Guide to the Human Genome
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Name: C5orf37 Sequence: fasta or formatted (575aa) NCBI GI: 151101311
Description:

proteome of centriole 5 isoform 1

Referenced in:

Centrosome

Other entries for this name:
alt prot [550aa] proteome of centriole 5 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.9         51           2
 C cysteine            1.2          7           1
 D aspartate           4.2         24           1
 E glutamate           7.5         43           2
 F phenylalanine       2.1         12           2
 G glycine             4.2         24           2
 H histidine           4.5         26           2
 I isoleucine          5.2         30           2
 K lysine              6.4         37           2
 L leucine             6.6         38           2
 M methionine          2.8         16           1
 N asparagine          3.5         20           2
 P proline             5.0         29           2
 Q glutamine           4.3         25           2
 R arginine            4.9         28           1
 S serine             13.0         75           3
 T threonine           5.0         29           1
 V valine              7.7         44           3
 W tryptophan          1.2          7           1
 Y tyrosine            1.7         10           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   proteome of centriole 5 isoform 1 
C5orf37               0.953   proteome of centriole 5 isoform 2 
TPR                   0.022   nuclear pore complex-associated protein TPR 
C10orf118             0.013   CTCL tumor antigen L14-2 
TAF4                  0.013   TBP-associated factor 4 
SYNJ1                 0.013   synaptojanin 1 isoform d 
C14orf4               0.013   chromosome 14 open reading frame 4 
SNAP91                0.013   synaptosomal-associated protein, 91kDa homolog 
MUC16                 0.013   mucin 16 
MUC5AC                0.013   mucin 5AC 
MUC5B                 0.013   mucin 5, subtype B, tracheobronchial 
C9orf75               0.013   hypothetical protein LOC286262 isoform 2 
C9orf75               0.013   hypothetical protein LOC286262 isoform 1 
NKX6-1                0.013   NK6 transcription factor related, locus 1 
CBX2                  0.013   chromobox homolog 2 isoform 1 
IRX3                  0.013   iroquois homeobox 3 
CENPE                 0.013   centromere protein E 
SP5                   0.013   Sp5 transcription factor 
RBM16                 0.013   RNA-binding motif protein 16 
SYNJ1                 0.012   synaptojanin 1 isoform c 
LOC100133756          0.012   PREDICTED: hypothetical protein, partial 
EP400                 0.011   E1A binding protein p400 
MUC12                 0.011   PREDICTED: mucin 12 
MUC12                 0.011   PREDICTED: mucin 12, cell surface associated 
SYN1                  0.011   synapsin I isoform Ia 
SYN1                  0.011   synapsin I isoform Ib 
FHAD1                 0.011   forkhead-associated (FHA) phosphopeptide binding do...
BAT2D1                0.011   HBxAg transactivated protein 2 
DEF6                  0.011   differentially expressed in FDCP 6 homolog 
SHANK1                0.011   SH3 and multiple ankyrin repeat domains 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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