/158 (45%), Gaps = 15/158 (9%)
Query: 34 ANLAKQFW--ISASMYPPSESQLVLRRDSSQRLPVARPRRSRGSENSHSSQSFHLASNKN 91
A+L KQF ++ S + E+Q V R + + + + + + G E + L + N
Sbjct: 841 ADLQKQFSEILARSKWERDEAQ-VRERKLQEEMALQQEKLATGQEEFRQACERALEARMN 899
Query: 92 RDIFAEALKIQESEEKVKYLQKTRSHSVTQNEVQWHDHGSLQ---PQLSRIQAKTREEIL 148
D +IQ+ E ++ YLQ+ + E+Q LQ + RI A+ RE L
Sbjct: 900 FDKRQHEARIQQMENEIHYLQENLK---SMEEIQGLTDLQLQEADEEKERILAQLRE--L 954
Query: 149 QLLRKQREERISKELISLPYKPKAKEHKAKKVVSESDK 186
+ +K + + +++ L + K K KK V+ SDK
Sbjct: 955 EKKKKLEDAKSQEQVFGLDKELK----KLKKAVATSDK 988
>gi|239745095 PREDICTED: hypothetical protein LOC645202 [Homo
sapiens]
Length = 570
Score = 36.2 bits (82), Expect = 0.018
Identities = 27/99 (27%), Positives = 47/99 (47%), Gaps = 8/99 (8%)
Query: 100 KIQESEEKVK----YLQKTRSHSVTQNEVQWHDHGSLQPQ---LSRIQAKTREEILQLLR 152
KI+E EEK++ +Q+ Q E W +Q Q + R + K RE+ ++ R
Sbjct: 391 KIREQEEKIREQEEMMQEQEEKMGEQEEKMWEQEEEMQEQEEKMRRQEEKIREQEKKI-R 449
Query: 153 KQREERISKELISLPYKPKAKEHKAKKVVSESDKEDQEE 191
+Q E+ +E + + K E + K E+ ++QEE
Sbjct: 450 EQEEKIREQEEMMQEQEEKMGEQEGKMCEQEAKMQEQEE 488
Score = 28.1 bits (61), Expect = 5.0
Identities = 25/99 (25%), Positives = 44/99 (44%), Gaps = 8/99 (8%)
Query: 100 KIQESEEKVK----YLQKTRSHSVTQNEVQWHDHGSLQPQ---LSRIQAKTREEILQLLR 152
KI+E EEK++ +Q+ Q +Q Q + R + K RE+ ++ R
Sbjct: 447 KIREQEEKIREQEEMMQEQEEKMGEQEGKMCEQEAKMQEQEEKMRRQEEKIREQEKKI-R 505
Query: 153 KQREERISKELISLPYKPKAKEHKAKKVVSESDKEDQEE 191
+Q E+ +E + + K E + K E ++QEE
Sbjct: 506 EQEEKIREQEEMMQEQEEKMWEQEEKMCEQEEKMQEQEE 544
>gi|238908517 colony stimulating factor 2 receptor alpha chain
isoform f precursor [Homo sapiens]
Length = 434
Score = 36.2 bits (82), Expect = 0.018
Identities = 16/25 (64%), Positives = 19/25 (76%)
Query: 116 SHSVTQNEVQWHDHGSLQPQLSRIQ 140
SHSVTQ VQWH+ GSLQP R++
Sbjct: 317 SHSVTQAGVQWHNLGSLQPPSPRLK 341
>gi|195976782 Paf1/RNA polymerase II complex component [Homo
sapiens]
Length = 710
Score = 35.8 bits (81), Expect = 0.024
Identities = 42/171 (24%), Positives = 66/171 (38%), Gaps = 37/171 (21%)
Query: 57 RRDSSQRLP-VARPRRSRGSENSHSSQSFHLASNKNRDIFAEALKIQESEEKVKYLQKT- 114
R DS ++ P V++P S SE S S + SNKN+ +A KI++ K KT
Sbjct: 76 RSDSEEKEPPVSQPAASSDSETSDSDDEWTFGSNKNKK-KGKARKIEKKGTMKKQANKTA 134
Query: 115 -----------RSHSVTQNEVQWHDHGSLQPQLSRIQAKTREE----------------- 146
S + + EV D S + EE
Sbjct: 135 SSGSSDKDSSAESSAPEEGEVSDSDSNSSSSSSDSDSSSEDEEFHDGYGEDLMGDEEDRA 194
Query: 147 -ILQLLRKQREERI-----SKELISLPYKPKAKEHKAKKVVSESDKEDQEE 191
+ Q+ K+RE+ + +E++ ++ K K AKK + K+ QEE
Sbjct: 195 RLEQMTEKEREQELFNRIEKREVLKRRFEIKKKLKTAKKKEKKEKKKKQEE 245
>gi|157151755 ribonuclease P/MRP 30kDa subunit isoform a [Homo
sapiens]
Length = 322
Score = 35.4 bits (80), Expect = 0.031
Identities = 19/47 (40%), Positives = 28/47 (59%)
Query: 116 SHSVTQNEVQWHDHGSLQPQLSRIQAKTREEILQLLRKQREERISKE 162
SHSVTQ VQWH+ GSLQP ++ + + + +QR+ IS +
Sbjct: 267 SHSVTQAGVQWHNLGSLQPLPLGLKPSSHLSLPRTRIQQRQLLISHQ 313
>gi|116256481 TNFAIP3 interacting protein 1 [Homo sapiens]
Length = 636
Score = 34.7 bits (78), Expect = 0.053
Identities = 24/92 (26%), Positives = 47/92 (51%), Gaps = 2/92 (2%)
Query: 97 EALKIQESEEKVKYLQKTRSHSVTQNEVQWHDH-GSLQPQLSRIQAKTREEILQLLRKQR 155
E + + +E+KVK L++ RS + N+ QW H S++ Q + + R+++ L ++
Sbjct: 292 EVVALGAAEKKVKMLEQQRSELLEVNK-QWDQHFRSMKQQYEQKITELRQKLADLQKQVT 350
Query: 156 EERISKELISLPYKPKAKEHKAKKVVSESDKE 187
+ +E + K K+K + E+DKE
Sbjct: 351 DLEAEREQKQRDFDRKLLLAKSKIEMEETDKE 382
>gi|148746195 trichohyalin [Homo sapiens]
Length = 1943
Score = 34.7 bits (78), Expect = 0.053
Identities = 22/92 (23%), Positives = 44/92 (47%)
Query: 100 KIQESEEKVKYLQKTRSHSVTQNEVQWHDHGSLQPQLSRIQAKTREEILQLLRKQREERI 159
++QE EE+++ L++ Q E Q + QL R Q + R E + R+Q+E R
Sbjct: 270 ELQEEEEQLRKLERQELRRERQEEEQQQQRLRREQQLRRKQEEERREQQEERREQQERRE 329
Query: 160 SKELISLPYKPKAKEHKAKKVVSESDKEDQEE 191
+E + +E + ++ + +E++ E
Sbjct: 330 QQEERREQQLRREQEERREQQLRREQEEERRE 361
Score = 34.3 bits (77), Expect = 0.070
Identities = 33/144 (22%), Positives = 61/144 (42%), Gaps = 15/144 (10%)
Query: 51 ESQLVLRRDSSQRLPVARPRRSRGSENSHSSQSFHLASNKNRDIFAEALKIQESEEKVKY 110
E QL+ R+ R R+ R E H Q R E +++ E + K+
Sbjct: 1341 EEQLLQEREEQPLRRQERDRKFREEELRHQEQG--------RKFLEEEQRLRRQERERKF 1392
Query: 111 LQKTRSHSVTQNEVQWHDHGSL-----QPQLSRIQA--KTREEILQLLRKQREERISKEL 163
L++ + + E Q + QLSR + K REE Q+ R++RE + +E
Sbjct: 1393 LKEEQQLRCQEREQQLRQDRDRKFREEEQQLSRQERDRKFREEEQQVRRQERERKFLEEE 1452
Query: 164 ISLPYKPKAKEHKAKKVVSESDKE 187
L + K + ++++ E +++
Sbjct: 1453 QQLRQERHRKFREEEQLLQEREEQ 1476
Score = 33.5 bits (75), Expect = 0.12
Identities = 29/140 (20%), Positives = 59/140 (42%), Gaps = 1/140 (0%)
Query: 51 ESQLVLRRDSSQRLPVARPRRSRGSENSHSSQSFHLASNKNRDI-FAEALKIQESEEKVK 109
+ Q + R++ Q+L R R+ R E + + RD F E +E+ +
Sbjct: 1600 DEQQLRRQEGQQQLRQERDRKFREDEQLLQEREEQQLHRQERDRKFLEEEPQLRRQEREQ 1659
Query: 110 YLQKTRSHSVTQNEVQWHDHGSLQPQLSRIQAKTREEILQLLRKQREERISKELISLPYK 169
L+ R + E + Q + K REE QL R++RE + +E L +
Sbjct: 1660 QLRHDRDRKFREEEQLLQEGEEQQLRRQERDRKFREEEQQLRRQERERKFLQEEQQLRRQ 1719
Query: 170 PKAKEHKAKKVVSESDKEDQ 189
++ + ++ + + +++Q
Sbjct: 1720 ELERKFREEEQLRQETEQEQ 1739
Score = 29.6 bits (65), Expect = 1.7
Identities = 25/93 (26%), Positives = 45/93 (48%), Gaps = 21/93 (22%)
Query: 97 EALKIQESEEKVKYLQKTRSHSVTQNEVQWHDHGSLQPQLSRIQAKTREEILQLLRKQRE 156
+ LK QE EE+++ Q+ RS + QL R Q + RE QLL+++ E
Sbjct: 517 QRLKRQEEEERLQ--QRLRS----------------EQQLRREQEERRE---QLLKREEE 555
Query: 157 ERISKELISLPYKPKAKEHKAKKVVSESDKEDQ 189
+R+ +E K + +E + + + E ++ Q
Sbjct: 556 KRLEQERREQRLKREQEERRDQLLKREEERRQQ 588
Score = 28.5 bits (62), Expect = 3.8
Identities = 27/140 (19%), Positives = 59/140 (42%), Gaps = 11/140 (7%)
Query: 56 LRRDSSQRLPVARPRRSRGSENSHSSQSFHLASNKNRDIFAEALKIQESEEKVKYLQKTR 115
L+++ Q L R +R R Q + K ++ E ++ E + + LQ+
Sbjct: 996 LQQEEEQLLREEREKRRR--------QEWERQYRKKDELQQEEEQLLREEREKRRLQERE 1047
Query: 116 SHSVTQNEVQWHDHGSLQPQLSRIQAKTREEILQLLRKQREERISKELISLPYKPKAKEH 175
+ E+Q + L + + + R+E+ + RK+ E + +E + K +
Sbjct: 1048 RQYREEEELQQEEEQLLGEER---ETRRRQELERQYRKEEELQQEEEQLLREEPEKRRRQ 1104
Query: 176 KAKKVVSESDKEDQEEVKTL 195
+ ++ E ++ QEE + L
Sbjct: 1105 ERERQCREEEELQQEEEQLL 1124
Score = 27.7 bits (60), Expect = 6.5
Identities = 29/135 (21%), Positives = 57/135 (42%), Gaps = 19/135 (14%)
Query: 57 RRDSSQRLPVARPRRSRGSENSHSSQSFHLASNKNRDIFAEALKIQESEEKVKYLQKTRS 116
RRD R + R+ R + + + E +QE EE+++ ++ +
Sbjct: 869 RRDQKWRWQLEEERKRR-------RHTLYAKPALQEQLRKEQQLLQEEEEELQREEREKR 921
Query: 117 HSVTQNEVQWHDHGSLQPQLSRIQAKTREEILQLLRKQREERISKELISLPYKPKAKEHK 176
Q E Q+ + LQ +E QLLR++RE+R +E K K + K
Sbjct: 922 RRQEQ-ERQYREEEQLQ-----------QEEEQLLREEREKRRRQERERQYRKDKKLQQK 969
Query: 177 AKKVVSESDKEDQEE 191
++++ E ++ + +
Sbjct: 970 EEQLLGEEPEKRRRQ 984
Score = 27.7 bits (60), Expect = 6.5
Identities = 20/95 (21%), Positives = 48/95 (50%), Gaps = 10/95 (10%)
Query: 97 EALKIQESEEKVKYLQKTRSHSVTQNEVQWHDHGSLQPQLSRIQAKTREEILQLLRKQRE 156
E L+ + E++++ + R + Q + L+PQ + + EE LQL +++E
Sbjct: 1777 EQLRQEREEQQLRSQESDRKFREEEQLRQEREEQQLRPQQRDGKYRWEEEQLQL--EEQE 1834
Query: 157 ERISKELISLPYKPKAKEHKAKKVVSESDKEDQEE 191
+R+ +E + ++++A++ + +K +EE
Sbjct: 1835 QRLRQE--------RDRQYRAEEQFATQEKSRREE 1861
Score = 27.3 bits (59), Expect = 8.5
Identities = 22/96 (22%), Positives = 48/96 (50%), Gaps = 5/96 (5%)
Query: 99 LKIQESEEKVKYLQKTRSHSVTQNEVQWHDHG-SLQPQLSRIQAKTREEILQLLRKQREE 157
LK++E E + + Q+ R + + + + + Q + R+Q + R E Q LR+++EE
Sbjct: 489 LKLEEEERREQ--QERREQQLRREQEERREQRLKRQEEEERLQQRLRSE--QQLRREQEE 544
Query: 158 RISKELISLPYKPKAKEHKAKKVVSESDKEDQEEVK 193
R + L K +E + +++ E ++ + +K
Sbjct: 545 RREQLLKREEEKRLEQERREQRLKREQEERRDQLLK 580
>gi|104526627 triadin [Homo sapiens]
Length = 729
Score = 34.3 bits (77), Expect = 0.070
Identities = 24/99 (24%), Positives = 51/99 (51%), Gaps = 11/99 (11%)
Query: 102 QESEEKVKYLQKTRSHSVTQNEVQWHDHGSLQPQLS-RIQAKTREEILQLLRKQ----RE 156
++ +EKV+ +K + + +++ + + + +AKT E+ + +K+ ++
Sbjct: 168 EKGKEKVREKEKPEKKATHKEKIEKKEKPETKTLAKEQKKAKTAEKSEEKTKKEVKGGKQ 227
Query: 157 ERIS------KELISLPYKPKAKEHKAKKVVSESDKEDQ 189
E++ KE+ P KPK KE K K VS+ +++DQ
Sbjct: 228 EKVKQTAAKVKEVQKTPSKPKEKEDKEKAAVSKHEQKDQ 266
Score = 28.9 bits (63), Expect = 2.9
Identities = 22/87 (25%), Positives = 42/87 (48%), Gaps = 5/87 (5%)
Query: 111 LQKTRSHSVTQNEVQWHDHGSLQPQLSRIQAKTREEILQLLRKQREERISKELISLPYKP 170
L+K H + E Q +Q +++ + + +E ++ K ++ KE I KP
Sbjct: 138 LRKKEIHK-DKTEKQEKPERKIQTKVTHKEKEKGKEKVREKEKPEKKATHKEKIEKKEKP 196
Query: 171 K----AKEHKAKKVVSESDKEDQEEVK 193
+ AKE K K +S+++ ++EVK
Sbjct: 197 ETKTLAKEQKKAKTAEKSEEKTKKEVK 223
>gi|229577273 BUD13 homolog isoform 2 [Homo sapiens]
Length = 485
Score = 33.9 bits (76), Expect = 0.091
Identities = 42/188 (22%), Positives = 81/188 (43%), Gaps = 14/188 (7%)
Query: 5 PSEEPSGRKESQEMCPPGLLVFAGSSEQDANLAKQFWI----SASMYPPSESQLVL---R 57
P P R ++ PP SS+ D + ++ +A MY +++ LVL +
Sbjct: 243 PRNRPRHRSSDSDLSPPRRRQRTKSSDSDLSPPRRSQPPGKKAAHMYSGAKTGLVLTDIQ 302
Query: 58 RDSSQRLPVARPRRSRGSENSHSSQSFHLASNKNRDIFAEALKIQESEEKVK-----YLQ 112
R+ + + + +E ++ F S + R++ E L+ + EK Y Q
Sbjct: 303 REQQELKEQDQETMAFEAEFQYAETVFRDKSGRKRNLKLERLEQRRKAEKDSERDELYAQ 362
Query: 113 KTRSHSVTQNEVQWHDHGSLQPQLSRIQAKTREEILQLLRKQREERISKELISLPYKPKA 172
+ + ++ + Q + + Q + E++ ++LR+Q ER + + K KA
Sbjct: 363 WGKGLAQSRQQQQNVEDAMKEMQKPLARYIDDEDLDRMLREQ--EREGDPMANFIKKNKA 420
Query: 173 KEHKAKKV 180
KE+K KKV
Sbjct: 421 KENKNKKV 428
>gi|14249338 BUD13 homolog isoform 1 [Homo sapiens]
Length = 619
Score = 33.9 bits (76), Expect = 0.091
Identities = 42/188 (22%), Positives = 81/188 (43%), Gaps = 14/188 (7%)
Query: 5 PSEEPSGRKESQEMCPPGLLVFAGSSEQDANLAKQFWI----SASMYPPSESQLVL---R 57
P P R ++ PP SS+ D + ++ +A MY +++ LVL +
Sbjct: 377 PRNRPRHRSSDSDLSPPRRRQRTKSSDSDLSPPRRSQPPGKKAAHMYSGAKTGLVLTDIQ 436
Query: 58 RDSSQRLPVARPRRSRGSENSHSSQSFHLASNKNRDIFAEALKIQESEEKVK-----YLQ 112
R+ + + + +E ++ F S + R++ E L+ + EK Y Q
Sbjct: 437 REQQELKEQDQETMAFEAEFQYAETVFRDKSGRKRNLKLERLEQRRKAEKDSERDELYAQ 496
Query: 113 KTRSHSVTQNEVQWHDHGSLQPQLSRIQAKTREEILQLLRKQREERISKELISLPYKPKA 172
+ + ++ + Q + + Q + E++ ++LR+Q ER + + K KA
Sbjct: 497 WGKGLAQSRQQQQNVEDAMKEMQKPLARYIDDEDLDRMLREQ--EREGDPMANFIKKNKA 554
Query: 173 KEHKAKKV 180
KE+K KKV
Sbjct: 555 KENKNKKV 562
>gi|30089940 Golgi autoantigen, golgin subfamily a, 3 [Homo sapiens]
Length = 1498
Score = 33.9 bits (76), Expect = 0.091
Identities = 29/122 (23%), Positives = 62/122 (50%), Gaps = 16/122 (13%)
Query: 87 ASNKNRDIFAEALKIQESEEKVKYLQKTRSHSVTQNEVQWHD----HGSLQPQLSRIQAK 142
A + R A +L++ E +++++ + H V + + + D G ++++ QA+
Sbjct: 1202 AGHNRRHFKAASLELSEVKKELQ----AKEHLVQKLQAEADDLQIREGKHSQEIAQFQAE 1257
Query: 143 TREEI--LQLLRKQREERISK------ELISLPYKPKAKEHKAKKVVSESDKEDQEEVKT 194
E LQLL+KQ +E++SK E+ +L ++ KE + + + + D +Q+ K
Sbjct: 1258 LAEARAQLQLLQKQLDEQLSKQPVGNQEMENLKWEVDQKEREIQSLKQQLDLTEQQGRKE 1317
Query: 195 LD 196
L+
Sbjct: 1318 LE 1319
>gi|222418637 golgi autoantigen, golgin subfamily a-like [Homo
sapiens]
Length = 750
Score = 33.5 bits (75), Expect = 0.12
Identities = 24/96 (25%), Positives = 44/96 (45%), Gaps = 9/96 (9%)
Query: 100 KIQESEEKV----KYLQKTRSHSVTQNEVQWHDHGSLQPQLSRIQAKTREEILQLLRKQR 155
KI+E EEKV + +++ Q E W ++ Q +IQ + + +R+Q
Sbjct: 578 KIREQEEKVWRQEEKIREQEEKRQEQEEKMWKQEEKIREQEEKIQEQEEK-----IREQE 632
Query: 156 EERISKELISLPYKPKAKEHKAKKVVSESDKEDQEE 191
E+ +E ++ + K E + K E ++QEE
Sbjct: 633 EKIREQEEMTQEQEEKMGEQEEKMCEQEEKMQEQEE 668
Score = 30.8 bits (68), Expect = 0.77
Identities = 21/101 (20%), Positives = 45/101 (44%), Gaps = 3/101 (2%)
Query: 94 IFAEALKIQESEEKVKYLQKT---RSHSVTQNEVQWHDHGSLQPQLSRIQAKTREEILQL 150
++ + KI+E EEK++ ++ + + + E W + + Q + + R+E
Sbjct: 512 VWRQEEKIREQEEKIREQEEKMWRQEEKIREQEEMWREEEKMHEQEKIWEEEKRQEQEDK 571
Query: 151 LRKQREERISKELISLPYKPKAKEHKAKKVVSESDKEDQEE 191
+ +Q E+ +E + K +E + K+ E QEE
Sbjct: 572 MWRQEEKIREQEEKVWRQEEKIREQEEKRQEQEEKMWKQEE 612
Score = 28.1 bits (61), Expect = 5.0
Identities = 22/92 (23%), Positives = 43/92 (46%), Gaps = 8/92 (8%)
Query: 100 KIQESEEKVKYLQKTRSHSVTQNEVQWHDHGSLQPQLSRIQAKTREEILQLLRKQREERI 159
KIQE EEK++ ++ + Q G + ++ + K +E+ + R +EE+I
Sbjct: 620 KIQEQEEKIREQEEKIREQEEMTQEQEEKMGEQEEKMCEQEEKMQEQEETMWR--QEEKI 677
Query: 160 SKELISLPYKPKAKEHKAKKVVSESDKEDQEE 191
++ + K +E + K E ++QEE
Sbjct: 678 REQ------EKKIREQEEKIREQEEMMQEQEE 703
>gi|7656977 calcitonin gene-related peptide-receptor component
protein isoform a [Homo sapiens]
Length = 148
Score = 33.5 bits (75), Expect = 0.12
Identities = 38/151 (25%), Positives = 69/151 (45%), Gaps = 22/151 (14%)
Query: 50 SESQLVLRRDSSQRLPVARPRRSRGSENSHSS--QSFHLASNKNRDIFAEALKIQESEEK 107
+ S L+ + Q L + +R +N HSS Q+ + + + ++ +S E
Sbjct: 6 ANSALLSNYEVFQLLTDLKEQRKESGKNKHSSGQQNLNTITYETLKYISKTPCRHQSPEI 65
Query: 108 VK-YLQKTRSHSVTQNEVQWHDHGSLQPQLSRIQAKTREEILQLLRKQREERISKELIS- 165
V+ +L +SH +T+ E + QL + T EI QL+ ++ EER+++E I
Sbjct: 66 VREFLTALKSHKLTKAE---------KLQLLNHRPVTAVEI-QLMVEESEERLTEEQIEA 115
Query: 166 --------LPYKPKAKEHKAKKVVSESDKED 188
LP +P+A++ K D+ED
Sbjct: 116 LLHTVTSILPAEPEAEQKKNTNSNVAMDEED 146
>gi|146260271 hypothetical protein LOC129881 [Homo sapiens]
Length = 552
Score = 33.5 bits (75), Expect = 0.12
Identities = 28/151 (18%), Positives = 69/151 (45%), Gaps = 10/151 (6%)
Query: 47 YPPSESQLVLRRDSSQRLPVARPRRSRGSENSHSSQSFHLASNKNRDIF--AEALKIQES 104
Y +++ + R+++ + + R + + E H S+ L +++ I E + +E
Sbjct: 235 YEEKDAEEIKRQNALYEIEM-RKKLEKKREEMHESRRRFLEHMQDKHIIKAVEQQQQEEE 293
Query: 105 EEKVKYLQKTRSHSVTQNEVQWHDHGSLQPQLSRIQAKTREEILQLLRKQREERISKELI 164
+EK++ K + + + + + + R+ K RE I L + +E++ E +
Sbjct: 294 DEKMRKFIKAKKRLIQMGKEK-------EAETHRLMEKRRERIHNFLSELLKEKLDNEDM 346
Query: 165 SLPYKPKAKEHKAKKVVSESDKEDQEEVKTL 195
+ E + +K E D++++ E+KT+
Sbjct: 347 IIARDIAEAEAEWEKREREKDEKNKAELKTI 377
>gi|47578099 selenoprotein N, 1 isoform 1 precursor [Homo sapiens]
Length = 590
Score = 33.1 bits (74), Expect = 0.16
Identities = 16/23 (69%), Positives = 16/23 (69%)
Query: 114 TRSHSVTQNEVQWHDHGSLQPQL 136
T S SVTQ VQW H SLQPQL
Sbjct: 100 TGSCSVTQTGVQWCSHSSLQPQL 122
>gi|153945728 microtubule-associated protein 1B [Homo sapiens]
Length = 2468
Score = 33.1 bits (74), Expect = 0.16
Identities = 29/128 (22%), Positives = 60/128 (46%), Gaps = 8/128 (6%)
Query: 75 SENSHSSQSFHLASNKNRDIFAEALKIQ--ESEEKVKYLQKTRSHSVTQNEVQWHDHGSL 132
S+ S +A + D+ +A K + + E KVK K + EV + +
Sbjct: 609 SKEEPSPVKAEVAEKQATDVKPKAAKEKTVKKETKVKPEDKKEEKEKPKKEVAKKEDKTP 668
Query: 133 -----QPQLSRIQAKTREEILQLLRKQREERISKELISLPYKPKAKEHKAKKVVSESDKE 187
+P+ ++ + ++EI + +K+ ++ + KE K + K+ + KK V + +KE
Sbjct: 669 IKKEEKPKKEEVKKEVKKEIKKEEKKEPKKEVKKETPPKEVKKEVKKEE-KKEVKKEEKE 727
Query: 188 DQEEVKTL 195
++E+K L
Sbjct: 728 PKKEIKKL 735
>gi|56118310 nuclear casein kinase and cyclin-dependent kinase
substrate 1 [Homo sapiens]
Length = 243
Score = 32.7 bits (73), Expect = 0.20
Identities = 28/121 (23%), Positives = 50/121 (41%), Gaps = 6/121 (4%)
Query: 71 RSRGSENSHSSQSFHLASNKNRDIFAEALKIQESEEKVKYLQKTRSHSVTQNEVQWHDHG 130
R G S A NK R ++SE+K +K SHS +E + DH
Sbjct: 28 RDSGPPTKKIRSSPREAKNKRRSGKNSQEDSEDSEDKDVKTKKDDSHSAEDSEDEKEDHK 87
Query: 131 SLQPQ---LSRIQAKTREEILQLLRKQREERISKELISLPYKPKAKEHKAKKVVSESDKE 187
+++ Q S+ +K RE +++ + + E+ E P++ K ++ + D
Sbjct: 88 NVRQQRQAASKAASKQREMLMEDVGSEEEQEEEDE---APFQEKDSGSDEDFLMEDDDDS 144
Query: 188 D 188
D
Sbjct: 145 D 145
>gi|14150064 polymerase (RNA) III (DNA directed) polypeptide G
(32kD) like [Homo sapiens]
Length = 218
Score = 32.7 bits (73), Expect = 0.20
Identities = 20/84 (23%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Query: 109 KYLQKTRSHSVTQNEVQWHDHGSLQPQLSRIQA-KTREEILQLLRKQREERISKELISLP 167
+Y K + N + W+ P+ +I+ K ++E + +L +R + +++
Sbjct: 89 RYSDKYQMSGPIDNAIDWNPDWRRLPRELKIRVRKLQKERITILLPKRPPKTTEDKEETI 148
Query: 168 YKPKAKEHKAKKVVSESDKEDQEE 191
K + E K ++V SE D+E +EE
Sbjct: 149 QKLETLEKKEEEVTSEEDEEKEEE 172
>gi|190194355 p90 autoantigen [Homo sapiens]
Length = 905
Score = 32.0 bits (71), Expect = 0.35
Identities = 22/88 (25%), Positives = 47/88 (53%), Gaps = 9/88 (10%)
Query: 97 EALKIQESEEKVKYLQKTRSHSVTQNEVQWHDHGSLQPQLSRIQAKTR--EEILQLLRKQ 154
E+LK Q + + ++K QN++ +H +L+ + KT+ EE ++ L+K+
Sbjct: 767 ESLKEQNEKSIAQLIEKEEQRKEVQNQLVDREH-----KLANLHQKTKVQEEKIKTLQKE 821
Query: 155 REERISKELISLPYKPKAKEHKAKKVVS 182
RE++ +E I + K ++ + +K +S
Sbjct: 822 REDK--EETIDILRKELSRTEQIRKELS 847
>gi|239756241 PREDICTED: golgi autoantigen, golgin subfamily a-like
[Homo sapiens]
Length = 899
Score = 32.0 bits (71), Expect = 0.35
Identities = 23/95 (24%), Positives = 41/95 (43%), Gaps = 7/95 (7%)
Query: 97 EALKIQESEEKVKYLQKTRSHSVTQNEVQWHDHGSLQPQLSRIQAKTREEILQLLRKQRE 156
E K+QE EEK+ +K + Q + W + + R + K E +++R+Q E
Sbjct: 675 EQEKMQEQEEKIWEQEKMEKKTQEQEKKTWDQEKMREEESMREREKKMREEEEMMREQEE 734
Query: 157 ERISKELISLPYKPKAKEHKAKKVVSESDKEDQEE 191
+ +E K +E + + E +QEE
Sbjct: 735 KMQEQE-------EKMQEQEEEMWEQEEKMWEQEE 762
>gi|4506885 semenogelin II precursor [Homo sapiens]
Length = 582
Score = 32.0 bits (71), Expect = 0.35
Identities = 29/125 (23%), Positives = 56/125 (44%), Gaps = 15/125 (12%)
Query: 75 SENSHSSQSFHLASNKNRDIFAEALKIQESEEKVKYLQKTRSHSVTQNEVQWH----DHG 130
S + Q H + +D+ ++ IQ +EEK+ H +QN+V H +HG
Sbjct: 290 SSRTEERQLHHGEKSVQKDVSKGSISIQ-TEEKI--------HGKSQNQVTIHSQDQEHG 340
Query: 131 SLQPQLSRIQAKTREEILQLLRKQREERISKELISLPYKPK--AKEHKAKKVVSESDKED 188
+ ++S + T E L K ++ +SK IS+ + + K ++ S++ +
Sbjct: 341 HKENKISYQSSSTEERHLNCGEKGIQKGVSKGSISIQTEEQIHGKSQNQVRIPSQAQEYG 400
Query: 189 QEEVK 193
+E K
Sbjct: 401 HKENK 405
Score = 28.5 bits (62), Expect = 3.8
Identities = 40/187 (21%), Positives = 75/187 (40%), Gaps = 26/187 (13%)
Query: 28 GSSEQDANLAKQFWI---SASMYPPSESQLVLRRDSSQRLPVARP------RRSRGSENS 78
G S Q +N K+ W+ S S +Q + SQ V + ++ R ++NS
Sbjct: 154 GLSSQCSNTEKRLWVHGLSKEQASASGAQKGRTQGGSQSSYVLQTEELVVNKQQRETKNS 213
Query: 79 HSSQSFHLASNKNRDIFAEAL----------KIQESEEKV-----KYLQKTRSHSVTQNE 123
H ++ + R+ + L ++Q + + + L ++ T+N
Sbjct: 214 HQNKGHYQNVVDVREEHSSKLQTSLHPAHQDRLQHGPKDIFTTQDELLVYNKNQHQTKNL 273
Query: 124 VQWHDHGSLQPQLSRIQAKTREEILQLLRKQREERISKELISLPYKPKAKEHKAKKVVSE 183
Q +HG ++S ++T E L K ++ +SK IS+ + K +V
Sbjct: 274 SQDQEHGRKAHKISYPSSRTEERQLHHGEKSVQKDVSKGSISIQTEEKIHGKSQNQVTIH 333
Query: 184 SDKEDQE 190
S +DQE
Sbjct: 334 S--QDQE 338
>gi|14670392 bromodomain adjacent to zinc finger domain, 1B [Homo
sapiens]
Length = 1483
Score = 31.6 bits (70), Expect = 0.45
Identities = 30/130 (23%), Positives = 56/130 (43%), Gaps = 26/130 (20%)
Query: 69 PRRSRGSENSHSSQSFHLA-----------SNKNRD--------IFAEALKIQESEEKVK 109
PR S G+ + S HL NK+R+ + ++ ++ SE++ +
Sbjct: 454 PRNSGGTPRTSSKPHKHLPPAALHLIAYYKENKDREDKRSALSCVISKTARLLSSEDRAR 513
Query: 110 YLQKTRSHSVTQNEVQWHDHGSLQPQLSRIQAKT-----REEILQLLRKQREERISKELI 164
++ RS + Q + +H +S Q K REE+ + L+++ +ER KE++
Sbjct: 514 LPEELRS--LVQKRYELLEHKKRWASMSEEQRKEYLKKKREELKKKLKEKAKERREKEML 571
Query: 165 SLPYKPKAKE 174
K K E
Sbjct: 572 ERLEKQKRYE 581
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.307 0.123 0.333
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,635,551
Number of Sequences: 37866
Number of extensions: 317598
Number of successful extensions: 1755
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 158
Number of HSP's that attempted gapping in prelim test: 1593
Number of HSP's gapped (non-prelim): 311
length of query: 196
length of database: 18,247,518
effective HSP length: 97
effective length of query: 99
effective length of database: 14,574,516
effective search space: 1442877084
effective search space used: 1442877084
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.