Guide to the Human Genome
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Name: RUNDC2B Sequence: fasta or formatted (249aa) NCBI GI: 59933284
Description:

RUN domain containing 2B

Referenced in:

Additional Interaction Domain Families

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.8         12           2
 C cysteine            0.4          1           1
 D aspartate           8.4         21           2
 E glutamate           8.0         20           2
 F phenylalanine       3.6          9           1
 G glycine             6.4         16           1
 H histidine           2.0          5           1
 I isoleucine          4.8         12           2
 K lysine              7.6         19           4
 L leucine             6.0         15           2
 M methionine          2.0          5           1
 N asparagine          6.8         17           1
 P proline             5.2         13           2
 Q glutamine           4.4         11           1
 R arginine            3.2          8           1
 S serine             14.9         37           2
 T threonine           4.0         10           1
 V valine              5.6         14           2
 W tryptophan          0.8          2           1
 Y tyrosine            0.8          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   RUN domain containing 2B 
RUNDC2A               0.837   RUN domain containing 2A 
RPP30                 0.049   ribonuclease P/MRP 30kDa subunit isoform a 
LOC100292671          0.047   PREDICTED: similar to CYorf16 protein 
LOC100290384          0.047   PREDICTED: hypothetical protein XP_002348288 
LOC100288465          0.047   PREDICTED: hypothetical protein XP_002343910 
C16orf89              0.047   hypothetical protein LOC146556 isoform 1 
CSF2RA                0.042   colony stimulating factor 2 receptor alpha chain is...
MAP3K15               0.042   mitogen-activated protein kinase kinase kinase 15 [...
PPIL3                 0.038   peptidylprolyl isomerase-like 3 isoform PPIL3a [Homo...
BEND2                 0.036   BEN domain containing 2 
LOC100128682          0.034   PREDICTED: hypothetical protein LOC100128682 
LOC100128682          0.034   PREDICTED: hypothetical protein LOC100128682 
LOC100128682          0.034   PREDICTED: hypothetical protein LOC100128682 
ZNF283                0.032   zinc finger protein 283 
ADARB1                0.032   RNA-specific adenosine deaminase B1 isoform 3 
ADARB1                0.032   RNA-specific adenosine deaminase B1 isoform 2 
DSPP                  0.030   dentin sialophosphoprotein preproprotein 
MOG                   0.030   myelin oligodendrocyte glycoprotein isoform beta4 pr...
MOG                   0.030   myelin oligodendrocyte glycoprotein isoform alpha4 p...
ZNF573                0.030   zinc finger protein 573 
LOC100130208          0.028   PREDICTED: similar to CYorf16 protein 
LOC100130208          0.028   PREDICTED: hypothetical protein 
KIF2A                 0.028   kinesin heavy chain member 2 isoform 2 
KIF2A                 0.028   kinesin heavy chain member 2 isoform 1 
SGCE                  0.025   sarcoglycan, epsilon isoform 1 
C11orf88              0.025   hypothetical protein LOC399949 isoform 1 
CIR1                  0.025   CBF1 interacting corepressor 
FAM133A               0.023   hypothetical protein LOC286499 
ACRC                  0.021   ACRC protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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