CCDC71 5362

Name: CCDC71	Sequence: fasta or formatted (467aa)		NCBI GI: 153791662
Description: coiled-coil domain containing 71		Referenced in: Coiled-Coil Proteins
Composition: Amino acid Percentage Count Longest homopolymer A alanine 16.5 77 2 C cysteine 0.6 3 1 D aspartate 1.9 9 2 E glutamate 2.1 10 2 F phenylalanine 1.1 5 1 G glycine 6.9 32 2 H histidine 1.5 7 1 I isoleucine 1.1 5 1 K lysine 11.6 54 2 L leucine 9.2 43 3 M methionine 1.7 8 1 N asparagine 1.7 8 1 P proline 8.4 39 2 Q glutamine 4.7 22 1 R arginine 9.4 44 2 S serine 7.9 37 2 T threonine 6.2 29 2 V valine 5.8 27 3 W tryptophan 0.6 3 1 Y tyrosine 1.1 5 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 coiled-coil domain containing 71 FLJ36031 0.045 hypothetical protein LOC168455 SRRM2 0.033 splicing coactivator subunit SRm300 LOC100292370 0.031 PREDICTED: hypothetical protein HIST1H1A 0.030 histone cluster 1, H1a HIST1H1E 0.028 histone cluster 1, H1e ARL6IP4 0.027 SRp25 nuclear protein isoform 3 LOC100292062 0.026 PREDICTED: hypothetical protein XP_002346314 HIST1H1B 0.026 histone cluster 1, H1b SFRS8 0.025 splicing factor, arginine/serine-rich 8 H1FOO 0.024 H1 histone family, member O, oocyte-specific SRRM1 0.023 serine/arginine repetitive matrix 1 LOC100290812 0.022 PREDICTED: hypothetical protein XP_002347678 LOC100130360 0.022 PREDICTED: hypothetical protein LOC100288205 0.022 PREDICTED: hypothetical protein XP_002343496 ARL6IP4 0.022 SRp25 nuclear protein isoform 1 NEFH 0.022 neurofilament, heavy polypeptide 200kDa PRG4 0.020 proteoglycan 4 isoform D PRG4 0.020 proteoglycan 4 isoform C PRG4 0.020 proteoglycan 4 isoform B PRG4 0.020 proteoglycan 4 isoform A NOLC1 0.020 nucleolar and coiled-body phosphoprotein 1 ARL6IP4 0.020 SRp25 nuclear protein isoform 4 ARL6IP4 0.020 SRp25 nuclear protein isoform 2 H1F0 0.019 H1 histone family, member 0 FLJ22184 0.019 PREDICTED: hypothetical protein FLJ22184 FLJ22184 0.019 PREDICTED: hypothetical protein FLJ22184 LOC100292035 0.019 PREDICTED: hypothetical protein XP_002345623 SON 0.019 SON DNA-binding protein isoform F SON 0.019 SON DNA-binding protein isoform B Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.