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Search of human proteins with 15055543
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15055543 splicing factor, arginine/serine-rich 2B [Homo
sapiens]
(282 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|15055543 splicing factor, arginine/serine-rich 2B [Homo sapiens] 563 e-161
gi|47271443 splicing factor, arginine/serine-rich 2 [Homo sapiens] 279 2e-75
gi|16905517 FUS interacting protein (serine-arginine rich) 1 iso... 128 6e-30
gi|148612890 serine-arginine repressor protein [Homo sapiens] 121 8e-28
gi|21361282 splicing factor, arginine/serine-rich 4 [Homo sapiens] 108 5e-24
gi|72534660 splicing factor, arginine/serine-rich 7 [Homo sapiens] 103 1e-22
gi|20127499 arginine/serine-rich splicing factor 6 [Homo sapiens] 94 2e-19
gi|5730079 FUS interacting protein (serine-arginine rich) 1 isof... 92 4e-19
gi|86991440 splicing factor, arginine/serine-rich 5 [Homo sapiens] 92 5e-19
gi|86991438 splicing factor, arginine/serine-rich 5 [Homo sapiens] 92 5e-19
gi|133922600 splicing factor, arginine/serine-rich 16 [Homo sapi... 91 9e-19
gi|169161980 PREDICTED: similar to FUS interacting protein (seri... 91 1e-18
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 89 4e-18
gi|242117971 RNA binding motif protein, X-linked-like 1 [Homo sa... 86 4e-17
gi|21361809 RNA binding motif protein, X-linked-like 1 [Homo sap... 86 4e-17
gi|4506901 splicing factor, arginine/serine-rich 3 [Homo sapiens] 85 8e-17
gi|5902076 splicing factor, arginine/serine-rich 1 isoform 1 [Ho... 84 1e-16
gi|50083281 KIAA1853 protein [Homo sapiens] 84 2e-16
gi|56699409 RNA binding motif protein, X-linked [Homo sapiens] 83 3e-16
gi|224548936 hypothetical protein LOC100170229 [Homo sapiens] 82 4e-16
gi|4502847 cold inducible RNA binding protein [Homo sapiens] 82 5e-16
gi|29568103 U1 small nuclear ribonucleoprotein 70 kDa [Homo sapi... 80 2e-15
gi|117938254 BCL2-associated transcription factor 1 isoform 3 [H... 79 4e-15
gi|7661958 BCL2-associated transcription factor 1 isoform 1 [Hom... 79 4e-15
gi|21040326 SON DNA-binding protein isoform F [Homo sapiens] 78 1e-14
gi|21040314 SON DNA-binding protein isoform B [Homo sapiens] 78 1e-14
gi|169218320 PREDICTED: similar to BCL2-associated transcription... 75 5e-14
gi|42741684 zinc finger protein 265 isoform 1 [Homo sapiens] 75 5e-14
gi|117938251 BCL2-associated transcription factor 1 isoform 2 [H... 75 6e-14
gi|38488727 arginine/serine-rich coiled-coil 1 [Homo sapiens] 73 3e-13
>gi|15055543 splicing factor, arginine/serine-rich 2B [Homo sapiens]
Length = 282
Score = 563 bits (1451), Expect = e-161
Identities = 282/282 (100%), Positives = 282/282 (100%)
Query: 1 MSCGRPPPDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFV 60
MSCGRPPPDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFV
Sbjct: 1 MSCGRPPPDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFV 60
Query: 61 RFHDRRDAQDAEAAMDGAELDGRELRVQVARYGRRDLPRSRQGEPRGRSRGGGYGRRSRS 120
RFHDRRDAQDAEAAMDGAELDGRELRVQVARYGRRDLPRSRQGEPRGRSRGGGYGRRSRS
Sbjct: 61 RFHDRRDAQDAEAAMDGAELDGRELRVQVARYGRRDLPRSRQGEPRGRSRGGGYGRRSRS 120
Query: 121 YGRRSRSPRRRHRSRSRGPSCSRSRSRSRYRGSRYSRSPYSRSPYSRSRYSRSPYSRSRY 180
YGRRSRSPRRRHRSRSRGPSCSRSRSRSRYRGSRYSRSPYSRSPYSRSRYSRSPYSRSRY
Sbjct: 121 YGRRSRSPRRRHRSRSRGPSCSRSRSRSRYRGSRYSRSPYSRSPYSRSRYSRSPYSRSRY 180
Query: 181 RESRYGGSHYSSSGYSNSRYSRYHSSRSHSKSGSSTSSRSASTSKSSSARRSKSSSVSRS 240
RESRYGGSHYSSSGYSNSRYSRYHSSRSHSKSGSSTSSRSASTSKSSSARRSKSSSVSRS
Sbjct: 181 RESRYGGSHYSSSGYSNSRYSRYHSSRSHSKSGSSTSSRSASTSKSSSARRSKSSSVSRS 240
Query: 241 RSRSRSSSMTRSPPRVSKRKSKSRSRSKRPPKSPEEEGQMSS 282
RSRSRSSSMTRSPPRVSKRKSKSRSRSKRPPKSPEEEGQMSS
Sbjct: 241 RSRSRSSSMTRSPPRVSKRKSKSRSRSKRPPKSPEEEGQMSS 282
>gi|47271443 splicing factor, arginine/serine-rich 2 [Homo sapiens]
Length = 221
Score = 279 bits (713), Expect = 2e-75
Identities = 177/283 (62%), Positives = 189/283 (66%), Gaps = 63/283 (22%)
Query: 1 MSCGRPPPDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFV 60
MS GRPPPDV+GM +LKVDNLTYRTSPD+LRRVFEKYGRVGDVYIPR+ +TK RGFAFV
Sbjct: 1 MSYGRPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFV 60
Query: 61 RFHDRRDAQDAEAAMDGAELDGRELRVQVARYGR-RDLPRSRQGEPRGRSRGGGYGRRSR 119
RFHD+RDA+DA AMDGA LDGRELRVQ+ARYGR D SR+G P R GGG
Sbjct: 61 RFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPDSHHSRRGPPPRRYGGGG------ 114
Query: 120 SYGRRSRSPRRRHRSRSRGPSCSRSRSRSRYRGSRYSRSPYSRSPYSRSRYSRSPYSRSR 179
YGRRSRSPRRR RSRSR SRSRSRSR SRSRYSRS SRSR
Sbjct: 115 -YGRRSRSPRRRRRSRSR----SRSRSRSR----------------SRSRYSRSK-SRSR 152
Query: 180 YRESRYGGSHYSSSGYSNSRYSRYHSSRSHSKSGSSTSSRSASTSKSSSARRSKSSSVSR 239
R SRS SKS RSA SKS S SSVSR
Sbjct: 153 TRS----------------------RSRSTSKS------RSARRSKSKS------SSVSR 178
Query: 240 SRSRSRSSSMTRSPPRVSKRKSKSRSRSKRPPKSPEEEGQMSS 282
SRSRSRS S +RSPP VSKR+SKSRSRSK PPKSPEEEG +SS
Sbjct: 179 SRSRSRSRSRSRSPPPVSKRESKSRSRSKSPPKSPEEEGAVSS 221
>gi|16905517 FUS interacting protein (serine-arginine rich) 1
isoform 2 [Homo sapiens]
Length = 262
Score = 128 bits (321), Expect = 6e-30
Identities = 93/260 (35%), Positives = 132/260 (50%), Gaps = 12/260 (4%)
Query: 15 TLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAA 74
+L V N+ T + LRR F +YG + DVY+P + +T+ PRGFA+V+F D RDA+DA
Sbjct: 11 SLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALHN 70
Query: 75 MDGAELDGRELRVQVARYGRRDLPRSRQGEPRGRSRGGGYGRRSRSYGRRSRSPRRRHRS 134
+D + GR++ +Q A+ G R P + + GR S R R R RS
Sbjct: 71 LDRKWICGRQIEIQFAQ-GDRKTPNQMKAKE---------GRNVYSSSRYDDYDRYR-RS 119
Query: 135 RSRGPSCSRSRSRSRYRGSRYSRSPYSRSPYSRSRYSRSPYSRSRYRESRYGGSHYSSSG 194
RSR RSRSRS R S SP + P R R SRS R++ S S+
Sbjct: 120 RSRSYERRRSRSRSFDYNYRRSYSPRNSRPTGRPRRSRSHSDNDRFKHRNRSFSRSKSNS 179
Query: 195 YSNSRYSRYHSSRSHSKSGSSTSSRSASTSKSSSARRSKSSSVSRSRSRSRSSSMTRSPP 254
S S+ ++ S+S S++ +++ TSK+ S KS S SR + ++S
Sbjct: 180 RSRSKSQPKKEMKAKSRSRSASHTKTRGTSKTDSKTHYKSGSRYEKESRKKEPPRSKSQS 239
Query: 255 R-VSKRKSKSRSRSKRPPKS 273
R S+ +SKSRSRS PKS
Sbjct: 240 RSQSRSRSKSRSRSWTSPKS 259
>gi|148612890 serine-arginine repressor protein [Homo sapiens]
Length = 261
Score = 121 bits (303), Expect = 8e-28
Identities = 97/265 (36%), Positives = 139/265 (52%), Gaps = 21/265 (7%)
Query: 15 TLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAA 74
+L + N+ T P+ LRR F +YG + DVYIP + +T+ PRGFA+V+F D RDA+DA
Sbjct: 11 SLFIRNVADATRPEDLRREFGRYGPIVDVYIPLDFYTRRPRGFAYVQFEDVRDAEDALYN 70
Query: 75 MDGAELDGRELRVQVARYGRRDLPRSRQGEPRGRSRGGGYGRRSRSYGRRSRSPRRRHRS 134
++ + GR++ +Q A+ G R P + + R S S RRSRSP +R R+
Sbjct: 71 LNRKWVCGRQIEIQFAQ-GDRKTPGQMKSKERHPC--------SPSDHRRSRSPSQR-RT 120
Query: 135 RSRGPSCSRSRSRS-RYRGSRYSRSPYSRSPYSRSRYSRSPYSRSRYRESRYGGSHYSSS 193
RSR S R+R RS + SR+ R YS+ S+SR P + R+SR ++ S
Sbjct: 121 RSRSSSWGRNRRRSDSLKESRHRRFSYSQ---SKSRSKSLPRRSTSARQSRTPRRNFGSR 177
Query: 194 GYSNSRYSRYHSSRSHSKSGSSTSSRSASTSKSSSARRSKSSSVSRSRSRSRSSSMTRSP 253
G S S+ S S+S KS SS+ + S+ S + S S++RS +S T S
Sbjct: 178 GRSRSK-SLQKRSKSIGKSQSSSPQKQTSSGTKSRSHGRHSDSIARSPCKS-PKGYTNSE 235
Query: 254 PRVSKRK-----SKSRSRSKRPPKS 273
+V K S SRSRS R S
Sbjct: 236 TKVQTAKHSHFRSHSRSRSYRHKNS 260
>gi|21361282 splicing factor, arginine/serine-rich 4 [Homo sapiens]
Length = 494
Score = 108 bits (270), Expect = 5e-24
Identities = 109/310 (35%), Positives = 140/310 (45%), Gaps = 52/310 (16%)
Query: 16 LKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAM 75
L V+NL+ R S L+ + G V Y K FV + D + A + +
Sbjct: 106 LIVENLSSRCSWQDLKDYMRQAGEV--TYADAHKGRKNEGVIEFVSYSDMKRALEK---L 160
Query: 76 DGAELDGRELRVQVARYG---RRDLPRSRQGEPRGRSRGGGYGRRSRSYGRRSRSPRRRH 132
DG E++GR++R+ + G RR RSR R RSR + R+SRS S+S +
Sbjct: 161 DGTEVNGRKIRLVEDKPGSRRRRSYSRSRS-HSRSRSRSR-HSRKSRSRSGSSKSSHSKS 218
Query: 133 RSRSRGPSCSRSRSRSRYRGSRYSRSPYSRSPY---SRSRYSRSPYSRSRYRE------- 182
RSRSR S SRS+SRSR + S+ SRSP SRSR + SRS+ ++
Sbjct: 219 RSRSRSGSRSRSKSRSRSQSRSRSKKEKSRSPSKEKSRSRSHSAGKSRSKSKDQAEEKIQ 278
Query: 183 ---------SRYGGSHYSSS---------------------GYSNSRYSRYHSSRSHSKS 212
SR H S S G S + R SRS SK
Sbjct: 279 NNDNVGKPKSRSPSRHKSKSKSRSRSQERRVEEEKRGSVSRGRSQEKSLRQSRSRSRSKG 338
Query: 213 GSSTSSRSASTSKSSSARRSKSSSVSRSRSRSRSSSMTRSPPRVSKRKSKSRSRSKRPPK 272
GS + SRS S SK R +S SRSRSRSRS S RS R SKR SK+ S SK+ K
Sbjct: 339 GSRSRSRSRSKSKDKRKGRKRSREESRSRSRSRSKS-ERSRKRGSKRDSKAGS-SKKKKK 396
Query: 273 SPEEEGQMSS 282
+ Q S
Sbjct: 397 EDTDRSQSRS 406
Score = 94.7 bits (234), Expect = 8e-20
Identities = 84/281 (29%), Positives = 119/281 (42%), Gaps = 36/281 (12%)
Query: 18 VDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDG 77
+ L+Y+ + R F+ YG++ +V + G+ FV F D RDA DA ++G
Sbjct: 6 IGRLSYQARERDVERFFKGYGKILEVDLKN--------GYGFVEFDDLRDADDAVYELNG 57
Query: 78 AELDGRELRVQVARYGRRDLPRSRQGEPRGRSRGGGYGRRSR-SYGRRSRSPRR------ 130
+L G + V+ AR RRD G G GY R R YG +R+ R
Sbjct: 58 KDLCGERVIVEHARGPRRD------GSYGSGRSGYGYRRSGRDKYGPPTRTEYRLIVENL 111
Query: 131 ---------RHRSRSRGPSCSRSRSRSRYRGSRYSRSPYSRSPYSRSRYSRSPYSRSRYR 181
+ R G + R YS + + + + + R
Sbjct: 112 SSRCSWQDLKDYMRQAGEVTYADAHKGRKNEGVIEFVSYSDMKRALEKLDGTEVNGRKIR 171
Query: 182 ------ESRYGGSHYSSSGYSNSRYSRYHSSRSHSKSGSSTSSRSASTSKSSSARRSKSS 235
SR S+ S +S SR HS +S S+SGSS SS S S S+S S RS+S
Sbjct: 172 LVEDKPGSRRRRSYSRSRSHSRSRSRSRHSRKSRSRSGSSKSSHSKSRSRSRSGSRSRSK 231
Query: 236 SVSRSRSRSRSSSMTRSPPRVSKRKSKSRSRSKRPPKSPEE 276
S SRS+SRSRS P K +S+S S K KS ++
Sbjct: 232 SRSRSQSRSRSKKEKSRSPSKEKSRSRSHSAGKSRSKSKDQ 272
Score = 87.4 bits (215), Expect = 1e-17
Identities = 72/190 (37%), Positives = 90/190 (47%), Gaps = 13/190 (6%)
Query: 84 ELRVQVARYGRRDLPRSRQGEPRGRSRGGGYGRRSRSYGRRSRSPRRRHRSRSRGPSCSR 143
E R V+R GR RQ R RS+GG RSRS R +R+ R RSR S SR
Sbjct: 312 EKRGSVSR-GRSQEKSLRQSRSRSRSKGGS---RSRSRSRSKSKDKRKGRKRSREESRSR 367
Query: 144 SRSRSRYRGSRYSRSPYSRSPYSRSRYSRSPYSRSRYRESRYGGSHYSSSGYSNSRYSRY 203
SRSRS+ SR S S + + RS+ R S S S
Sbjct: 368 SRSRSKSERSRKRGSKRDSKAGSSKKKKKEDTDRSQSRSPSRSVSKEREHAKSESSQREG 427
Query: 204 HSSRSHSKSGSSTSSRSASTSK------SSSARRSKSSSVSRSRSRSRSSSMTRSPPRVS 257
++ + T SRS S SK S S RSKS+S +RSRS+SRS S +RSP S
Sbjct: 428 RGESENAGTNQETRSRSRSNSKSKPNLPSESRSRSKSASKTRSRSKSRSRSASRSP---S 484
Query: 258 KRKSKSRSRS 267
+ +S+S SRS
Sbjct: 485 RSRSRSHSRS 494
Score = 84.3 bits (207), Expect = 1e-16
Identities = 77/251 (30%), Positives = 112/251 (44%), Gaps = 24/251 (9%)
Query: 47 REPHTKAPRGFAFVRFHDRRDAQD-AEAAMDGAELDGRELRVQVARYGRRDLPRSRQGEP 105
R P + R + R ++D AE + + G+ +R+ + RSR E
Sbjct: 248 RSPSKEKSRSRSHSAGKSRSKSKDQAEEKIQNNDNVGKPKSRSPSRHKSKSKSRSRSQER 307
Query: 106 RGRSRGGGYGRRSRSYGRRSRSPRRRHRSRSRGPSCSRSRSRSRYRGSRYSRSPYSRSPY 165
R G R RS + R + R RSRS+G S SRSRSRS+ + R R
Sbjct: 308 RVEEEKRGSVSRGRSQEKSLR--QSRSRSRSKGGSRSRSRSRSKSKDKRKGRKRSREESR 365
Query: 166 SRSRYSRSPYSRSRYRESRYGGSHYSSSGYSNSRYSRYHSSRSHSKSGSSTSSRSASTSK 225
SRSR SRS+ SR GS S S+ + + + RS S+S S + S+ +K
Sbjct: 366 SRSR------SRSKSERSRKRGSKRDSKAGSSKKKKKEDTDRSQSRSPSRSVSKEREHAK 419
Query: 226 SSSARR--------SKSSSVSRSRSRSRSSSMTRSPPR-------VSKRKSKSRSRSKRP 270
S S++R + ++ +RSRSRS S S P SK +S+S+SRS+
Sbjct: 420 SESSQREGRGESENAGTNQETRSRSRSNSKSKPNLPSESRSRSKSASKTRSRSKSRSRSA 479
Query: 271 PKSPEEEGQMS 281
+SP S
Sbjct: 480 SRSPSRSRSRS 490
>gi|72534660 splicing factor, arginine/serine-rich 7 [Homo sapiens]
Length = 238
Score = 103 bits (258), Expect = 1e-22
Identities = 96/246 (39%), Positives = 116/246 (47%), Gaps = 18/246 (7%)
Query: 12 GMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDA 71
G + V NL L R F YG + V+I R P GFAFV F D RDA+DA
Sbjct: 9 GETKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPP-----GFAFVEFEDPRDAEDA 63
Query: 72 EAAMDGAELDGRELRVQVARYGRRDLPRSRQGEPRGRSRGGGYGRRSRSYGRRSRSPRRR 131
+DG + G +RV+++ R RSR P R R R G +
Sbjct: 64 VRGLDGKVICGSRVRVELSTGMPR---RSRFDRPPAR-RPFDPNDRCYECGEKGHYAYDC 119
Query: 132 HRSRSRGPSCSRSRSRSRYRGSRYSRSPYSRSPYSRSRYSRSPYSRS-RYRESRYGGSHY 190
HR R S SRSRS SR RG RYSRS SRS RSR + SRS R SR
Sbjct: 120 HRYSRRRRSRSRSRSHSRSRGRRYSRSR-SRSRGRRSRSASPRRSRSISLRRSRSASLRR 178
Query: 191 SSSGYSNSRYSRYHSSRSHSKSGSSTSSRSASTSKSSSARRSKSSSVSRSRSRSRSSSMT 250
S SG + + SRY S S S+S S + SR S S +S+S S RSRS S S +
Sbjct: 179 SRSG--SIKGSRYFQSPSRSRSRSRSISRPRS-----SRSKSRSPSPKRSRSPSGSPRRS 231
Query: 251 RSPPRV 256
SP R+
Sbjct: 232 ASPERM 237
>gi|20127499 arginine/serine-rich splicing factor 6 [Homo sapiens]
Length = 344
Score = 93.6 bits (231), Expect = 2e-19
Identities = 96/296 (32%), Positives = 131/296 (44%), Gaps = 49/296 (16%)
Query: 18 VDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDG 77
+ L+Y ++R F YGR+ +V + G+ FV F D RDA DA ++G
Sbjct: 6 IGRLSYNVREKDIQRFFSGYGRLLEVDLKN--------GYGFVEFEDSRDADDAVYELNG 57
Query: 78 AELDGRELRVQVARYGRRDLPRSRQGEPRG-RSRGGGYGRRSRSYGRRSRSPRRRHRSR- 135
EL G + V+ AR RRD R G G RS GGGY R R+ GR P R R
Sbjct: 58 KELCGERVIVEHARGPRRD----RDGYSYGSRSGGGGYSSR-RTSGRDKYGPPVRTEYRL 112
Query: 136 ---SRGPSCS--------RSRSRSRYRGSRYSRS--------PYSRSPYSRSRYSRSPYS 176
+ CS R Y + R+ YS + + + +
Sbjct: 113 IVENLSSRCSWQDLKDFMRQAGEVTYADAHKERTNEGVIEFRSYSDMKRALDKLDGTEIN 172
Query: 177 RSRYR--ESRYGGSHYSSSGYSNSRYSRYHSSRSHSKSGSSTSSRSASTSKSSSARRSKS 234
R E + SH S YS SR RS S+S S+ SRS S SKS S RS+S
Sbjct: 173 GRNIRLIEDKPRTSHRRS--YSGSRSRSRSRRRSRSRSRRSSRSRSRSISKSRSRSRSRS 230
Query: 235 SSVSRSRSRSRSS-SMTRSPPRV-------SKRKSK---SRSRSKRPPKSPEEEGQ 279
SRSRS+ R S S ++S P+ S+ +SK +SRS+ +SP+E G+
Sbjct: 231 KGRSRSRSKGRKSRSKSKSKPKSDRGSHSHSRSRSKDEYEKSRSRSRSRSPKENGK 286
Score = 91.3 bits (225), Expect = 9e-19
Identities = 92/267 (34%), Positives = 119/267 (44%), Gaps = 42/267 (15%)
Query: 8 PDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRD 67
P V L V+NL+ R S L+ + G V +E + + F D
Sbjct: 104 PPVRTEYRLIVENLSSRCSWQDLKDFMRQAGEVTYADAHKERTNEG-----VIEFRSYSD 158
Query: 68 AQDAEAAMDGAELDGRELRVQVARYGRRDLPRSRQGEPRGRSRGGGYGRRSRSYGRRSRS 127
+ A +DG E++GR +R+ + +PR R G RSRS RR
Sbjct: 159 MKRALDKLDGTEINGRNIRLI-------------EDKPRTSHRRSYSGSRSRSRSRRRSR 205
Query: 128 PRRRHRSRSRGPSCSRSRSRSRYRGSRYSRSPYSRSPYSRSRYSRSPYSRSRYRESRYGG 187
R R SRSR S S+SRSRSR R SRS S+ R SRS S+S+ + R G
Sbjct: 206 SRSRRSSRSRSRSISKSRSRSRSRSKGRSRS------RSKGRKSRSK-SKSKPKSDR--G 256
Query: 188 SHYSSSGYSNSRY------SRYHSSRSHSKSGSSTSSRSASTSKSSS---ARRSKSSSVS 238
SH S S Y SR S + + K + SRS S S+S+S SK+ SVS
Sbjct: 257 SHSHSRSRSKDEYEKSRSRSRSRSPKENGKGDIKSKSRSRSQSRSNSPLPVPPSKARSVS 316
Query: 239 ------RSRSRSRSSSMTRSPPRVSKR 259
SRSRSRS S +RS R S R
Sbjct: 317 PPPKRATSRSRSRSRSKSRSRSRSSSR 343
>gi|5730079 FUS interacting protein (serine-arginine rich) 1 isoform
1 [Homo sapiens]
Length = 183
Score = 92.4 bits (228), Expect = 4e-19
Identities = 67/181 (37%), Positives = 93/181 (51%), Gaps = 14/181 (7%)
Query: 15 TLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAA 74
+L V N+ T + LRR F +YG + DVY+P + +T+ PRGFA+V+F D RDA+DA
Sbjct: 11 SLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALHN 70
Query: 75 MDGAELDGRELRVQVARYGRRDLPRSRQGEPRGRSRGGGYGRRSRSYGRRSRSPRRRHRS 134
+D + GR++ +Q A+ G R P + + GR S R R R RS
Sbjct: 71 LDRKWICGRQIEIQFAQ-GDRKTPNQMKAKE---------GRNVYSSSRYDDYDRYR-RS 119
Query: 135 RSRGPSCSRSRSRSRYRGSRYSRSPYSRSPYSRSRYSRSPYSRSRYR---ESRYGGSHYS 191
RSR RSRSRS R S SP + P R R SRS R ++Y ++Y+
Sbjct: 120 RSRSYERRRSRSRSFDYNYRRSYSPRNSRPTGRPRRSRSHSDNDRPNCSWNTQYSSAYYT 179
Query: 192 S 192
S
Sbjct: 180 S 180
Score = 32.7 bits (73), Expect = 0.37
Identities = 29/89 (32%), Positives = 41/89 (46%), Gaps = 20/89 (22%)
Query: 182 ESRYGGSHYSSSGYSNSRYSRYHSSRSHSKSGSSTSSRSASTSKSSSARRSKSSSVSRSR 241
+++ G + YSSS Y + Y RY SRS +S RRS+S S +
Sbjct: 97 KAKEGRNVYSSSRYDD--YDRYRRSRS----------------RSYERRRSRSRSFDYNY 138
Query: 242 SRSRSSSMTRSPPRVSKRKSKSRSRSKRP 270
RS S +R P R+S+S S + RP
Sbjct: 139 RRSYSPRNSR--PTGRPRRSRSHSDNDRP 165
>gi|86991440 splicing factor, arginine/serine-rich 5 [Homo sapiens]
Length = 272
Score = 92.0 bits (227), Expect = 5e-19
Identities = 83/259 (32%), Positives = 117/259 (45%), Gaps = 21/259 (8%)
Query: 30 LRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQV 89
+ R F+ YGR+ D+ + R GF FV F D RDA DA +DG EL + ++
Sbjct: 20 VERFFKGYGRIRDIDLKR--------GFGFVEFEDPRDADDAVYELDGKELCSERVTIEH 71
Query: 90 ARYGRRDLPRSRQGEPRGRSRGGGYGRRSRSYGRRSRSPRRRHR----SRSRGPSCSRSR 145
AR RSR G RGR RR R+ R + R +R + S S +
Sbjct: 72 AR------ARSRGGRGRGRYSDRFSSRRPRNDRRNAPPVRTENRLIVENLSSRVSWQDLK 125
Query: 146 SRSRYRGSRYSRSPYSRSPYSRSRYSRSPYSRSRYRESRYGGSHYSSSGYSNSRYSRYHS 205
R G + + R + + Y + + G + S+ HS
Sbjct: 126 DFMRQAGE-VTFADAHRPKLNEGVVEFASYGDLKNAIEKLSGKEINGRKIKLIEGSKRHS 184
Query: 206 -SRSHSKSGSSTSSRSASTSKSSSARR-SKSSSVSRSRSRSRSSSMTRSPPRVSKRKSKS 263
SRS S+S + +SSRS S S+S S + S+S S SRSRSRS+S S++RSP +K S
Sbjct: 185 RSRSRSRSRTRSSSRSRSRSRSRSRKSYSRSRSRSRSRSRSKSRSVSRSPVPEKSQKRGS 244
Query: 264 RSRSKRPPKSPEEEGQMSS 282
SRSK P + + S
Sbjct: 245 SSRSKSPASVDRQRSRSRS 263
Score = 58.2 bits (139), Expect = 8e-09
Identities = 75/246 (30%), Positives = 95/246 (38%), Gaps = 81/246 (32%)
Query: 5 RPPPDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRV--GDVYIPREPHTKAPRGFAFVRF 62
R P V L V+NL+ R S L+ + G V D + P+ V F
Sbjct: 99 RNAPPVRTENRLIVENLSSRVSWQDLKDFMRQAGEVTFADAHRPKLNE-------GVVEF 151
Query: 63 HDRRDAQDAEAAMDGAELDGRELRVQVARYGRRDLPRSRQGEPRGRSRGGGYGRRSRSYG 122
D ++A + G E++GR++++ G R SRS
Sbjct: 152 ASYGDLKNAIEKLSGKEINGRKIKLIE-----------------------GSKRHSRS-- 186
Query: 123 RRSRSPRRRHRSRSRGPSCSRSRSRSRYRGSRYSRSPYSRSPYSRSRYSRSPYSRSRYRE 182
R RSRSR S SRSRSRSR R SR YSRSR SRSR R
Sbjct: 187 --------RSRSRSRTRSSSRSRSRSRSR---------SRKSYSRSR------SRSRSR- 222
Query: 183 SRYGGSHYSSSGYSNSRYSRYHSSRSHSKSGSSTSSRSASTSKSSSARRSKSSSVSRSRS 242
SRS S+S S + S + SS+R +SV R RS
Sbjct: 223 -----------------------SRSKSRSVSRSPVPEKSQKRGSSSRSKSPASVDRQRS 259
Query: 243 RSRSSS 248
RSRS S
Sbjct: 260 RSRSRS 265
>gi|86991438 splicing factor, arginine/serine-rich 5 [Homo sapiens]
Length = 272
Score = 92.0 bits (227), Expect = 5e-19
Identities = 83/259 (32%), Positives = 117/259 (45%), Gaps = 21/259 (8%)
Query: 30 LRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQV 89
+ R F+ YGR+ D+ + R GF FV F D RDA DA +DG EL + ++
Sbjct: 20 VERFFKGYGRIRDIDLKR--------GFGFVEFEDPRDADDAVYELDGKELCSERVTIEH 71
Query: 90 ARYGRRDLPRSRQGEPRGRSRGGGYGRRSRSYGRRSRSPRRRHR----SRSRGPSCSRSR 145
AR RSR G RGR RR R+ R + R +R + S S +
Sbjct: 72 AR------ARSRGGRGRGRYSDRFSSRRPRNDRRNAPPVRTENRLIVENLSSRVSWQDLK 125
Query: 146 SRSRYRGSRYSRSPYSRSPYSRSRYSRSPYSRSRYRESRYGGSHYSSSGYSNSRYSRYHS 205
R G + + R + + Y + + G + S+ HS
Sbjct: 126 DFMRQAGE-VTFADAHRPKLNEGVVEFASYGDLKNAIEKLSGKEINGRKIKLIEGSKRHS 184
Query: 206 -SRSHSKSGSSTSSRSASTSKSSSARR-SKSSSVSRSRSRSRSSSMTRSPPRVSKRKSKS 263
SRS S+S + +SSRS S S+S S + S+S S SRSRSRS+S S++RSP +K S
Sbjct: 185 RSRSRSRSRTRSSSRSRSRSRSRSRKSYSRSRSRSRSRSRSKSRSVSRSPVPEKSQKRGS 244
Query: 264 RSRSKRPPKSPEEEGQMSS 282
SRSK P + + S
Sbjct: 245 SSRSKSPASVDRQRSRSRS 263
Score = 58.2 bits (139), Expect = 8e-09
Identities = 75/246 (30%), Positives = 95/246 (38%), Gaps = 81/246 (32%)
Query: 5 RPPPDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRV--GDVYIPREPHTKAPRGFAFVRF 62
R P V L V+NL+ R S L+ + G V D + P+ V F
Sbjct: 99 RNAPPVRTENRLIVENLSSRVSWQDLKDFMRQAGEVTFADAHRPKLNE-------GVVEF 151
Query: 63 HDRRDAQDAEAAMDGAELDGRELRVQVARYGRRDLPRSRQGEPRGRSRGGGYGRRSRSYG 122
D ++A + G E++GR++++ G R SRS
Sbjct: 152 ASYGDLKNAIEKLSGKEINGRKIKLIE-----------------------GSKRHSRS-- 186
Query: 123 RRSRSPRRRHRSRSRGPSCSRSRSRSRYRGSRYSRSPYSRSPYSRSRYSRSPYSRSRYRE 182
R RSRSR S SRSRSRSR R SR YSRSR SRSR R
Sbjct: 187 --------RSRSRSRTRSSSRSRSRSRSR---------SRKSYSRSR------SRSRSR- 222
Query: 183 SRYGGSHYSSSGYSNSRYSRYHSSRSHSKSGSSTSSRSASTSKSSSARRSKSSSVSRSRS 242
SRS S+S S + S + SS+R +SV R RS
Sbjct: 223 -----------------------SRSKSRSVSRSPVPEKSQKRGSSSRSKSPASVDRQRS 259
Query: 243 RSRSSS 248
RSRS S
Sbjct: 260 RSRSRS 265
>gi|133922600 splicing factor, arginine/serine-rich 16 [Homo
sapiens]
Length = 674
Score = 91.3 bits (225), Expect = 9e-19
Identities = 73/175 (41%), Positives = 83/175 (47%), Gaps = 13/175 (7%)
Query: 100 SRQGEPRGRSRGGGYGRRSRSYGRRSRSPRRRHRSRSRGPSCSRSRSRSRYRGSRYSRSP 159
SR R SR RR Y R R R R RS SR S SR SRSR RG R+S
Sbjct: 387 SRTSSSRSSSRSSSRSRRGGGYYRSGRHARSRSRSWSRSRSRSRRYSRSRSRGRRHSGGG 446
Query: 160 YSRSPYSRSRYSRSPYSRSRYRESRYGGSHYSSSGYSNSRYSRYHSSRSHSKSGSSTSSR 219
SR + RYSRSP R Y R S +S RY R H S S SS
Sbjct: 447 -SRDGH---RYSRSPARRGGYGPRR----RSRSRSHSGDRYRRGGRGLRHHSSSRSRSSW 498
Query: 220 SASTSKSSSARRSKSSSVSRSRSRSRSSSMTRSPPRVSKRKSKSRSRSKRPPKSP 274
S S S+S S RS+S S S S+SRSRS S ++SP S +R + RP SP
Sbjct: 499 SLSPSRSRSLTRSRSHSPSPSQSRSRSRSRSQSP-----SPSPAREKLTRPAASP 548
Score = 79.3 bits (194), Expect = 3e-15
Identities = 78/198 (39%), Positives = 93/198 (46%), Gaps = 25/198 (12%)
Query: 93 GRRDLPRSRQGEPRGRSRGGGYGRRSRSYGRRSRSPRRRHRSRSRGPSCSRSR-SRSRYR 151
G+ P G GR+ RR S S S R SRS S SRSR YR
Sbjct: 354 GKPPAPPQPGGPAPGRNASA---RRRSSSSSSSSSASRTSSSRSSSRSSSRSRRGGGYYR 410
Query: 152 GSRYSRSPYSRSPYSRSRYSRSPYSRSRYRESRYGGSHYSSSGYSNSRYSRYHS------ 205
R++RS SRS +SRSR YSRSR R R+ G S G+ RYSR +
Sbjct: 411 SGRHARSR-SRS-WSRSRSRSRRYSRSRSRGRRHSGGG-SRDGH---RYSRSPARRGGYG 464
Query: 206 ------SRSHSKSGSSTSSRSASTSKSSSARRSKSSSVSRSRSRSRSSSMTRSPPRVSKR 259
SRSHS R SS +R S S S SRSRS +RS S + SP S+
Sbjct: 465 PRRRSRSRSHSGDRYRRGGRGLRHHSSSRSRSSWSLSPSRSRSLTRSRSHSPSP---SQS 521
Query: 260 KSKSRSRSKRPPKSPEEE 277
+S+SRSRS+ P SP E
Sbjct: 522 RSRSRSRSQSPSPSPARE 539
Score = 55.5 bits (132), Expect = 5e-08
Identities = 69/226 (30%), Positives = 92/226 (40%), Gaps = 16/226 (7%)
Query: 65 RRDAQDAEAAMDGAELDGRELRVQVARYGRRDLPRSRQGEPRGRSRGG-GYGRR-SRSYG 122
R+D ++AEA L+ E + R RR R+ RGR Y RR S +Y
Sbjct: 240 RKDKEEAEAIKHAKALE-EEKAMYSGRRSRRQRREFREKRLRGRKISPPSYARRDSPTYD 298
Query: 123 RRSRSPRR---RHRSRSRGPSCSRSRSRS---RYRGS----RYSRSPYSRSPYSRSRYSR 172
RSP RSRSR P+ R + + GS + + + S + +
Sbjct: 299 PYKRSPSESSSESRSRSRSPTPGREEKITFITSFGGSDEEAAAAAAAAAASGVTTGKPPA 358
Query: 173 SPYSRSRYRESRYGGSHYSSSGYSNSRYSRYHSSRSHSKSGSSTSSRSASTSKSSSARRS 232
P SSS S+S SR SSRS S+S SS S R +S R +
Sbjct: 359 PPQPGGPAPGRNASARRRSSSSSSSSSASRTSSSRSSSRS-SSRSRRGGGYYRSG--RHA 415
Query: 233 KSSSVSRSRSRSRSSSMTRSPPRVSKRKSKSRSRSKRPPKSPEEEG 278
+S S S SRSRSRS +RS R + R +SP G
Sbjct: 416 RSRSRSWSRSRSRSRRYSRSRSRGRRHSGGGSRDGHRYSRSPARRG 461
Score = 53.9 bits (128), Expect = 2e-07
Identities = 86/315 (27%), Positives = 118/315 (37%), Gaps = 63/315 (20%)
Query: 24 RTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAEL--- 80
R S D +++ EK +G Y E T A A + + A + E+ D E+
Sbjct: 147 RPSEDEKKKLAEKKASIGYTY---EDSTVAEVEKAAEKPEEEESAAEEESNSDEDEVIPD 203
Query: 81 -------------DGRELRVQVARYGRRD-----LPRSRQGEPRGRSRGGGYGRRSRSY- 121
+L Q YG D + R + E Y
Sbjct: 204 IDVEVDVDELNQEQVADLNKQATTYGMADGDFVRMLRKDKEEAEAIKHAKALEEEKAMYS 263
Query: 122 GRRSRSPRR-----RHRSRSRGPSCSRSRSRSRYRGSRYSRSPYSRSPYSRSRYSRSPYS 176
GRRSR RR R R R P R Y Y RSP S SRSR SRSP
Sbjct: 264 GRRSRRQRREFREKRLRGRKISPPSYARRDSPTY--DPYKRSPSESSSESRSR-SRSPTP 320
Query: 177 RSRYRES---RYGGSHY---------SSSGYSNSRYSR--YHSSRSHSKSGSSTSSRSAS 222
+ + +GGS ++SG + + + ++ S+ S+S
Sbjct: 321 GREEKITFITSFGGSDEEAAAAAAAAAASGVTTGKPPAPPQPGGPAPGRNASARRRSSSS 380
Query: 223 TSKSSSARRSKSSSVSRSRS---------------RSRSSSMTRSPPRVSKRKSKSRSRS 267
+S SS++R S S S SRS S RSRS S +RS R S+R S+SRSR
Sbjct: 381 SSSSSASRTSSSRSSSRSSSRSRRGGGYYRSGRHARSRSRSWSRSRSR-SRRYSRSRSRG 439
Query: 268 KRPPKSPEEEGQMSS 282
+R +G S
Sbjct: 440 RRHSGGGSRDGHRYS 454
Score = 44.7 bits (104), Expect = 9e-05
Identities = 59/229 (25%), Positives = 77/229 (33%), Gaps = 38/229 (16%)
Query: 77 GAELDGRELRVQVARYG-----RRDLPRSRQGEPRGRSRGGGYGRR----SRSYGRRSRS 127
G DG AR G RR RS G+ R R GG G R SRS S S
Sbjct: 445 GGSRDGHRYSRSPARRGGYGPRRRSRSRSHSGD---RYRRGGRGLRHHSSSRSRSSWSLS 501
Query: 128 PRRRH---RSRSRGPSCSRSRSRSRYRGSRYSRSPY-------SRSPYSRSRYSRS---- 173
P R RSRS PS S+SRSRSR R S SP + SP + ++
Sbjct: 502 PSRSRSLTRSRSHSPSPSQSRSRSRSRSQSPSPSPAREKLTRPAASPAVGEKLKKTEPAA 561
Query: 174 ------------PYSRSRYRESRYGGSHYSSSGYSNSRYSRYHSSRSHSKSGSSTSSRSA 221
P + + R + + + + + +
Sbjct: 562 GKETGAAKPKLTPQEKLKLRMQKALNRQFKADKKAAQEKMIQQEHERQEREDELRAMARK 621
Query: 222 STSKSSSARRSKSSSVSRSRSRSRSSSMTRSPPRVSKRKSKSRSRSKRP 270
K R + R SR S R S + +SRSRS+ P
Sbjct: 622 IRMKERERREKEREEWERQYSRQSRSPSPRYSREYSSSRRRSRSRSRSP 670
Score = 30.8 bits (68), Expect = 1.4
Identities = 24/65 (36%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
Query: 99 RSRQGEPRGRSRGGGYGRRSRSYGRRSRSPRRRHR-SRSRGPSCSRSRSRSRYRGSRYSR 157
+ R+ E R +R R R R R+ R SRS P SR S SR R SR
Sbjct: 609 QEREDELRAMARKIRMKERERREKEREEWERQYSRQSRSPSPRYSREYSSSRRRSRSRSR 668
Query: 158 SPYSR 162
SP+ R
Sbjct: 669 SPHYR 673
Score = 30.0 bits (66), Expect = 2.4
Identities = 22/59 (37%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Query: 119 RSYGRRSRSPRRRHRSRSRGPSCSRSRSRSRYRGSRYSRSPYSRSPYSRSRYSRSPYSR 177
R+ R+ R R R + R + +SR RYSR S SRSR SRSP+ R
Sbjct: 616 RAMARKIRMKERERREKEREEWERQYSRQSRSPSPRYSREYSSSRRRSRSR-SRSPHYR 673
>gi|169161980 PREDICTED: similar to FUS interacting protein
(serine-arginine rich) 1, partial [Homo sapiens]
Length = 181
Score = 90.5 bits (223), Expect = 1e-18
Identities = 68/181 (37%), Positives = 94/181 (51%), Gaps = 15/181 (8%)
Query: 15 TLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAA 74
+L V N+ T + LRR F +YG + DVY+P + +T+ PRGFA+V+F D RDA+DA
Sbjct: 11 SLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALHN 70
Query: 75 MDGAELDGRELRVQVARYGRRDLPRSRQGEPRGRSRGGGYGRRSRSYGRRSRSPRRRHRS 134
+D + GR++ +Q A+ G R P + + GR S R R R RS
Sbjct: 71 LDRKWICGRQIEIQFAQ-GDRKTPNQMKAKE---------GRNVYSSSRYDDYDRYR-RS 119
Query: 135 RSRGPSCSRSRSRSRYRGSRYSRSPYSRSPYSRSRYSRSPYSRSRYR---ESRYGGSHYS 191
RSR RSRSRS R S SP +R P R R SRS R ++Y ++Y+
Sbjct: 120 RSRSYERRRSRSRSFDYNYRRSYSPRNR-PTGRPRRSRSHSDNDRPNCSWNTQYSSAYYT 178
Query: 192 S 192
S
Sbjct: 179 S 179
Score = 32.7 bits (73), Expect = 0.37
Identities = 29/89 (32%), Positives = 41/89 (46%), Gaps = 21/89 (23%)
Query: 182 ESRYGGSHYSSSGYSNSRYSRYHSSRSHSKSGSSTSSRSASTSKSSSARRSKSSSVSRSR 241
+++ G + YSSS Y + Y RY SR S+S RRS+S S +
Sbjct: 97 KAKEGRNVYSSSRYDD--YDRYRRSR----------------SRSYERRRSRSRSFDYNY 138
Query: 242 SRSRSSSMTRSPPRVSKRKSKSRSRSKRP 270
RS S R+ P R+S+S S + RP
Sbjct: 139 RRSYS---PRNRPTGRPRRSRSHSDNDRP 164
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 89.0 bits (219), Expect = 4e-18
Identities = 83/197 (42%), Positives = 102/197 (51%), Gaps = 16/197 (8%)
Query: 82 GRELRVQVARYGRRDLPRSRQGEPRGRSRGGG-YGRRSRSYGR--RSRSPRRRHRSRS-R 137
GR A+ GR RSR RG SR RRSRS R RSRSP+RR RSRS +
Sbjct: 482 GRSRSPATAKRGRS---RSRTPTKRGHSRSRSPQWRRSRSAQRWGRSRSPQRRGRSRSPQ 538
Query: 138 GPSCSRSRS---RSRYRGSRYSRSPYSRSPYSRSR-YSRSPYSRSRYRESRYGGSHYSSS 193
P SRSR+ R R R +R RS +SRSP +R R SR+P R R R SR S S
Sbjct: 539 RPGWSRSRNTQRRGRSRSARRGRS-HSRSPATRGRSRSRTPARRGRSR-SRTPARRRSRS 596
Query: 194 GYSNSRYSRYHSSRSHSKSGSSTSSRSASTSKSSSARRSKSSSVSRSRSRSRSSSMT--- 250
R SR + +S S T +R S ++S RRS+S S +R RSRS +
Sbjct: 597 RTPTRRRSRSRTPARRGRSRSRTPARRRSRTRSPVRRRSRSRSPARRSGRSRSRTPARRG 656
Query: 251 RSPPRVSKRKSKSRSRS 267
RS R R+ +SRSR+
Sbjct: 657 RSRSRTPARRGRSRSRT 673
Score = 89.0 bits (219), Expect = 4e-18
Identities = 86/242 (35%), Positives = 110/242 (45%), Gaps = 59/242 (24%)
Query: 90 ARYGRRDLPRSRQGEPRGRSRGGGYGRRSRSYGR-----------------RSRSPRRRH 132
+R RR SR RGRSR RR RS R RSR+P RR
Sbjct: 554 SRSARRGRSHSRSPATRGRSRSRTPARRGRSRSRTPARRRSRSRTPTRRRSRSRTPARRG 613
Query: 133 RSRSRGPSCSRSRSRSRYRGSRYSRSPYSRSPYSRSRY--------SRSPYSRSRYRE-- 182
RSRSR P+ RSR+RS R SRSP RS SRSR SR+P R R R
Sbjct: 614 RSRSRTPARRRSRTRSPVRRRSRSRSPARRSGRSRSRTPARRGRSRSRTPARRGRSRSRT 673
Query: 183 -SRYGGSHYSSS----GYSNSRYSRYHSSRSHS----------------KSGSSTSSRSA 221
+R G S + G S SR R SRS S +SGSS+ ++
Sbjct: 674 PARRSGRSRSRTPARRGRSRSRTPRRGRSRSRSLVRRGRSHSRTPQRRGRSGSSSERKNK 733
Query: 222 S-----TSKSSSARRSKSSSVSRSRSRSRSSSMTRSPPRVSKRKSKS------RSRSKRP 270
S S+S+S+ K S +S RSRS SS +++ R+S R+S S + +S+ P
Sbjct: 734 SRTSQRRSRSNSSPEMKKSRISSRRSRSLSSPRSKAKSRLSLRRSLSGSSPCPKQKSQTP 793
Query: 271 PK 272
P+
Sbjct: 794 PR 795
Score = 88.6 bits (218), Expect = 6e-18
Identities = 76/195 (38%), Positives = 98/195 (50%), Gaps = 24/195 (12%)
Query: 99 RSRQGEPRGRSRGGGYGRRSRSYGR--------RSRSPRRRHRSRSRGPSCSRSRSRSRY 150
RSR + RGRSR RR RS+ R RSR+P RR RSRSR P+ RSRSR+
Sbjct: 544 RSRNTQRRGRSRSA---RRGRSHSRSPATRGRSRSRTPARRGRSRSRTPARRRSRSRTPT 600
Query: 151 RGSRYSRSPY------SRSPYSRSRYSRSPY---SRSRYRESRYGGSHYSSSGYSNSRYS 201
R SR+P SR+P R +RSP SRSR R G S + S
Sbjct: 601 RRRSRSRTPARRGRSRSRTPARRRSRTRSPVRRRSRSRSPARRSGRSRSRTPARRGRSRS 660
Query: 202 RYHSSRSHSKSGSSTSSRSASTSKSSSARRSKSSSVSRSRSRSRSSSMT---RSPPRVSK 258
R + R S+S + + RS + + ARR +S S + R RSRS S+ RS R +
Sbjct: 661 RTPARRGRSRS-RTPARRSGRSRSRTPARRGRSRSRTPRRGRSRSRSLVRRGRSHSRTPQ 719
Query: 259 RKSKSRSRSKRPPKS 273
R+ +S S S+R KS
Sbjct: 720 RRGRSGSSSERKNKS 734
Score = 88.6 bits (218), Expect = 6e-18
Identities = 82/228 (35%), Positives = 101/228 (44%), Gaps = 39/228 (17%)
Query: 47 REPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVARYGRRDLPRSRQGEPR 106
R P K PRG R RR+ D + R RR RSR R
Sbjct: 1761 RSPSPK-PRGLQRSRSRSRREKTRTTRRRDRSGSSQSTSR-------RRQRSRSRSRVTR 1812
Query: 107 GRSRGGGYGRRSRSYGRRSRSPRRRHRSRSRGPSCSRSRSRSRYRGSRYSRSPYSRSPYS 166
R G GY RS + SR+ RR R RSR P SR RSR SR S +P+ R S
Sbjct: 1813 RRRGGSGYHSRSPARQESSRTSSRRRRGRSRTPPTSRKRSR-----SRTSPAPWKR---S 1864
Query: 167 RSRYSRSPYSRSRYRESRYGGSHYSSSGYSNSRYSRYHSSRSHSKSGSSTSSRSASTSKS 226
RSR S + + RSR R SR S+S +S SR S S++
Sbjct: 1865 RSRASPATHRRSRSRTPLI--------------------SRRRSRSRTSPVSRRRSRSRT 1904
Query: 227 SSAR---RSKSSSVSRSRSRSRSSSMTRSPPRVSKRKSKSRSRSKRPP 271
S R RS++S VSR RSRSR+ +TR R ++ RSRS+ PP
Sbjct: 1905 SVTRRRSRSRASPVSRRRSRSRTPPVTRRRSRSRTPTTRRRSRSRTPP 1952
Score = 87.0 bits (214), Expect = 2e-17
Identities = 79/209 (37%), Positives = 105/209 (50%), Gaps = 30/209 (14%)
Query: 92 YGRRDLPRSRQGEPR---GRSRGGGYGRRSRSYGRRSRSPRRRHRSRSRGPSCSRSRSRS 148
+GR +S P GRSR +R RS RSR+P +R SRSR P RSRS
Sbjct: 464 HGRAKRDKSHSHTPSRRMGRSRSPATAKRGRS---RSRTPTKRGHSRSRSPQWRRSRSAQ 520
Query: 149 RYRGSRY------SRSPYSRSPYSRSRYSRSPYSRSRYRESRYGGSHYSSSGYSNSRYSR 202
R+ SR SRSP R +SRSR ++ R R R +R G SH S SR
Sbjct: 521 RWGRSRSPQRRGRSRSP-QRPGWSRSRNTQR---RGRSRSARRGRSHSRSPATRGRSRSR 576
Query: 203 YHSSRSHSKSGSSTSSRSASTSKSSSARRSKSSSV-----SRSRSRSRSSSMTRSPPRVS 257
+ R S+S T +R S S++ + RRS+S + SRSR+ +R S TRSP R
Sbjct: 577 TPARRGRSRS--RTPARRRSRSRTPTRRRSRSRTPARRGRSRSRTPARRRSRTRSPVR-- 632
Query: 258 KRKSKSRSRSKRPPKS----PEEEGQMSS 282
R+S+SRS ++R +S P G+ S
Sbjct: 633 -RRSRSRSPARRSGRSRSRTPARRGRSRS 660
Score = 87.0 bits (214), Expect = 2e-17
Identities = 84/209 (40%), Positives = 99/209 (47%), Gaps = 21/209 (10%)
Query: 78 AELDGRELRVQVARYGRRDLPRSRQGEPRGRSRGGGYGRRSRSYGR-RSRSPRRRHRSRS 136
A GR AR GR RSR RGRSR RRS GR RSR+P RR RSRS
Sbjct: 641 ARRSGRSRSRTPARRGRS---RSRTPARRGRSRSRTPARRS---GRSRSRTPARRGRSRS 694
Query: 137 RGPSCSRSRSRSRY-RGSRYSRSPYSRSPYSRSRYSRSPYSRSRYRESRYGGSHYSSSGY 195
R P RSRSRS RG +SR+P R S S R SR+ R SR S
Sbjct: 695 RTPRRGRSRSRSLVRRGRSHSRTPQRRG-RSGSSSERKNKSRTSQRRSRSNSSPEMKKSR 753
Query: 196 SNSRYSRYHSS-RSHSK---------SGSSTSSRSASTSKSSSARRSKSSSVSRSRSRSR 245
+SR SR SS RS +K SGSS + S + +R S ++SR+ R
Sbjct: 754 ISSRRSRSLSSPRSKAKSRLSLRRSLSGSSPCPKQKSQTPPRRSRSGSSQPKAKSRTPPR 813
Query: 246 SSSMTRSPPRVSKRKSKSRSRSKRPPKSP 274
S + SPP K+KSK+ SR SP
Sbjct: 814 RSRSSSSPP--PKQKSKTPSRQSHSSSSP 840
Score = 79.7 bits (195), Expect = 3e-15
Identities = 83/231 (35%), Positives = 105/231 (45%), Gaps = 51/231 (22%)
Query: 90 ARYGRRDLPRSRQGEPRGRSRGGGYGRRSRSYG-----RRSRSPRRRHRS---------- 134
AR RR RS P RSR RRS S +SRS RRR +
Sbjct: 1701 ARLSRRS--RSASSSPETRSRTPPRHRRSPSVSSPEPAEKSRSSRRRRSASSPRTKTTSR 1758
Query: 135 RSRGPS-----CSRSRSRSRYRGSRYSRS-PYSRSPYSRSRYSRSPYSRSRYRESRYGGS 188
R R PS RSRSRSR +R +R S S S SR + SRSR R GGS
Sbjct: 1759 RGRSPSPKPRGLQRSRSRSRREKTRTTRRRDRSGSSQSTSRRRQRSRSRSRVTRRRRGGS 1818
Query: 189 HYSSSGYSNSRYSRYHSSRSHSKSGSSTSSRSASTSKSSSA--------------RRSKS 234
Y S + SR S R +S + +SR S S++S A RRS+S
Sbjct: 1819 GYHSRSPARQESSRTSSRRRRGRSRTPPTSRKRSRSRTSPAPWKRSRSRASPATHRRSRS 1878
Query: 235 SS--VSRSRSRSRSSSMTRSPPR----VSKRKSKS--------RSRSKRPP 271
+ +SR RSRSR+S ++R R V++R+S+S RSRS+ PP
Sbjct: 1879 RTPLISRRRSRSRTSPVSRRRSRSRTSVTRRRSRSRASPVSRRRSRSRTPP 1929
Score = 79.3 bits (194), Expect = 3e-15
Identities = 74/187 (39%), Positives = 96/187 (51%), Gaps = 20/187 (10%)
Query: 99 RSRQGEPR---GRSRGGGYGRRSRSYGRRSRSPRRRHRSRSRGPSCSRSRSRSRY---RG 152
RSR P GRSR RR RS RSR+P RR RSRSR P+ RSRSR RG
Sbjct: 634 RSRSRSPARRSGRSRSRTPARRGRS---RSRTPARRGRSRSRTPARRSGRSRSRTPARRG 690
Query: 153 SRYSRSPYSRSPYSRSRYSRS-PYSRSRYRESRYGGSHYSSSGYSNSRYSRYHSSRSHSK 211
SR+P SRS R +SR+ R R G SSS N + SRS+S
Sbjct: 691 RSRSRTPRRGRSRSRSLVRRGRSHSRTPQRRGRSG----SSSERKNKSRTSQRRSRSNSS 746
Query: 212 SGSSTSSRSASTSKSSSARRSKSSS-VSRSRSRSRSS----SMTRSPPRVSKR-KSKSRS 265
S S+ S+S S+ RSK+ S +S RS S SS +++PPR S+ S+ ++
Sbjct: 747 PEMKKSRISSRRSRSLSSPRSKAKSRLSLRRSLSGSSPCPKQKSQTPPRRSRSGSSQPKA 806
Query: 266 RSKRPPK 272
+S+ PP+
Sbjct: 807 KSRTPPR 813
Score = 79.0 bits (193), Expect = 4e-15
Identities = 77/207 (37%), Positives = 92/207 (44%), Gaps = 25/207 (12%)
Query: 94 RRDLPRSRQGEPRGRSRGGGYGRRSRSYGR---------RSRSPRRRHRSRSRGPSCSRS 144
RR R+ R RSR RR RS R RSR+P R RSRSR P +R
Sbjct: 1898 RRSRSRTSVTRRRSRSRASPVSRR-RSRSRTPPVTRRRSRSRTPTTRRRSRSRTPPVTRR 1956
Query: 145 RSRSRYRGSRYSRSPYSRSPYSRSRYSRSPYSRSRYRESRYGGSHYSSSGYSNSRYSRYH 204
RSRSR RS SP +R R SRS S R SR S + S SR S
Sbjct: 1957 RSRSRTPPVTRRRSRSRTSPITRRR-SRSRTSPVTRRRSRSRTSPVTRRR-SRSRTSPVT 2014
Query: 205 SSRSHSKSGSSTSSRSASTSKSSSARRSKSSSVSRSRSRSRS---------SSMTRSPPR 255
RS S++ + RS S + +RS+S S R RSRS S+TRSPP
Sbjct: 2015 RRRSRSRTPPAIRRRSRSRTPLLPRKRSRSRSPLAIRRRSRSRTPRTARGKRSLTRSPPA 2074
Query: 256 VSKR----KSKSRSRSKRPPKSPEEEG 278
+ +R S RSRS PP + G
Sbjct: 2075 IRRRSASGSSSDRSRSATPPATRNHSG 2101
Score = 72.0 bits (175), Expect = 5e-13
Identities = 66/181 (36%), Positives = 86/181 (47%), Gaps = 15/181 (8%)
Query: 98 PRSRQGEPRGRSRGGGYGRRSRSYGRRSRS----PRRRHRSRSRGP-SCSRSRSRSR--- 149
P G R S RS +R +S P RR RSR P + R RSRSR
Sbjct: 443 PAPAPGSHREISSSPTSKNRSHGRAKRDKSHSHTPSRR-MGRSRSPATAKRGRSRSRTPT 501
Query: 150 YRGSRYSRSPYSRSPYSRSRY--SRSPYSRSRYRESRYGGSHYSSSGYSNSRYSRYHSSR 207
RG SRSP R S R+ SRSP R R R + G S + R R
Sbjct: 502 KRGHSRSRSPQWRRSRSAQRWGRSRSPQRRGRSRSPQRPGWSRSRNTQRRGRSRSARRGR 561
Query: 208 SHSKSGSSTSSRSASTSKSSSAR-RSKSSSVSRSRSRSRSSSMTRSPPRVSKRKSKSRSR 266
SHS+ S ++R S S++ + R RS+S + +R RSRSR+ + RS R R+ +SRSR
Sbjct: 562 SHSR---SPATRGRSRSRTPARRGRSRSRTPARRRSRSRTPTRRRSRSRTPARRGRSRSR 618
Query: 267 S 267
+
Sbjct: 619 T 619
Score = 70.5 bits (171), Expect = 2e-12
Identities = 74/196 (37%), Positives = 94/196 (47%), Gaps = 24/196 (12%)
Query: 91 RYGRRDLPRSRQGEPRGRSRGGGYGRRSRSYG-----RRSRSPR---RRHRSRSRGPSCS 142
R GR P + + R R+ + +RSRS RRSRS R RSRSR S
Sbjct: 1838 RRGRSRTPPTSRKRSRSRTSPAPW-KRSRSRASPATHRRSRSRTPLISRRRSRSRTSPVS 1896
Query: 143 RSRSRSR----YRGSRYSRSPYSRSPYSRSRYSRSPYSRSRYRESRYGGSHYSSSGYSNS 198
R RSRSR R SR SP SR RSR P +R R R ++ S S
Sbjct: 1897 RRRSRSRTSVTRRRSRSRASPVSR---RRSRSRTPPVTRRRSRSRT-----PTTRRRSRS 1948
Query: 199 RYSRYHSSRSHSKSGSSTSSRSASTSKSSSARRSKS--SSVSRSRSRSRSSSMTRSPPRV 256
R RS S++ T RS S + + RRS+S S V+R RSRSR+S +TR R
Sbjct: 1949 RTPPVTRRRSRSRTPPVTRRRSRSRTSPITRRRSRSRTSPVTRRRSRSRTSPVTRRRSRS 2008
Query: 257 -SKRKSKSRSRSKRPP 271
+ ++ RSRS+ PP
Sbjct: 2009 RTSPVTRRRSRSRTPP 2024
Score = 69.7 bits (169), Expect = 3e-12
Identities = 65/177 (36%), Positives = 89/177 (50%), Gaps = 21/177 (11%)
Query: 99 RSRQGEPRGRSRGGGYGRRSRSYGRRSRSPRRRHRSRSRGPSCS-RSRSRSRY---RGSR 154
R P ++R G +R +S+ S +P RR RSR P+ + R RSRSR RG
Sbjct: 451 REISSSPTSKNRSHGRAKRDKSH---SHTPSRR-MGRSRSPATAKRGRSRSRTPTKRGHS 506
Query: 155 YSRSPYSRSPYSRSRY--SRSPYSRSRYRESRYGGSHYSSSGYSNSRYSRYHSSRSHSKS 212
SRSP R S R+ SRSP R R R + G S + R RSHS+S
Sbjct: 507 RSRSPQWRRSRSAQRWGRSRSPQRRGRSRSPQRPGWSRSRNTQRRGRSRSARRGRSHSRS 566
Query: 213 GSSTSSRSASTSKSSSARRSKSSSVSRSRSRSRSSSMTRSPPRVSKRKSKSRSRSKR 269
+T RS S + ARR +S RSR+ +R S +R+P R R+S+SR+ ++R
Sbjct: 567 -PATRGRSRSRTP---ARRGRS----RSRTPARRRSRSRTPTR---RRSRSRTPARR 612
Score = 62.8 bits (151), Expect = 3e-10
Identities = 66/204 (32%), Positives = 86/204 (42%), Gaps = 21/204 (10%)
Query: 88 QVARYGRRDLPRSRQGEPRGRSRGGGYGRRSRSYGRRSRSPRRRHRSRSRGPSC-SRSRS 146
+ AR G R P EP+ +SR R SRS +R R RSRS S +RSR+
Sbjct: 1666 RTARRGSRSSP-----EPKTKSRTPPRRRSSRSSPELTRKARLSRRSRSASSSPETRSRT 1720
Query: 147 RSRYRGSRYSRSPYSRSPYSRSRYSRSPYSRSRYRESRYGGSHYSSS-----GYSNSRYS 201
R+R S SP SR RS S SR G S S SR
Sbjct: 1721 PPRHRRSPSVSSPEPAEKSRSSRRRRSASSPRTKTTSRRGRSPSPKPRGLQRSRSRSRRE 1780
Query: 202 RYHSSRSHSKSGSSTSSRSASTSKSSSARRSKSSSVSRSRSRSRSSSMTRSPPRVSKRKS 261
+ ++R +SGSS S+ S +RS+S S R R S +RSP R ++
Sbjct: 1781 KTRTTRRRDRSGSSQST-------SRRRQRSRSRSRVTRRRRGGSGYHSRSPARQESSRT 1833
Query: 262 KS---RSRSKRPPKSPEEEGQMSS 282
S R RS+ PP S + +S
Sbjct: 1834 SSRRRRGRSRTPPTSRKRSRSRTS 1857
Score = 60.1 bits (144), Expect = 2e-09
Identities = 67/206 (32%), Positives = 92/206 (44%), Gaps = 32/206 (15%)
Query: 99 RSRQ-GEPRGRSRGGGYGRRSRSYG-----RRSRSPRRRHRSRSRGPSCSRSRSRSRYRG 152
RSR PR +++ RRS S ++S++P RR RS S P +++SR+ R
Sbjct: 758 RSRSLSSPRSKAKSRLSLRRSLSGSSPCPKQKSQTPPRRSRSGSSQP---KAKSRTPPRR 814
Query: 153 SRYSRSP----YSRSPYSRSRYSRSPYSRSRYRESRYGGSHYSSSGYSNS----RYSRYH 204
SR S SP S++P +S S SP+ + + GS S S R S +
Sbjct: 815 SRSSSSPPPKQKSKTPSRQSHSSSSPHPKVKSGTPPRQGSITSPQANEQSVTPQRRSCFE 874
Query: 205 SSRS----------HSKSGSSTSSRSASTSKSSSARRSKS-----SSVSRSRSRSRSSSM 249
SS HS SGSS +ST S RS S ++ R RS S S
Sbjct: 875 SSPDPELKSRTPSRHSCSGSSPPRVKSSTPPRQSPSRSSSPQPKVKAIISPRQRSHSGSS 934
Query: 250 TRSPPRVSKRKSKSRSRSKRPPKSPE 275
+ SP RV+ R + RSRS P + E
Sbjct: 935 SPSPSRVTSRTTPRRSRSVSPCSNVE 960
Score = 55.5 bits (132), Expect = 5e-08
Identities = 60/183 (32%), Positives = 81/183 (44%), Gaps = 36/183 (19%)
Query: 119 RSYGRRSRSPRRRHRSRSRGPSCSRS-----------RSRSRYRGSRYSRSPY--SRSPY 165
R+ RRSRS S+ RGPS S +SR+ RGSR S P SR+P
Sbjct: 1630 RALPRRSRSGSS---SKGRGPSPEGSSSTESSPEHPPKSRTARRGSRSSPEPKTKSRTPP 1686
Query: 166 SRSRYSRSPYSRSRYRESRYGGSHYSSSGYSNSRYSRYHSSRSHSKSGSSTSSRSASTSK 225
R SP + R SR S SS + R+ S S S + SRS+ +
Sbjct: 1687 RRRSSRSSPELTRKARLSRRSRSASSSPETRSRTPPRHRRSPSVSSPEPAEKSRSSRRRR 1746
Query: 226 SSSARRSKSSSV--------------SRSRSRSRSSSMTR------SPPRVSKRKSKSRS 265
S+S+ R+K++S SRSRSR + TR S S+R+ +SRS
Sbjct: 1747 SASSPRTKTTSRRGRSPSPKPRGLQRSRSRSRREKTRTTRRRDRSGSSQSTSRRRQRSRS 1806
Query: 266 RSK 268
RS+
Sbjct: 1807 RSR 1809
Score = 52.4 bits (124), Expect = 4e-07
Identities = 49/143 (34%), Positives = 60/143 (41%), Gaps = 7/143 (4%)
Query: 106 RGRSRGGGYGRRSRSYGRRSRSPRRRHRSRSRGPSCSRSRSRSRY----RGSRYSRSPYS 161
R RSR RR R SP R RSRSR P R RSRSR R SRSP +
Sbjct: 1993 RSRSRTSPVTRRR---SRSRTSPVTRRRSRSRTPPAIRRRSRSRTPLLPRKRSRSRSPLA 2049
Query: 162 RSPYSRSRYSRSPYSRSRYRESRYGGSHYSSSGYSNSRYSRYHSSRSHSKSGSSTSSRSA 221
SRSR R+ + S S+SG S+ R + + SGS T +
Sbjct: 2050 IRRRSRSRTPRTARGKRSLTRSPPAIRRRSASGSSSDRSRSATPPATRNHSGSRTPPVAL 2109
Query: 222 STSKSSSARRSKSSSVSRSRSRS 244
++S+ S R S R RS
Sbjct: 2110 NSSRMSCFSRPSMSPTPLDRCRS 2132
Score = 51.6 bits (122), Expect = 8e-07
Identities = 58/183 (31%), Positives = 70/183 (38%), Gaps = 7/183 (3%)
Query: 97 LPRSRQGEP---RGRSRGGGYGRRSRSYGRRSRSPRRRHRSRSRGPSCSRSRSRSRYRGS 153
+P S GEP G + + RRS S S S S S S S S GS
Sbjct: 2501 VPHSDVGEPPASTGAQQPSALAALQPAKERRSSSSSSSSSSSSSSSSSSSSSSSSS--GS 2558
Query: 154 RYSRSPYSRSPYSRS-RYSRSPYSRSRYRES-RYGGSHYSSSGYSNSRYSRYHSSRSHSK 211
S S S P R P +E+ R G + R S SS S S
Sbjct: 2559 SSSDSEGSSLPVQPEVALKRVPSPTPAPKEAVREGRPPEPTPAKRKRRSSSSSSSSSSSS 2618
Query: 212 SGSSTSSRSASTSKSSSARRSKSSSVSRSRSRSRSSSMTRSPPRVSKRKSKSRSRSKRPP 271
S SS+SS S+S+S SSS+ S SSS S S P S +K R R P
Sbjct: 2619 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSPSPAKPGPQALPKPASPKKPPPGERRSRSP 2678
Query: 272 KSP 274
+ P
Sbjct: 2679 RKP 2681
Score = 50.8 bits (120), Expect = 1e-06
Identities = 49/155 (31%), Positives = 65/155 (41%), Gaps = 3/155 (1%)
Query: 128 PRRRHRSRSRGPSCSRSRSRSRYRGSRYSRSPYSRSPYSRSRYSRSPYSRSRYRESRYGG 187
P + RS S S S S S S S S S S S S S S P +
Sbjct: 2526 PAKERRSSSSSSSSSSSSSSS---SSSSSSSSSSGSSSSDSEGSSLPVQPEVALKRVPSP 2582
Query: 188 SHYSSSGYSNSRYSRYHSSRSHSKSGSSTSSRSASTSKSSSARRSKSSSVSRSRSRSRSS 247
+ R ++ +S SS+SS S+S+S SSS+ S SSS S S S S SS
Sbjct: 2583 TPAPKEAVREGRPPEPTPAKRKRRSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2642
Query: 248 SMTRSPPRVSKRKSKSRSRSKRPPKSPEEEGQMSS 282
S + S P +K ++ + P K P E + S
Sbjct: 2643 SSSSSSPSPAKPGPQALPKPASPKKPPPGERRSRS 2677
Score = 50.4 bits (119), Expect = 2e-06
Identities = 55/155 (35%), Positives = 70/155 (45%), Gaps = 9/155 (5%)
Query: 106 RGRSRGGGYGRRSRSYGRRSRSPRRRHRSRSRGPSCSRSRSRSRYRGSRYSRSPYSRSPY 165
R RSR RR RS R S RRR RSR+ + RSRSR+ R SRS P
Sbjct: 1981 RSRSRTSPVTRR-RSRSRTSPVTRRRSRSRTSPVTRRRSRSRTPPAIRRRSRSRTPLLPR 2039
Query: 166 SRSRYSRSPY-----SRSRYRESRYGGSHYSSSGYSNSRYSRYHSSRSHSKSGSSTSSRS 220
RSR SRSP SRSR + G + S + R S SS S+S + ++R+
Sbjct: 2040 KRSR-SRSPLAIRRRSRSRTPRTARGKRSLTRSPPAIRRRSASGSSSDRSRSATPPATRN 2098
Query: 221 ASTSKSS--SARRSKSSSVSRSRSRSRSSSMTRSP 253
S S++ + S+ S SR RSP
Sbjct: 2099 HSGSRTPPVALNSSRMSCFSRPSMSPTPLDRCRSP 2133
Score = 50.1 bits (118), Expect = 2e-06
Identities = 51/188 (27%), Positives = 78/188 (41%), Gaps = 14/188 (7%)
Query: 95 RDLPRSRQGEPRGRSRGGGYGRRSRSYGRRSRSPR-RRHRSRSRGPSCSRSRSRSRYRGS 153
R+ SR P+ + + ++ + GRRS S RR R +S RS S S+ R
Sbjct: 175 RESSSSRSPTPKQKKK-----KKKKDRGRRSESSSPRRERKKSSKKKKHRSESESKKRKH 229
Query: 154 RYSRSPYSRSPYSRSRYSRS----PYSRSRYRESRYGGSHYSSSGYSNSRYSRYHSSRSH 209
R S +P S+ + RS P +SR SSS S SR SR ++++H
Sbjct: 230 R-SPTPKSKRKSKDKKRKRSRSTTPAPKSRRAHRSTSADSASSSDTSRSR-SRSAAAKTH 287
Query: 210 SKSGSSTSSRSASTSKSSSARRSKSSSVSRSRSRSRSSSMTRSP--PRVSKRKSKSRSRS 267
+ + + S AS + + ++ S + T+ P P K K K +
Sbjct: 288 TTALAGRSPSPASGRRGEGDAPFSEPGTTSTQRPSSPETATKQPSSPYEDKDKDKKEKSA 347
Query: 268 KRPPKSPE 275
RP SPE
Sbjct: 348 TRPSPSPE 355
Score = 49.7 bits (117), Expect = 3e-06
Identities = 67/239 (28%), Positives = 86/239 (35%), Gaps = 55/239 (23%)
Query: 93 GRRDLPRSRQGEPRGRSRGGGYGRRSRSYGRRSRSPRRRHRSRSRGPSCSRSRSRSRYRG 152
G P+ + P RSR G +++S R+P RR RS S P +S++ SR
Sbjct: 781 GSSPCPKQKSQTPPRRSRSGSSQPKAKS-----RTPPRRSRSSSSPPPKQKSKTPSRQSH 835
Query: 153 SRYSRSPYSRS--------------------PYSRSRYSRSP----YSRSRYRESRYGGS 188
S S P +S P RS + SP SR+ R S G S
Sbjct: 836 SSSSPHPKVKSGTPPRQGSITSPQANEQSVTPQRRSCFESSPDPELKSRTPSRHSCSGSS 895
Query: 189 HYSSSGYSNSRYSRYHSS------------RSHSKSGSSTSSRSASTSKSSSARRSKSSS 236
+ R S SS R S SGSS+ S S TS+++ R S
Sbjct: 896 PPRVKSSTPPRQSPSRSSSPQPKVKAIISPRQRSHSGSSSPSPSRVTSRTTPRRSRSVSP 955
Query: 237 VSRSRSR--------SRSSSMTRSPPRVSKRKSKSRSRSKRP------PKSPEEEGQMS 281
S SR SS T+ P R+S S S S P P P G S
Sbjct: 956 CSNVESRLLPRYSHSGSSSPDTKVKPETPPRQSHSGSISPYPKVKAQTPPGPSLSGSKS 1014
Score = 48.5 bits (114), Expect = 6e-06
Identities = 62/179 (34%), Positives = 81/179 (45%), Gaps = 16/179 (8%)
Query: 106 RGRSRGGGYGRRSRSYGRRSRSPRRRHRSRSRGPSCSRSRSRSRYR-GSRYSRSPYSRSP 164
R RSR G S +SR RR RS S + R+ R + GS S P + +P
Sbjct: 1574 RQRSRSGS----SPEVDSKSRLSPRRSRSGSSPEVKDKPRAAPRAQSGSDSSPEPKAPAP 1629
Query: 165 YSRSRYSRSPYSRSRYRESRYGGSHYSSSGYS--NSRYSRYHSSRS-HSKSGSST----- 216
+ R SRS S S G S SS SR +R S S K+ S T
Sbjct: 1630 RALPRRSRSGSSSKGRGPSPEGSSSTESSPEHPPKSRTARRGSRSSPEPKTKSRTPPRRR 1689
Query: 217 SSRSAS--TSKSSSARRSKSSSVSRSRSRSRSSSMTRSPPRVSKRKSKSRSRSKRPPKS 273
SSRS+ T K+ +RRS+S+S S +RSR+ R P VS + +SRS R +S
Sbjct: 1690 SSRSSPELTRKARLSRRSRSAS-SSPETRSRTPPRHRRSPSVSSPEPAEKSRSSRRRRS 1747
Score = 47.0 bits (110), Expect = 2e-05
Identities = 60/185 (32%), Positives = 78/185 (42%), Gaps = 27/185 (14%)
Query: 115 GRRSRSYGRR------SRSPRRRHRSRSRGPSCSRSRSRSRYRGSRYSRSPY----SRSP 164
G+RSRS + S SP+ R S S S +++R+ R R SR SP SR
Sbjct: 1534 GQRSRSGSSQELDVKPSASPQERSESDSSPDSKAKTRTPLRQR-SRSGSSPEVDSKSRLS 1592
Query: 165 YSRSRYSRSPYSRSRYRESRYGGSHYSSSGYSNSRYSRYHSSRSHSKSGSSTSSRSASTS 224
RSR SP + + R + S SS + R RS +SGSS+ R S
Sbjct: 1593 PRRSRSGSSPEVKDKPRAAPRAQSGSDSSPEPKAPAPRALPRRS--RSGSSSKGRGPSPE 1650
Query: 225 KSSSARRSKS----SSVSRSRSRSRSSSMT--RSPPRVSK--------RKSKSRSRSKRP 270
SSS S S +R SRS T R+PPR RK++ RS+
Sbjct: 1651 GSSSTESSPEHPPKSRTARRGSRSSPEPKTKSRTPPRRRSSRSSPELTRKARLSRRSRSA 1710
Query: 271 PKSPE 275
SPE
Sbjct: 1711 SSSPE 1715
Score = 46.2 bits (108), Expect = 3e-05
Identities = 58/268 (21%), Positives = 104/268 (38%), Gaps = 43/268 (16%)
Query: 47 REPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVARYGRRDLPRSRQGEPR 106
++P + P+ ++ VR E++ + ++ + + GRR S + E +
Sbjct: 161 KQPAPEPPKPYSLVR----------ESSSSRSPTPKQKKKKKKKDRGRRSESSSPRRERK 210
Query: 107 GRSRGGGYGRRSRSYGRRSRSPRRRHRSRSRGPSCSRSRSRS---RYRGSRYSRSPYSRS 163
S+ + S S R+ RSP + + +S+ RSRS + + R + S S S S
Sbjct: 211 KSSKKKKHRSESESKKRKHRSPTPKSKRKSKDKKRKRSRSTTPAPKSRRAHRSTSADSAS 270
Query: 164 PYSRSRYSRSPYSRSRYRESRYGGSHYSSS----GYSNSRYSRYHSSRSHSKSGSSTSSR 219
SR SRS + ++ + G S + G ++ +S ++ + S T+++
Sbjct: 271 SSDTSR-SRSRSAAAKTHTTALAGRSPSPASGRRGEGDAPFSEPGTTSTQRPSSPETATK 329
Query: 220 SASTSKSSSARRSKSSSVSRSRSRSRSSSMTRSPPR------------------------ 255
S+ + K S +R SS PP
Sbjct: 330 QPSSPYEDKDKDKKEKSATRPSPSPERSSTGPEPPAPTPLLAERHGGSPQPLATTPLSQE 389
Query: 256 -VSKRKSKSRSRSKRPPKSPEEEGQMSS 282
V+ S +R + PPKSPE+ Q SS
Sbjct: 390 PVNPPSEASPTRDRSPPKSPEKLPQSSS 417
Score = 45.1 bits (105), Expect = 7e-05
Identities = 60/210 (28%), Positives = 89/210 (42%), Gaps = 43/210 (20%)
Query: 98 PRSRQGEPRGRSRGGGYGRRSRSYGRRSRSPRRRH---------RSRSRGPSCSRSRSRS 148
P++ PR RSR S + +P+R ++ +R P RSRS S
Sbjct: 1486 PKALPQTPRPRSRSPS----SPELNNKCLTPQRERSGSESSVDQKTVARTPLGQRSRSGS 1541
Query: 149 RYRGSRYSRSPYSRSPYSRSRYSRSPYSRSRYR-----ESRYGGS-HYSSSGYSNSRYSR 202
S+ S SP RS SP S+++ R SR G S S + R SR
Sbjct: 1542 ----SQELDVKPSASPQERSESDSSPDSKAKTRTPLRQRSRSGSSPEVDSKSRLSPRRSR 1597
Query: 203 YHSSRS---------HSKSGSSTSSRSASTSKSSSARRSKSSSVSRSRSRS-RSSSMTRS 252
SS ++SGS +S + + + RRS+S S S+ R S SS T S
Sbjct: 1598 SGSSPEVKDKPRAAPRAQSGSDSSPEPKAPAPRALPRRSRSGSSSKGRGPSPEGSSSTES 1657
Query: 253 PP------RVSKRKSKS----RSRSKRPPK 272
P R ++R S+S +++S+ PP+
Sbjct: 1658 SPEHPPKSRTARRGSRSSPEPKTKSRTPPR 1687
Score = 43.9 bits (102), Expect = 2e-04
Identities = 45/152 (29%), Positives = 64/152 (42%), Gaps = 10/152 (6%)
Query: 128 PRRRHRSRSRGPSCSRSRSRSRYRGSRYSRSPYSRSPYSRSRYSRSPYSRSRYRESRYGG 187
P +R R P S + + S SP S P SR++ S S + + G
Sbjct: 394 PSEASPTRDRSPPKSPEKLP---QSSSSESSPPSPQPTKVSRHASS--SPESPKPAPAPG 448
Query: 188 SH--YSSSGYSNSRY---SRYHSSRSHSKSGSSTSSRSASTSKSSSARRSKSSSVSRSRS 242
SH SSS S +R ++ S SH+ S SRS +T+K +R + SRS
Sbjct: 449 SHREISSSPTSKNRSHGRAKRDKSHSHTPSRRMGRSRSPATAKRGRSRSRTPTKRGHSRS 508
Query: 243 RSRSSSMTRSPPRVSKRKSKSRSRSKRPPKSP 274
RS +RS R + +S R R P+ P
Sbjct: 509 RSPQWRRSRSAQRWGRSRSPQRRGRSRSPQRP 540
Score = 42.0 bits (97), Expect = 6e-04
Identities = 55/191 (28%), Positives = 76/191 (39%), Gaps = 15/191 (7%)
Query: 99 RSRQGEPRGRSRGGGYGRRSRSYGRRSRSPRRRHRSRSRGPSCSRSRSRSRYRGSRYSRS 158
RSR G G G G R G SP + R+ PS RS S ++
Sbjct: 1438 RSRSGSSPGLRDGSGTPSRHSLSGS---SPGMKDIPRT--PSRGRSECDSSPEPKALPQT 1492
Query: 159 PYSRSPYSRSRYSRSPYSRSRYRESRYGGSHYSSSGYSNSRYSRYHSSRSHSKSG----S 214
P P SRS S ++ + GS S + +R SRS S
Sbjct: 1493 P---RPRSRSPSSPELNNKCLTPQRERSGSESSVDQKTVARTPLGQRSRSGSSQELDVKP 1549
Query: 215 STSSRSASTSKSSSARRSKSSSVSRSRSRSRSSSMTRSPPRVSKRKSKSRSRSK---RPP 271
S S + S S SS ++K+ + R RSRS SS S R+S R+S+S S + +P
Sbjct: 1550 SASPQERSESDSSPDSKAKTRTPLRQRSRSGSSPEVDSKSRLSPRRSRSGSSPEVKDKPR 1609
Query: 272 KSPEEEGQMSS 282
+P + S
Sbjct: 1610 AAPRAQSGSDS 1620
Score = 40.0 bits (92), Expect = 0.002
Identities = 38/124 (30%), Positives = 46/124 (37%), Gaps = 5/124 (4%)
Query: 159 PYSRSPYSRSRYSRSPYSRSRYRESRYGGSHYSSSGYSNSRYSRYHSSRSHSKSGSSTSS 218
P +P R R S S S S S S SSS S+S SS S S S SS+S
Sbjct: 2595 PPEPTPAKRKRRSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----SSSSSSSSSSSSSP 2649
Query: 219 RSASTSKSSSARRSKSSSVSRSRSRSRSSSMTRSPPRVSKRKSKSRSRSKRPPKSPEEEG 278
A + + + RSRS R S+ S S +RP P
Sbjct: 2650 SPAKPGPQALPKPASPKKPPPGERRSRSPRKPIDSLRDSRSLSYSPVERRRPSPQPSPRD 2709
Query: 279 QMSS 282
Q SS
Sbjct: 2710 QQSS 2713
Score = 39.3 bits (90), Expect = 0.004
Identities = 44/151 (29%), Positives = 60/151 (39%), Gaps = 16/151 (10%)
Query: 144 SRSRSRYRGSRYSRSPYSRSPYSRSRYSRSPYSRSRYRESRYGGSHYSSSGYSNSRYSRY 203
SR RS S + R+P RSR SP R+ S +S SG S
Sbjct: 1415 SRERSSSASSPEMKDGLPRTPSRRSRSGSSP----GLRDGSGTPSRHSLSGSSPGMKDIP 1470
Query: 204 HS-SRSHSKSGSS-------TSSRSASTSKSSSARRSKSSSVSRSRSRSRSS----SMTR 251
+ SR S+ SS + R S S SS +K + R RS S SS ++ R
Sbjct: 1471 RTPSRGRSECDSSPEPKALPQTPRPRSRSPSSPELNNKCLTPQRERSGSESSVDQKTVAR 1530
Query: 252 SPPRVSKRKSKSRSRSKRPPKSPEEEGQMSS 282
+P R S+ +P SP+E + S
Sbjct: 1531 TPLGQRSRSGSSQELDVKPSASPQERSESDS 1561
Score = 38.5 bits (88), Expect = 0.007
Identities = 52/176 (29%), Positives = 68/176 (38%), Gaps = 27/176 (15%)
Query: 127 SPRRRHRSRSRGPSCSRSRSR---------SRYRGSRYSRS--------PYSRSPYSRSR 169
SP R+RSR P + S+SR S G S+S P S P + S
Sbjct: 2398 SPPLLDRARSRTPPSAPSQSRMTSERAPSPSSRMGQAPSQSLLPPAQDQPRSPVPSAFSD 2457
Query: 170 YSR------SPYSRSRYRESRYGGSHYSSSGYSNSRYSRYHSSRSHSKSGSSTSSRSAST 223
SR +P + S+ S + SS+G N S HS G +S A
Sbjct: 2458 QSRCLIAQTTPVAGSQSLSSGAVATTTSSAGDHNGMLSVPAPGVPHSDVGEPPASTGAQQ 2517
Query: 224 SKSSSA----RRSKSSSVSRSRSRSRSSSMTRSPPRVSKRKSKSRSRSKRPPKSPE 275
+ +A + +SSS S S S S SSS + S S S S S P PE
Sbjct: 2518 PSALAALQPAKERRSSSSSSSSSSSSSSSSSSSSSSSSSGSSSSDSEGSSLPVQPE 2573
Score = 35.0 bits (79), Expect = 0.074
Identities = 48/176 (27%), Positives = 72/176 (40%), Gaps = 26/176 (14%)
Query: 126 RSPRRRHRSRSR--GPSCSRSRSRSRYRGSRYSRSPYSRSPYSRSRYSRSPYSRSRYRES 183
+SP + +S S P + SR+ S + +P S S SP S++R
Sbjct: 407 KSPEKLPQSSSSESSPPSPQPTKVSRHASSSPESPKPAPAPGSHREISSSPTSKNRSH-- 464
Query: 184 RYGGSHYSSSGYSNSRYSRYHSSRSHSKSGSSTSSRSASTSKSSSARRSKSSSVSRSRS- 242
G +S++ R SRS + + S T + S RS+S RSRS
Sbjct: 465 ---GRAKRDKSHSHTPSRRMGRSRSPATAKRGRSRSRTPTKRGHS--RSRSPQWRRSRSA 519
Query: 243 ----RSRS---SSMTRSPPRV-------SKRKSKSRS--RSKRPPKSPEEEGQMSS 282
RSRS +RSP R ++R+ +SRS R + +SP G+ S
Sbjct: 520 QRWGRSRSPQRRGRSRSPQRPGWSRSRNTQRRGRSRSARRGRSHSRSPATRGRSRS 575
Score = 34.7 bits (78), Expect = 0.097
Identities = 48/186 (25%), Positives = 71/186 (38%), Gaps = 18/186 (9%)
Query: 99 RSRQGEPRGRSRGGGYGRRSRSYGRRSRSPRRRHRSRSRGPSCSRSRSRSR--------Y 150
RSR PR R + RRS S RSRS P +R+ S SR
Sbjct: 2053 RSRSRTPRTARGKRSLTRSPPAIRRRSASGSSSDRSRSATPPATRNHSGSRTPPVALNSS 2112
Query: 151 RGSRYSRSPYSRSPYSRSRY--SRSPYSRSRYRES---RYGGSHYSSSGYSNSRYSRYHS 205
R S +SR S +P R R P SR S + GGS G + R
Sbjct: 2113 RMSCFSRPSMSPTPLDRCRSPGMLEPLGSSRTPMSVLQQAGGSMMDGPGPRIPDHQRTSV 2172
Query: 206 SRSHSKSGSSTSSRSASTSKSSSARRSKSSSVSRSRSRSRSSSMTRSPPRVSKRKSKSRS 265
+H++S + + + S + S+S + +R S + P +S R + + +
Sbjct: 2173 PENHAQSRIALALTAISLGTA-----RPPPSMSAAGLAARMSQVPAPVPLMSLRTAPAAN 2227
Query: 266 RSKRPP 271
+ R P
Sbjct: 2228 LASRIP 2233
Score = 30.8 bits (68), Expect = 1.4
Identities = 34/173 (19%), Positives = 53/173 (30%)
Query: 106 RGRSRGGGYGRRSRSYGRRSRSPRRRHRSRSRGPSCSRSRSRSRYRGSRYSRSPYSRSPY 165
R RSR + + RS SP R P + ++ S + + SPY
Sbjct: 276 RSRSRSAAAKTHTTALAGRSPSPASGRRGEGDAPFSEPGTTSTQRPSSPETATKQPSSPY 335
Query: 166 SRSRYSRSPYSRSRYRESRYGGSHYSSSGYSNSRYSRYHSSRSHSKSGSSTSSRSASTSK 225
+ S +R S S + H + + S +
Sbjct: 336 EDKDKDKKEKSATRPSPSPERSSTGPEPPAPTPLLAERHGGSPQPLATTPLSQEPVNPPS 395
Query: 226 SSSARRSKSSSVSRSRSRSRSSSMTRSPPRVSKRKSKSRSRSKRPPKSPEEEG 278
+S R +S S + SSS + P + S+ S S PK G
Sbjct: 396 EASPTRDRSPPKSPEKLPQSSSSESSPPSPQPTKVSRHASSSPESPKPAPAPG 448
Score = 30.4 bits (67), Expect = 1.8
Identities = 26/78 (33%), Positives = 31/78 (39%), Gaps = 16/78 (20%)
Query: 123 RRSRSPRR----------------RHRSRSRGPSCSRSRSRSRYRGSRYSRSPYSRSPYS 166
RRSRSPR+ R S PS +S S RGSR + SRSP
Sbjct: 2673 RRSRSPRKPIDSLRDSRSLSYSPVERRRPSPQPSPRDQQSSSSERGSRRGQRGDSRSPSH 2732
Query: 167 RSRYSRSPYSRSRYRESR 184
+ R R+R SR
Sbjct: 2733 KRRRETPSPRPMRHRSSR 2750
Score = 29.3 bits (64), Expect = 4.1
Identities = 20/72 (27%), Positives = 30/72 (41%), Gaps = 1/72 (1%)
Query: 212 SGSSTSSRSASTSKSSSARRSKSSSVSRSRSRSRSSSMTRSPPRVSKRKSKSRSRSKR-P 270
S S S + + + + + S R SS +RSP K+K K + R +R
Sbjct: 142 SDSYVDGSSFDPQRRAREAKQPAPEPPKPYSLVRESSSSRSPTPKQKKKKKKKDRGRRSE 201
Query: 271 PKSPEEEGQMSS 282
SP E + SS
Sbjct: 202 SSSPRRERKKSS 213
Score = 28.9 bits (63), Expect = 5.3
Identities = 40/143 (27%), Positives = 54/143 (37%), Gaps = 17/143 (11%)
Query: 138 GPSCSRSRS---RSRYRGSRYSRSPYSRSPYSRSRYSRSPYSRSRYRESRYGGSHYSSSG 194
GPS S S+S + + + S P S S + + S P ES +G S G
Sbjct: 1006 GPSLSGSKSPCPQEKSKDSLVQSCPGSLSLCAGVKSSTPP------GESYFGVSSLQLKG 1059
Query: 195 YSNSRYSRYHSSRSHSKSGSSTSSR-SASTSKSSSARRSKSSSVSRSRSRSRSSSMTRSP 253
S + S H SS R S S S S ++ S RSRS S + +
Sbjct: 1060 QSQT-------SPDHRSDTSSPEVRQSHSESPSLQSKSQTSPKGGRSRSSSPVTELASRS 1112
Query: 254 PRVSKRKSKSRSRSKRPPKSPEE 276
P R S S + SPE+
Sbjct: 1113 PIRQDRGEFSASPMLKSGMSPEQ 1135
>gi|242117971 RNA binding motif protein, X-linked-like 1 [Homo
sapiens]
Length = 390
Score = 85.9 bits (211), Expect = 4e-17
Identities = 91/293 (31%), Positives = 115/293 (39%), Gaps = 55/293 (18%)
Query: 16 LKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAM 75
L + L T+ +L VF KYGR+ +V + ++ T RGFAFV F DA+DA M
Sbjct: 10 LFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPADAKDAARDM 69
Query: 76 DGAELDGRELRVQVA--------RYGRRDLPRSRQGEPR--GRSRGGGYGRR-------- 117
+G LDG+ ++V+ A R+G PRSR G PR G RGG G R
Sbjct: 70 NGKSLDGKAIKVEQATKPSFERGRHGPPPPPRSR-GPPRGFGAGRGGSGGTRGPPSRGGH 128
Query: 118 ----------SRSYGRRSRSPRRRHRSRSRGPSCSRSRSRSRYRGS--RYSRSPYSRSPY 165
+ S R +R RS GPS RS R S R+P SR
Sbjct: 129 MDDGGYSMNFNMSSSRGPLPVKRGPPPRSGGPSPKRSAPSGLVRSSSGMGGRAPLSRGRD 188
Query: 166 SRS---RYSRSPYSRSRYRESRYGG----SHYSSSGYSNSRYSRYHS---------SRSH 209
S R P R Y R G YSS Y +SR +R ++ H
Sbjct: 189 SYGGPPRREPLPSRRDVYLSPRDDGYSTKDSYSSRDYPSSRDTRDYAPPPRDYTYRDYGH 248
Query: 210 SKSGSSTSSRSASTSKSSSARRSKSSSVS--------RSRSRSRSSSMTRSPP 254
S S SR R S S S SRS+ +TR PP
Sbjct: 249 SSSRDDYPSRGYGDRDGYGRDRDYSDHPSGGSYRDSYESYGNSRSAPLTRGPP 301
>gi|21361809 RNA binding motif protein, X-linked-like 1 [Homo
sapiens]
Length = 390
Score = 85.9 bits (211), Expect = 4e-17
Identities = 91/293 (31%), Positives = 115/293 (39%), Gaps = 55/293 (18%)
Query: 16 LKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAM 75
L + L T+ +L VF KYGR+ +V + ++ T RGFAFV F DA+DA M
Sbjct: 10 LFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPADAKDAARDM 69
Query: 76 DGAELDGRELRVQVA--------RYGRRDLPRSRQGEPR--GRSRGGGYGRR-------- 117
+G LDG+ ++V+ A R+G PRSR G PR G RGG G R
Sbjct: 70 NGKSLDGKAIKVEQATKPSFERGRHGPPPPPRSR-GPPRGFGAGRGGSGGTRGPPSRGGH 128
Query: 118 ----------SRSYGRRSRSPRRRHRSRSRGPSCSRSRSRSRYRGS--RYSRSPYSRSPY 165
+ S R +R RS GPS RS R S R+P SR
Sbjct: 129 MDDGGYSMNFNMSSSRGPLPVKRGPPPRSGGPSPKRSAPSGLVRSSSGMGGRAPLSRGRD 188
Query: 166 SRS---RYSRSPYSRSRYRESRYGG----SHYSSSGYSNSRYSRYHS---------SRSH 209
S R P R Y R G YSS Y +SR +R ++ H
Sbjct: 189 SYGGPPRREPLPSRRDVYLSPRDDGYSTKDSYSSRDYPSSRDTRDYAPPPRDYTYRDYGH 248
Query: 210 SKSGSSTSSRSASTSKSSSARRSKSSSVS--------RSRSRSRSSSMTRSPP 254
S S SR R S S S SRS+ +TR PP
Sbjct: 249 SSSRDDYPSRGYGDRDGYGRDRDYSDHPSGGSYRDSYESYGNSRSAPLTRGPP 301
>gi|4506901 splicing factor, arginine/serine-rich 3 [Homo sapiens]
Length = 164
Score = 84.7 bits (208), Expect = 8e-17
Identities = 72/175 (41%), Positives = 86/175 (49%), Gaps = 32/175 (18%)
Query: 18 VDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDG 77
V NL + L R F YG + V++ R P GFAFV F D RDA DA +DG
Sbjct: 14 VGNLGNNGNKTELERAFGYYGPLRSVWVARNPP-----GFAFVEFEDPRDAADAVRELDG 68
Query: 78 AELDGRELRVQVARYGRRDLPRSRQGEPRGRSRG--GGYGRRSR-SYGRRS-----RSPR 129
L G +RV+++ GE R R+RG +GRR R Y RRS RSPR
Sbjct: 69 RTLCGCRVRVELS-----------NGEKRSRNRGPPPSWGRRPRDDYRRRSPPPRRRSPR 117
Query: 130 RRHRSRSRGPSCSRSRSRSRYRGSRYSRSPYSRSPYSRSRYSRSPYSRSRYRESR 184
RR SRSR S SR R R R + P SRS +SRSR SRSR E +
Sbjct: 118 RRSFSRSRSRSLSRDRRRERSLSRERNHKP-SRS-FSRSR------SRSRSNERK 164
>gi|5902076 splicing factor, arginine/serine-rich 1 isoform 1 [Homo
sapiens]
Length = 248
Score = 84.0 bits (206), Expect = 1e-16
Identities = 85/259 (32%), Positives = 109/259 (42%), Gaps = 39/259 (15%)
Query: 18 VDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDG 77
V NL + VF KYG + D+ + + FAFV F D RDA+DA DG
Sbjct: 20 VGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDG 76
Query: 78 AELDGRELRVQVARYGRRDLPRSRQGEPRGRSRGGGYGRRSRSYGRRSRSPRRRHRSRSR 137
+ DG LRV+ PRS +G RG GGG G +PR R+
Sbjct: 77 YDYDGYRLRVE--------FPRSGRGTGRGGGGGGGGG-----------APRGRY----- 112
Query: 138 GPSCSRSRSRSRYRGSRYSRSPYSRSPYSRSRYSRSPYSRSRYRES-------RYGGSHY 190
GP RS +R G S S + R + YR+ R Y
Sbjct: 113 GPPSRRSENRVVVSGLPPSGSWQDLKDHMRE--AGDVCYADVYRDGTGVVEFVRKEDMTY 170
Query: 191 SSSGYSNSRYSRYHSSRSHSKSGSSTSSRSASTSKSSSARRSKSSSVSRSRSRSRSSSMT 250
+ N+++ R H + RS S +S S RS+S S SRS SRSRS S
Sbjct: 171 AVRKLDNTKF-RSHEGETAYIRVKVDGPRSPSYGRSRSRSRSRSRSRSRSNSRSRSYSPR 229
Query: 251 RS--PPRVSKRKSKSRSRS 267
RS PR S R S+SRSR+
Sbjct: 230 RSRGSPRYSPRHSRSRSRT 248
>gi|50083281 KIAA1853 protein [Homo sapiens]
Length = 611
Score = 83.6 bits (205), Expect = 2e-16
Identities = 74/183 (40%), Positives = 95/183 (51%), Gaps = 15/183 (8%)
Query: 99 RSRQGEPRGRSRGGGYGRRSRSYGRRSRSPRRRHRSRSRGPSCSRSRSRSRYRGSRYSRS 158
RS E R SR Y +S G+RS P R RSR R PS SR S SR R +YS
Sbjct: 420 RSTSSEKRSYSRSPSYSSKS---GKRS-PPSRSSRSR-RSPSYSRY-SPSRERDPKYSEK 473
Query: 159 PYSRSPYSRSRYSRSPYSRSRYRESRYGGSHYSSSGYSNSR-----YSRYHSSRSHSKSG 213
+ R+R R YS R R R SH + +++R Y R S S S S
Sbjct: 474 DSQQRERERARRRRRSYSPMRKRR-RDSPSHLEARRITSARKRPIPYYRPSPSSSGSLSS 532
Query: 214 SST---SSRSASTSKSSSARRSKSSSVSRSRSRSRSSSMTRSPPRVSKRKSKSRSRSKRP 270
+S+ SS S S S+S S RS+S S RSR+R+ SSS +RSP S+ +S+SRSRS+
Sbjct: 533 TSSWYSSSSSRSASRSYSRSRSRSRSRRRSRTRTSSSSSSRSPSPGSRSRSRSRSRSRSR 592
Query: 271 PKS 273
+S
Sbjct: 593 SRS 595
Score = 51.2 bits (121), Expect = 1e-06
Identities = 64/185 (34%), Positives = 83/185 (44%), Gaps = 15/185 (8%)
Query: 99 RSRQGEPRGRSRGGGYGRRSRSYGRRSRSPRRRHRS--RSRGPSCSRSRSRSRYRGSRYS 156
RSR G+ +G GG R + G S S S +++G SR R SR
Sbjct: 303 RSR-GQEKGSPSGGLSKSRELNSGNTSDSGNSFTTSSPQNKGAMLENLSPTSRGRESRGF 361
Query: 157 RSPYSRSPYSRSRYSRSPYSRSRYRESRYGGSHYSSSGYSNSRYSRYHSSRSHSKSGSS- 215
+SP + +S S R S G SSS Y+++R S HSSRS + S
Sbjct: 362 QSPCLEC----AEVKKSSLVPSTARSSPMKGCSRSSS-YASTRSSS-HSSRSPNPRASPR 415
Query: 216 -TSSRSASTSKSSSARRSKSSSVSRSRSRSRSSSMTRSPPRVSKRKSKSRSRSKRPPKSP 274
T SRS S+ K S +R SS S RS SS +R P S R S SR +R PK
Sbjct: 416 YTQSRSTSSEKRSYSRSPSYSSKSGKRSPPSRSSRSRRSPSYS-RYSPSR---ERDPKYS 471
Query: 275 EEEGQ 279
E++ Q
Sbjct: 472 EKDSQ 476
Score = 48.9 bits (115), Expect = 5e-06
Identities = 58/178 (32%), Positives = 74/178 (41%), Gaps = 32/178 (17%)
Query: 116 RRSRSYGRR--SRSPRRRHRSRSRGPSCSRSRSRSRYRGSRYSRSPYSRSPYSRSRYSRS 173
RRS S RR S SP+ + R R SRSR R +R R+ R P SRS S SR S
Sbjct: 145 RRSFSKKRRHSSSSPKSKRRDEKRHKKQSRSRPRKSHR-HRHHRCP-SRSQSSESRPSSC 202
Query: 174 PYSRSRYRESRYGGSHYSSSGYSNSRYSRYHSSRSHSKSGSSTSSRSAS----------- 222
ESR+ G S R+SR S S + SSR S
Sbjct: 203 --------ESRHRGRSPEEGQKSRRRHSRRCSKTLCKDSPEAQSSRPPSQPLQMLGYLSA 254
Query: 223 ----TSKSSSAR--RSKSSSVSRSRSRSR---SSSMTRSPPRVSKRKSKSRSRSKRPP 271
T S+A +S ++ SR RS+ S + T SPP ++SR + K P
Sbjct: 255 RGVITGSGSAADLFTKTASPLTTSRGRSQEYDSGNDTSSPPSTQTSSARSRGQEKGSP 312
Score = 45.4 bits (106), Expect = 5e-05
Identities = 48/163 (29%), Positives = 63/163 (38%), Gaps = 29/163 (17%)
Query: 118 SRSYGRRSRSPRRRHRSRSRGPSCSRSRSRSRYRGSRYSRSPYSRSPYSRSRYSRSPYSR 177
SR ++ +S R++ R R S YS SP + S+ + S
Sbjct: 106 SRGKKKKKKSTRKKRR-----------------RSSSYSPSPVKKKKKKSSKKHKRRRSF 148
Query: 178 SRYRESRYGGSHYSSSGYSNSRYSRYHSSRSHS---KSGSSTSSRSASTSKSSSARRSKS 234
S+ R H SSS S R + H +S S KS R S S+SS +R S
Sbjct: 149 SKKRR------HSSSSPKSKRRDEKRHKKQSRSRPRKSHRHRHHRCPSRSQSSESRPSSC 202
Query: 235 SSVSRSRS-RSRSSSMTRSPPRVSKR--KSKSRSRSKRPPKSP 274
S R RS S R R SK K ++S RPP P
Sbjct: 203 ESRHRGRSPEEGQKSRRRHSRRCSKTLCKDSPEAQSSRPPSQP 245
Score = 44.7 bits (104), Expect = 9e-05
Identities = 45/114 (39%), Positives = 54/114 (47%), Gaps = 11/114 (9%)
Query: 86 RVQVARYGRRDLPRSRQGEPRGRSRGGGYGRRSRSYGRRSRSPRRRHRSRSRGPSCSRSR 145
R+ AR +R +P R S S S R + R RSRSR R R
Sbjct: 508 RITSAR--KRPIPYYRPSPSSSGSLSSTSSWYSSSSSRSASRSYSRSRSRSRS----RRR 561
Query: 146 SRSRYRGSRYSRSPYSRSPYSRSRYSRSPYSRSRYRESRYGGSHYSSSGYSNSR 199
SR+R S SRSP SP SRSR SRS SRSR R S+ S+ YS++R
Sbjct: 562 SRTRTSSSSSSRSP---SPGSRSR-SRS-RSRSRSRSRSQSRSYSSADSYSSTR 610
Score = 43.5 bits (101), Expect = 2e-04
Identities = 34/73 (46%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
Query: 90 ARYGRRDLPRSRQGEPRGRSRGGGYGRRSRSYGRRSRSPRRRHRSRSRGPSCSRSRSRSR 149
+R R RSR R RSR R S S RS SP R RSRSR S SRSRS+SR
Sbjct: 542 SRSASRSYSRSRS---RSRSRRRSRTRTSSSSSSRSPSPGSRSRSRSRSRSRSRSRSQSR 598
Query: 150 YRGSRYSRSPYSR 162
S S S R
Sbjct: 599 SYSSADSYSSTRR 611
Score = 41.2 bits (95), Expect = 0.001
Identities = 25/109 (22%), Positives = 47/109 (43%)
Query: 161 SRSPYSRSRYSRSPYSRSRYRESRYGGSHYSSSGYSNSRYSRYHSSRSHSKSGSSTSSRS 220
+R P R+ +P ++ S G H ++ + + R + R + ++S
Sbjct: 38 ARKPLPRTEPQNNPVVPAQDGPSEKLGQHLATEPLGTNSWERDKTCRELGATRGHSASHD 97
Query: 221 ASTSKSSSARRSKSSSVSRSRSRSRSSSMTRSPPRVSKRKSKSRSRSKR 269
+ S+R K S + R RSSS + SP + K+KS + + +R
Sbjct: 98 KDLTPPPSSRGKKKKKKSTRKKRRRSSSYSPSPVKKKKKKSSKKHKRRR 146
Score = 34.7 bits (78), Expect = 0.097
Identities = 34/97 (35%), Positives = 43/97 (44%), Gaps = 19/97 (19%)
Query: 205 SSRSHSKSGSSTSS---RSASTSKSSSARRSKSSSVSRSRSRS------RSSSMTRSPPR 255
SSR K ST RS+S S S ++ K SS R RS SSS +S R
Sbjct: 105 SSRGKKKKKKSTRKKRRRSSSYSPSPVKKKKKKSSKKHKRRRSFSKKRRHSSSSPKSKRR 164
Query: 256 VSKR-KSKSRSRSKR---------PPKSPEEEGQMSS 282
KR K +SRSR ++ P +S E + SS
Sbjct: 165 DEKRHKKQSRSRPRKSHRHRHHRCPSRSQSSESRPSS 201
>gi|56699409 RNA binding motif protein, X-linked [Homo sapiens]
Length = 391
Score = 82.8 bits (203), Expect = 3e-16
Identities = 92/293 (31%), Positives = 113/293 (38%), Gaps = 55/293 (18%)
Query: 16 LKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAM 75
L + L T+ +L VF KYGR+ +V + ++ T RGFAFV F DA+DA M
Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 69
Query: 76 DGAELDGRELRVQVA--------RYGRRDLPRSRQGEPRG--------------RSRG-- 111
+G LDG+ ++V+ A R G PRSR G PRG SRG
Sbjct: 70 NGKSLDGKAIKVEQATKPSFESGRRGPPPPPRSR-GPPRGLRGGRGGSGGTRGPPSRGGH 128
Query: 112 ---GGYGRRSRSYGRRSRSP-RRRHRSRSRGPSCSRSRSRSRYRGS--RYSRSPYSRSPY 165
GGY R P +R RS GP RS R S R+P SR
Sbjct: 129 MDDGGYSMNFNMSSSRGPLPVKRGPPPRSGGPPPKRSAPSGPVRSSSGMGGRAPVSRGRD 188
Query: 166 SRS---RYSRSPYSRSRYRESRYGG----SHYSSSGYSNSRYSRYHS---------SRSH 209
S R P R Y R G YSS Y +SR +R ++ H
Sbjct: 189 SYGGPPRREPLPSRRDVYLSPRDDGYSTKDSYSSRDYPSSRDTRDYAPPPRDYTYRDYGH 248
Query: 210 SKSGSSTSSRSASTSKSSSARRSKSSSVS--------RSRSRSRSSSMTRSPP 254
S S SR S R S S S SRS+ TR PP
Sbjct: 249 SSSRDDYPSRGYSDRDGYGRDRDYSDHPSGGSYRDSYESYGNSRSAPPTRGPP 301
Score = 38.1 bits (87), Expect = 0.009
Identities = 38/112 (33%), Positives = 41/112 (36%), Gaps = 9/112 (8%)
Query: 111 GGGYGRRSRSYGRRSRSPRRRHRSRSRGPSCSRSRSRSRYRGSRYSRSPY--SRSPYSRS 168
GG Y SYG +P +RGP S S SRY SR Y SR YS S
Sbjct: 278 GGSYRDSYESYGNSRSAPP------TRGPPPSYGGS-SRYDDYSSSRDGYGGSRDSYSSS 330
Query: 169 RYSRSPYSRSRYRESRYGGSHYSSSGYSNSRYSRYHSSRSHSKSGSSTSSRS 220
R R R G GY R S SSR + G SRS
Sbjct: 331 RSDLYSSGRDRVGRQERGLPPSMERGYPPPRDSYSSSSRGAPRGGGRGGSRS 382
Score = 35.0 bits (79), Expect = 0.074
Identities = 61/183 (33%), Positives = 73/183 (39%), Gaps = 32/183 (17%)
Query: 94 RRDLPRSRQGEPRGRSRGGGYGRRSRSYGRRSRS---PRRRHRSRSRGPSCSRSRSRSRY 150
RRD+ S + + G S Y R R +R P R + R G S SR Y
Sbjct: 202 RRDVYLSPRDD--GYSTKDSYSSRDYPSSRDTRDYAPPPRDYTYRDYG----HSSSRDDY 255
Query: 151 RGSRYSRSPYSRSPYSRSR-YSRSPYSRSRYRES--RYGGSHYS-------SSGYSNSRY 200
YS R Y R R YS P S YR+S YG S + S +SRY
Sbjct: 256 PSRGYS----DRDGYGRDRDYSDHP-SGGSYRDSYESYGNSRSAPPTRGPPPSYGGSSRY 310
Query: 201 SRYHSSRSHSKSGSSTSSRSASTSKSSSARRSKSSSVSRSRSRSRSSSMTRS--PPRVSK 258
Y SSR G S S S+S S S+ R + V R + R SM R PPR S
Sbjct: 311 DDYSSSR--DGYGGSRDSYSSSRSDLYSSGRDR---VGR-QERGLPPSMERGYPPPRDSY 364
Query: 259 RKS 261
S
Sbjct: 365 SSS 367
>gi|224548936 hypothetical protein LOC100170229 [Homo sapiens]
Length = 715
Score = 82.4 bits (202), Expect = 4e-16
Identities = 73/193 (37%), Positives = 90/193 (46%), Gaps = 19/193 (9%)
Query: 94 RRDLPRSRQGEP---RGRSRGGGYGR-RSRSYGRRSRSP-RRRHRSRSRGPS----CSRS 144
R++ RS+ G P R SR + R RS RSRSP + R RSRSR P+ CSRS
Sbjct: 384 RKESGRSQSGSPNKQRDHSRSRSPNKARDRS---RSRSPYKARDRSRSRSPNKARDCSRS 440
Query: 145 RSRSRYRGSRYSRSPYSRSPYSRSRYSRSPYSRSRYRESRYGGSHYSSSGYSNSRYSRYH 204
RS + R SRSP +SRSR RSR R H S R R
Sbjct: 441 RSPYKARDRSRSRSPNKARDHSRSRSPNKARDRSRSRSPSKERDHSQLGSPSKERDHR-- 498
Query: 205 SSRSHSKSGSSTSSRSASTSKSSSARRSKSSSVSRSRSRSRSSSMTRSPPRVSKRKSKSR 264
RS S S +S S+SK RRS+S S R R +SRS + R S+ +S S
Sbjct: 499 --RSRSPSKERQCRQSRSSSKERDHRRSRSPSKERQRRQSRSPNKERDR---SQSRSPSE 553
Query: 265 SRSKRPPKSPEEE 277
R R +SP +E
Sbjct: 554 EREHRQSRSPSKE 566
Score = 78.6 bits (192), Expect = 6e-15
Identities = 70/184 (38%), Positives = 85/184 (46%), Gaps = 20/184 (10%)
Query: 107 GRSRGGGYGRRSRSYGRRSRSPRR-RHRSRSRGPSCSRSRSRSRY----RGSRYSRSPYS 161
GRS+ G ++ R + R SRSP + R RSRSR P +R RSRSR R SRSPY
Sbjct: 388 GRSQSGSPNKQ-RDHSR-SRSPNKARDRSRSRSPYKARDRSRSRSPNKARDCSRSRSPYK 445
Query: 162 RSPYSRSRYSRSPYSRSRYRESRYGGSHYSSSGYSNSRYSRYHSSRSHSKSGSSTSSR-- 219
SRSR SR R + SR R HS+ GS + R
Sbjct: 446 ARDRSRSRSPNKARDHSRSRSP--------NKARDRSRSRSPSKERDHSQLGSPSKERDH 497
Query: 220 --SASTSKSSSARRSKSSSVSRSRSRSRSSSMTRSPPRVSKRKSKSRSRSKRPPKSPEEE 277
S S SK R+S+SSS R RSRS S R R S+ +K R RS+ S E E
Sbjct: 498 RRSRSPSKERQCRQSRSSSKERDHRRSRSPSKERQ-RRQSRSPNKERDRSQSRSPSEERE 556
Query: 278 GQMS 281
+ S
Sbjct: 557 HRQS 560
Score = 75.5 bits (184), Expect = 5e-14
Identities = 64/191 (33%), Positives = 80/191 (41%), Gaps = 11/191 (5%)
Query: 95 RDLPRSRQGEPRGRSRGGGYGRRSRSYGRRSRSPRRRHRSRSRGPSCSRSRSRSRY---- 150
R SR RG R+ + ++R SRSR P+ +R RSRSR
Sbjct: 363 RSHSHSRSSSKERDHRGSSSPRKESGRSQSGSPNKQRDHSRSRSPNKARDRSRSRSPYKA 422
Query: 151 RGSRYSRSPYSRSPYSRSRYSRSPYSRSRYRESRYGGSHYSSSGYSNSRYSRYHSSRSHS 210
R SRSP SRSR RSR R H S + +R SRS S
Sbjct: 423 RDRSRSRSPNKARDCSRSRSPYKARDRSRSRSPNKARDHSRSRSPNKAR----DRSRSRS 478
Query: 211 KSGSSTSSRSASTSKSSSARRSKSSSVSRSRSRSRSSSMTRSPPRVSKRKSKSRSRSKRP 270
S S+ S SK RRS+S S R +SRSSS R R +S S+ R +R
Sbjct: 479 PSKERDHSQLGSPSKERDHRRSRSPSKERQCRQSRSSSKERDHRR---SRSPSKERQRRQ 535
Query: 271 PKSPEEEGQMS 281
+SP +E S
Sbjct: 536 SRSPNKERDRS 546
Score = 73.6 bits (179), Expect = 2e-13
Identities = 73/200 (36%), Positives = 92/200 (46%), Gaps = 23/200 (11%)
Query: 94 RRDLPRSRQ-GEPRGRSRGGG-YGRRSRSYGR---------RSRSP-RRRHRSRSRGPSC 141
+RD RSR + R RSR Y R RS R RSRSP + R RSRSR P+
Sbjct: 398 QRDHSRSRSPNKARDRSRSRSPYKARDRSRSRSPNKARDCSRSRSPYKARDRSRSRSPNK 457
Query: 142 SRSRSRSRYRGSRYSRSPYSRSPYSRSRYSR--SPYSRSRYRESRYGGSHYSSSGYSNSR 199
+R SRSR RS SRSP +S+ SP +R SR S S R
Sbjct: 458 ARDHSRSRSPNKARDRS-RSRSPSKERDHSQLGSPSKERDHRRSR------SPSKERQCR 510
Query: 200 YSRYHS-SRSHSKSGSSTSSRSASTSKSSSARRSKSSSVSRSRSRSRSSSMTRSPPRVSK 258
SR S R H +S S + R S+S + R +S S S S R S + S R +
Sbjct: 511 QSRSSSKERDHRRSRSPSKERQRRQSRSPNKERDRSQSRSPSEEREHRQSRSPSKERDRR 570
Query: 259 R-KSKSRSRSKRPPKSPEEE 277
R +S S+ R +R +S EE
Sbjct: 571 RWRSPSKERERRQSRSSSEE 590
Score = 73.2 bits (178), Expect = 2e-13
Identities = 81/245 (33%), Positives = 106/245 (43%), Gaps = 42/245 (17%)
Query: 72 EAAMDGAELDGRELRVQVARYGRRDLPRSRQGEPRGRSRGGGYGR-----RSRSYGR--- 123
E + E+ R A R S+ PR RSR G R RS S+ R
Sbjct: 254 EKSYSPTEMSSRVKSYNQASTRSRPQSHSQSRSPR-RSRSGSQKRTHSRVRSHSWKRNHS 312
Query: 124 RSRSPRR--------RH---RSRSRGPSCSRSRSRSRYRGSRYSRSPYSRSPYSRSRYSR 172
R+RS R RH RS S+G S ++SR+ R R +SR+P +S SR
Sbjct: 313 RARSRTRKGILSQMGRHSQSRSHSKGKSQNQSRTPRRGRSHNWSRNPSKERSHSHSR--- 369
Query: 173 SPYSRSRYRESRYGGSHYSSSGYSNS---RYSRYHS-----------SRSHSKSGSSTSS 218
S S+ R+ R S SG S S R HS SRS S + S
Sbjct: 370 ---SSSKERDHRGSSSPRKESGRSQSGSPNKQRDHSRSRSPNKARDRSRSRSPYKARDRS 426
Query: 219 RSASTSKSSSARRSKSSSVSRSRSRSRSSSMTRSPPRV-SKRKSKSRSRSKRPPKSPEEE 277
RS S +K+ RS+S +R RSRSRS + R R S K++ RSRS+ P K +
Sbjct: 427 RSRSPNKARDCSRSRSPYKARDRSRSRSPNKARDHSRSRSPNKARDRSRSRSPSKE-RDH 485
Query: 278 GQMSS 282
Q+ S
Sbjct: 486 SQLGS 490
Score = 73.2 bits (178), Expect = 2e-13
Identities = 77/208 (37%), Positives = 91/208 (43%), Gaps = 29/208 (13%)
Query: 92 YGRRDLPRSRQ-GEPRGRSRGGG-YGRRSRSYGR---------RSRSPRR-RHRSRSRGP 139
Y RD RSR + R SR Y R RS R RSRSP + R RSRSR P
Sbjct: 420 YKARDRSRSRSPNKARDCSRSRSPYKARDRSRSRSPNKARDHSRSRSPNKARDRSRSRSP 479
Query: 140 SCSRSRSR----SRYRGSRYSRSPYSRSPYSRSRYS---------RSPYSRSRYRESRYG 186
S R S+ S+ R R SRSP +SR S RSP + R+SR
Sbjct: 480 SKERDHSQLGSPSKERDHRRSRSPSKERQCRQSRSSSKERDHRRSRSPSKERQRRQSRSP 539
Query: 187 GSHYSSSGYSNSRYSRYHSSRSHSKSGSSTSSRSASTSKSSSARRSKSSSVSRSRSRSRS 246
S + R H +S S S R S SK R+S+SSS R SRSRS
Sbjct: 540 NKERDRSQSRSPSEEREHR-QSRSPSKERDRRRWRSPSKERERRQSRSSSEERDHSRSRS 598
Query: 247 SSMTR--SPPRVSKRKSKSRSRSKRPPK 272
+ S PR S K K+ SRS+ P K
Sbjct: 599 PNKQSGYSRPRASS-KEKAHSRSRTPSK 625
Score = 70.1 bits (170), Expect = 2e-12
Identities = 72/210 (34%), Positives = 96/210 (45%), Gaps = 33/210 (15%)
Query: 94 RRDLPRSRQGEPRGRSRGGGYGRRSRSYGR-----RSRSPRR-RHRSRSRGPSCSRSRSR 147
+R+ R+R +G G +SRS+ + +SR+PRR R + SR PS RS S
Sbjct: 308 KRNHSRARSRTRKGILSQMGRHSQSRSHSKGKSQNQSRTPRRGRSHNWSRNPSKERSHSH 367
Query: 148 SR-------YRGSRYSR---------SPYSRSPYSRSRYSRSPYSRSRYRESRYGGSHYS 191
SR +RGS R SP + +SRSR RSR R S Y
Sbjct: 368 SRSSSKERDHRGSSSPRKESGRSQSGSPNKQRDHSRSRSPNKARDRSRSR------SPYK 421
Query: 192 SSGYSNSRYSRY--HSSRSHSKSGSSTSSRSASTSKSSSARRSKSSSVSRSRSRSRSSSM 249
+ S SR SRS S + SRS S +K+ RS+S + +R RSRSRS S
Sbjct: 422 ARDRSRSRSPNKARDCSRSRSPYKARDRSRSRSPNKARDHSRSRSPNKARDRSRSRSPSK 481
Query: 250 TRSPPRVSKRKSKSRSRSKRPPKSPEEEGQ 279
R S+ S S+ R R +SP +E Q
Sbjct: 482 ERDH---SQLGSPSKERDHRRSRSPSKERQ 508
Score = 69.7 bits (169), Expect = 3e-12
Identities = 68/190 (35%), Positives = 88/190 (46%), Gaps = 18/190 (9%)
Query: 95 RDLPRSRQGEPRGRSRGGGYGRRSRSYGRRSRSP-RRRHRSRSRGPSCSRSRSRSRY--- 150
RD RSR + R + R + RRSRSP + R R +SR P+ R RS+SR
Sbjct: 495 RDHRRSRSPSKERQCRQSRSSSKERDH-RRSRSPSKERQRRQSRSPNKERDRSQSRSPSE 553
Query: 151 -RGSRYSRSPYSRSPYSRSRYSRSPYSRSRYRESRYGGSHYSSSGYSNSRYSRYHS--SR 207
R R SRSP S+ R R S S+ RE R S +S SR S SR
Sbjct: 554 EREHRQSRSP------SKERDRRRWRSPSKERERRQSRSSSEERDHSRSRSPNKQSGYSR 607
Query: 208 SHSKSGSSTSSRSASTSKSSSARRSKSSSVSRSRSRS---RSSSMTRSPPRVSKRKSKSR 264
+ S SRS + SK + +S++SS S+S RS RSP R S S++R
Sbjct: 608 PRASSKEKAHSRSRTPSKEGNHSQSRTSSKESDPSQSTVPRSPDWKRSPTRTSS-LSQNR 666
Query: 265 SRSKRPPKSP 274
+ SK SP
Sbjct: 667 TPSKTSSHSP 676
Score = 68.2 bits (165), Expect = 8e-12
Identities = 68/202 (33%), Positives = 94/202 (46%), Gaps = 24/202 (11%)
Query: 88 QVARYGRRDLP-RSRQGEPRGRS-RGGGYGR---RSRSYGR-RSRSPRR-------RHRS 134
+V YG+ +P R + P S R Y + RSR +SRSPRR R S
Sbjct: 241 KVKSYGQMIIPSREKSYSPTEMSSRVKSYNQASTRSRPQSHSQSRSPRRSRSGSQKRTHS 300
Query: 135 RSRGPSCSRSRSRSRYRGSRYSRSPYSRSPYSRSRYSRSPYSRSRYRESRYGGSHYSSSG 194
R R S R+ SR+R R + S R +S+SR S+++ R R G SH S
Sbjct: 301 RVRSHSWKRNHSRARSRTRKGILSQMGR--HSQSRSHSKGKSQNQSRTPRRGRSHNWSRN 358
Query: 195 YSNSRYSRYHSSRSHSKSGSSTSSRSASTSKSSSARRSKSSSVSRSRSRSRSSSMTRSPP 254
S R S SHS+S S S+S + RS+S S ++ R SRS S ++
Sbjct: 359 PSKER------SHSHSRSSSKERDHRGSSSPRKESGRSQSGSPNKQRDHSRSRSPNKARD 412
Query: 255 RVSKR---KSKSRSRSKRPPKS 273
R R K++ RSRS+ P K+
Sbjct: 413 RSRSRSPYKARDRSRSRSPNKA 434
Score = 59.7 bits (143), Expect = 3e-09
Identities = 68/222 (30%), Positives = 92/222 (41%), Gaps = 14/222 (6%)
Query: 65 RRDAQDAEAAMDGAELDGRELRVQVARYGRRDLPRSRQGEPRGRSRGGGYGRRSRSYGRR 124
RR ++ ++ + A GR +R AR G R+ + +G SRG YGR S R
Sbjct: 126 RRGSRSSKRSPSRASTPGR-IRTHGARPGMASRVRTPTSQQKG-SRGKSYGRPRTSNRER 183
Query: 125 SRS-PRRRHRSRSRGPSCSRSRSRSRYRGSRYSRSPYSRSPYSRSRYSRSPYSRSRYRES 183
S S PR + R P S S + + + + S +P S +
Sbjct: 184 SDSQPRNLSKKSYRPPGGSGIGRSSELAVTPSTAKCQTPTGIPSKEKSDNPSPSSSRKVK 243
Query: 184 RYGGSHYSSSGYSNSRYSRYHSSRSHSKSGSSTSSRSASTSKSSSARRSKSSSVSRSRSR 243
YG S S S SSR S + +ST SR S S+S S RRS+S S R+ SR
Sbjct: 244 SYGQMIIPSREKSYSPTEM--SSRVKSYNQASTRSRPQSHSQSRSPRRSRSGSQKRTHSR 301
Query: 244 SRSSSMTRSPPRVSKRKSK---------SRSRSKRPPKSPEE 276
RS S R+ R R K S+SRS KS +
Sbjct: 302 VRSHSWKRNHSRARSRTRKGILSQMGRHSQSRSHSKGKSQNQ 343
Score = 57.4 bits (137), Expect = 1e-08
Identities = 57/181 (31%), Positives = 81/181 (44%), Gaps = 21/181 (11%)
Query: 83 RELRVQVARYGRRDLPRSRQGEPRGRSRGGGYGRRSRSYGR-RSRSPRRRHRSRSRGPSC 141
R+ R + RD RSR + R + R + RS S R HR +SR PS
Sbjct: 507 RQCRQSRSSSKERDHRRSRSPSKERQRRQSRSPNKERDRSQSRSPSEEREHR-QSRSPSK 565
Query: 142 SRSRSR----SRYRGSRYSRSPYSRSPYSRSRYSRSPYSRSRYRESRYGGSHYSSSGYSN 197
R R R S+ R R SRS +SR SRSP +S Y R ++
Sbjct: 566 ERDRRRWRSPSKERERRQSRSSSEERDHSR---SRSPNKQSGYSRPR-----------AS 611
Query: 198 SRYSRYHSSRSHSKSGSSTSSRSAS-TSKSSSARRSKSSSVSRSRSRSRSSSMTRSPPRV 256
S+ + SR+ SK G+ + SR++S S S + +S RS +R+ S S R+P +
Sbjct: 612 SKEKAHSRSRTPSKEGNHSQSRTSSKESDPSQSTVPRSPDWKRSPTRTSSLSQNRTPSKT 671
Query: 257 S 257
S
Sbjct: 672 S 672
Score = 55.1 bits (131), Expect = 7e-08
Identities = 58/215 (26%), Positives = 87/215 (40%), Gaps = 20/215 (9%)
Query: 66 RDAQDAEAAMDGAELDGRELRVQVARYGRRDLPRSRQGEPRGRSRGGGYGRRSRSYGRRS 125
++ Q ++ E D R R RR + R +SR R R +S
Sbjct: 505 KERQCRQSRSSSKERDHRRSRSPSKERQRRQSRSPNKERDRSQSRSPSEEREHR----QS 560
Query: 126 RSP-----RRRHRSRSRGPSCSRSRSRSRYRGSRYSRSPYSRSPYSRSRYS--------- 171
RSP RRR RS S+ +SRS S R SRSP +S YSR R S
Sbjct: 561 RSPSKERDRRRWRSPSKERERRQSRSSSEERDHSRSRSPNKQSGYSRPRASSKEKAHSRS 620
Query: 172 RSPYSRSRYRESRYGGSHYSSSGYSNSRYSRYHSSRSHSKSGSSTSSRSASTSKSSSARR 231
R+P + +SR S + R + RS +++ S + +R+ S + S S
Sbjct: 621 RTPSKEGNHSQSRTSSKESDPSQSTVPRSPDW--KRSPTRTSSLSQNRTPSKTSSHSPST 678
Query: 232 SKSSSVSRSRSRSRSSSMTRSPPRVSKRKSKSRSR 266
S + S+ S++ + T +R S S S+
Sbjct: 679 FPSGGQTLSQDDSQADATTSKATLPGERSSSSSSK 713
Score = 45.8 bits (107), Expect = 4e-05
Identities = 57/198 (28%), Positives = 82/198 (41%), Gaps = 53/198 (26%)
Query: 124 RSRSPRRR-HRSRSRGPSCSRSRSRSRYRGSRYSRSPYSRSPYSRSRYSRS-----PYSR 177
R R+P RR RS R PS + + R R G+R + R+P S+ + SR P +
Sbjct: 120 RGRTPGRRGSRSSKRSPSRASTPGRIRTHGARPGMASRVRTPTSQQKGSRGKSYGRPRTS 179
Query: 178 SRYRESRY------------GGSHYSSSGY---------------------------SNS 198
+R R GGS S S+S
Sbjct: 180 NRERSDSQPRNLSKKSYRPPGGSGIGRSSELAVTPSTAKCQTPTGIPSKEKSDNPSPSSS 239
Query: 199 RYSRYHS-----SRSHSKSGSSTSSRSASTSKSSSARRSKSSSVSRSRSRSRSSSMTRSP 253
R + + SR S S + SSR S +++S+ R +S S SRS RSRS S R+
Sbjct: 240 RKVKSYGQMIIPSREKSYSPTEMSSRVKSYNQASTRSRPQSHSQSRSPRRSRSGSQKRTH 299
Query: 254 PRV---SKRKSKSRSRSK 268
RV S +++ SR+RS+
Sbjct: 300 SRVRSHSWKRNHSRARSR 317
Score = 39.7 bits (91), Expect = 0.003
Identities = 43/161 (26%), Positives = 68/161 (42%), Gaps = 13/161 (8%)
Query: 124 RSRSPRRRHRSRSRGPSCSRSRSRSRYRGSRYSRSPYSRSPYSRSRYSRSPYSRSRYRES 183
RS P + SR+ S S S+S + + R+P +R P SRSR RS+ R
Sbjct: 42 RSLVPTKPATSRNSVMSPSSSKST---KSTSTKRAPSNR-PSSRSRV------RSKARTP 91
Query: 184 RYGGSHYSSSGYSNSRYSRYHSSRSHSKSGSSTSSRSASTSKSSSARRSKSSSVSRSRSR 243
+ +S S + R H R G + R + +SK S +R S + +R
Sbjct: 92 SRVSTDTRTSKASKASDVRCHQRRGTHSRGRTPGRRGSRSSKRSPSRASTPGRIRTHGAR 151
Query: 244 SRSSSMTRSP---PRVSKRKSKSRSRSKRPPKSPEEEGQMS 281
+S R+P + S+ KS R R+ +S + +S
Sbjct: 152 PGMASRVRTPTSQQKGSRGKSYGRPRTSNRERSDSQPRNLS 192
Score = 35.8 bits (81), Expect = 0.043
Identities = 45/178 (25%), Positives = 72/178 (40%), Gaps = 20/178 (11%)
Query: 123 RRSRSPRRRHRSRSRGPSCSRSRSRSRYRGSRYSRSPYSRSPYSRSRYSRS-PYSRSRYR 181
+R+ S R RSR R + + SR + R S+ S++ R R +SR R R
Sbjct: 71 KRAPSNRPSSRSRVRSKARTPSRVSTDTRTSKASKASDVRCHQRRGTHSRGRTPGRRGSR 130
Query: 182 ESRYGGSHYSSSGYSNSRYSR-YHSSRSHSKSGSSTSSRSASTSKSSSARRSKSSSVSRS 240
S+ S S+ G + +R +SR + + SR S + ++ R +S S R+
Sbjct: 131 SSKRSPSRASTPGRIRTHGARPGMASRVRTPTSQQKGSRGKSYGRPRTSNRERSDSQPRN 190
Query: 241 RSR-----------SRSSSMTRSP-------PRVSKRKSKSRSRSKRPPKSPEEEGQM 280
S+ RSS + +P P K KS + S + + GQM
Sbjct: 191 LSKKSYRPPGGSGIGRSSELAVTPSTAKCQTPTGIPSKEKSDNPSPSSSRKVKSYGQM 248
Score = 29.6 bits (65), Expect = 3.1
Identities = 19/59 (32%), Positives = 36/59 (61%), Gaps = 2/59 (3%)
Query: 214 SSTSSRSASTSKSSSARRSKSSSVSRSRSRSRSSSMTRSPPRVSKRKSKSRSRSKRPPK 272
S+T +RS +K +++R S S S S+S ++S+S R+P +S+ RS+++ P +
Sbjct: 37 SATPNRSLVPTKPATSRNSVMSP-SSSKS-TKSTSTKRAPSNRPSSRSRVRSKARTPSR 93
>gi|4502847 cold inducible RNA binding protein [Homo sapiens]
Length = 172
Score = 82.0 bits (201), Expect = 5e-16
Identities = 57/155 (36%), Positives = 76/155 (49%), Gaps = 24/155 (15%)
Query: 16 LKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAM 75
L V L++ T+ SL +VF KYG++ +V + ++ T+ RGF FV F + DA+DA AM
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 76 DGAELDGRELRVQVA--------------RYGRRDLPRSRQGEPRGRSRGGGYGRRSRSY 121
+G +DGR++RV A G R R +G RG SRGGG R Y
Sbjct: 68 NGKSVDGRQIRVDQAGKSSDNRSRGYRGGSAGGRGFFRGGRGRGRGFSRGGG----DRGY 123
Query: 122 GRRSRSPRRRHRSRSRGPSCSRSRSRSRYRGSRYS 156
G R SRS G SR SR + YS
Sbjct: 124 G------GNRFESRSGGYGGSRDYYSSRSQSGGYS 152
>gi|29568103 U1 small nuclear ribonucleoprotein 70 kDa [Homo
sapiens]
Length = 437
Score = 80.1 bits (196), Expect = 2e-15
Identities = 81/300 (27%), Positives = 103/300 (34%), Gaps = 38/300 (12%)
Query: 6 PPPDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDR 65
P D TL V + Y T+ LRR FE YG + +++ + PRG+AF+ +
Sbjct: 95 PNAQGDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHE 154
Query: 66 RDAQDAEAAMDGAELDGRELRVQVARYGR--RDLPRSRQGEPRGRSRGGGYGRRSRSYGR 123
RD A DG ++DGR + V V R GR + R G G +R GG R GR
Sbjct: 155 RDMHSAYKHADGKKIDGRRVLVDVER-GRTVKGWRPRRLGGGLGGTRRGGADVNIRHSGR 213
Query: 124 ---------------------RSRSPRRRHRSRSRGPSCSRSRSRSRYRGSR-------- 154
R R RR RSR R R RSRSR R R
Sbjct: 214 DDTSRYDERPGPSPLPHRDRDRDRERERRERSRERDKERERRRSRSRDRRRRSRSRDKEE 273
Query: 155 YSRSPYSRSPYSRSRYSRSPYSRSRYRESRYGGSHYSSSGYSNSRYSRYHSS------RS 208
RS R R RS SR R R R G + S +
Sbjct: 274 RRRSRERSKDKDRDRKRRSSRSRERARRERERKEELRGGGGDMAEPSEAGDAPPDDGPPG 333
Query: 209 HSKSGSSTSSRSASTSKSSSARRSKSSSVSRSRSRSRSSSMTRSPPRVSKRKSKSRSRSK 268
+ RRS S R R R R R R + + R ++
Sbjct: 334 ELGPDGPDGPEEKGRDRDRERRRSHRSERERRRDRDRDRDRDREHKRGERGSERGRDEAR 393
Score = 28.5 bits (62), Expect = 6.9
Identities = 21/84 (25%), Positives = 33/84 (39%), Gaps = 6/84 (7%)
Query: 186 GGSHYSSSGYSNSRYSRYHSSRSHSKSGSSTSSRSASTSKSSSARRSKSSSVSRSRSRSR 245
GG+ + + R +SR + G S RR +S + R R R
Sbjct: 197 GGTRRGGADVNIRHSGRDDTSRYDERPGPSPLPHRDRDRDRERERRERSRERDKERERRR 256
Query: 246 SSSMTRSPPRVSKRKSKSRSRSKR 269
S S R +R+S+SR + +R
Sbjct: 257 SRSRDR------RRRSRSRDKEER 274
>gi|117938254 BCL2-associated transcription factor 1 isoform 3 [Homo
sapiens]
Length = 747
Score = 79.0 bits (193), Expect = 4e-15
Identities = 73/189 (38%), Positives = 89/189 (47%), Gaps = 19/189 (10%)
Query: 100 SRQGEPRGRSRGGGYGRRSRSYGRRSRSPRRRHRSRSRGPSCSRSRSRSRYRGSRYSRSP 159
SR R +SR RSRS RS S ++R+ SRSR + SRSRSR R YSR
Sbjct: 6 SRSHSSRSKSRSQS-SSRSRS---RSHSRKKRYSSRSRSRTYSRSRSRDR----MYSRD- 56
Query: 160 YSRSPYSRSRYSRSPYSRSRYRESRY--GGSHYSSSGYS---NSRYSRYHSSRSHSKSGS 214
R Y +R R PY Y GG Y GY N R+SR S R
Sbjct: 57 -YRRDYRNNRGMRRPYGYRGRGRGYYQGGGGRYHRGGYRPVWNRRHSR--SPRRGRSRSR 113
Query: 215 STSSRSASTSKS-SSARRSKSSSVSRSRSRSRSSSMTRSPPRVSKRKSKSRSRSKRPPKS 273
S RS S+ +S S +RRS SS S S SRSSS P VSKR+ ++K+
Sbjct: 114 SPKRRSVSSQRSRSRSRRSYRSSRSPRSSSSRSSSPYSKSP-VSKRRGSQEKQTKKAEGE 172
Query: 274 PEEEGQMSS 282
P+EE + S
Sbjct: 173 PQEESPLKS 181
Score = 60.8 bits (146), Expect = 1e-09
Identities = 71/205 (34%), Positives = 88/205 (42%), Gaps = 31/205 (15%)
Query: 106 RGRSRG---GGYGRRSRS------YGRRSRSPRRRHRSRSRGP-----SCSRSRSRSRYR 151
RGR RG GG GR R R SRSPRR RSRSR P S RSRSRSR R
Sbjct: 74 RGRGRGYYQGGGGRYHRGGYRPVWNRRHSRSPRRG-RSRSRSPKRRSVSSQRSRSRSR-R 131
Query: 152 GSRYSRSPYSRSPYSRSRYSRSPYSRSRYRESRY-----GGSHYSSSGYSNSR------- 199
R SRSP S S S S YS+SP S+ R + + G S S S+
Sbjct: 132 SYRSSRSPRSSSSRSSSPYSKSPVSKRRGSQEKQTKKAEGEPQEESPLKSKSQEEPKDTF 191
Query: 200 -YSRYHSSRSHSKSGSSTSSRSASTSKSSSARRSKSSSVSRSRSRSRSSSMTRSP--PRV 256
+ S +KS +++ S ++ RS S + S+SSS + +P V
Sbjct: 192 EHDPSESIDEFNKSSATSGDIWPGLSAYDNSPRSPHSPSPIATPPSQSSSCSDAPMLSTV 251
Query: 257 SKRKSKSRSRSKRPPKSPEEEGQMS 281
K+ S SPE G S
Sbjct: 252 HSAKNTPSQHSHSIQHSPERSGSGS 276
Score = 40.0 bits (92), Expect = 0.002
Identities = 60/222 (27%), Positives = 83/222 (37%), Gaps = 57/222 (25%)
Query: 99 RSRQGEPRGRSRGGGYGRRSRSYGRRSRSPRRRHRSRSRGPSCSRSRSRSRY-------- 150
R + RGRSR RRS S +RSRS RR SR P S SRS S Y
Sbjct: 100 RHSRSPRRGRSRSRSPKRRSVS-SQRSRSRSRRSYRSSRSPRSSSSRSSSPYSKSPVSKR 158
Query: 151 RGSRYSRS------PYSRSPYSR-----------------------------------SR 169
RGS+ ++ P SP S
Sbjct: 159 RGSQEKQTKKAEGEPQEESPLKSKSQEEPKDTFEHDPSESIDEFNKSSATSGDIWPGLSA 218
Query: 170 YS---RSPYSRSRYRESRYGGSHYSSSGYSNSRYSRYHSSRSHSKSGSSTSSRSASTSKS 226
Y RSP+S S S S + ++ +S ++ HS S + RS S S
Sbjct: 219 YDNSPRSPHSPSPIATPPSQSSSCSDAPMLSTVHSAKNTPSQHSHSIQHSPERSGSGSVG 278
Query: 227 SSARR---SKSSSVSRSRSRSRSSSMTRSPPRVSKRKSKSRS 265
+ + R S++S + SR RS + T +P + +S+ RS
Sbjct: 279 NGSSRYSPSQNSPIHHIPSR-RSPAKTIAPQNAPRDESRGRS 319
Score = 30.0 bits (66), Expect = 2.4
Identities = 37/142 (26%), Positives = 49/142 (34%), Gaps = 16/142 (11%)
Query: 114 YGRRSRSYGRRSRSPRRRHRSRSRGPSCSRSRSR--SRYRGSRYSRSPYSRSPYSRSRYS 171
Y + + + R +SP HR PS R +R R + + S
Sbjct: 462 YQKATEEHSTRQKSPEI-HRRIDISPSTLRKHTRLAGEERVFKEENQKGDKKLRCDSADL 520
Query: 172 RSPYSRSRYRESRYGGSHYSSSGYSNSR--------YSRYHSSRSHSKSGSSTSSRSAST 223
R R R S+ G S S SR Y Y S + SK R
Sbjct: 521 RHDIDRRRKERSKERGDSKGSRESSGSRKQEKTPKDYKEYKSYKDDSKH-----KREQDH 575
Query: 224 SKSSSARRSKSSSVSRSRSRSR 245
S+SSS+ S SS SR S+
Sbjct: 576 SRSSSSSASPSSPSSREEKESK 597
>gi|7661958 BCL2-associated transcription factor 1 isoform 1 [Homo
sapiens]
Length = 920
Score = 79.0 bits (193), Expect = 4e-15
Identities = 73/189 (38%), Positives = 89/189 (47%), Gaps = 19/189 (10%)
Query: 100 SRQGEPRGRSRGGGYGRRSRSYGRRSRSPRRRHRSRSRGPSCSRSRSRSRYRGSRYSRSP 159
SR R +SR RSRS RS S ++R+ SRSR + SRSRSR R YSR
Sbjct: 6 SRSHSSRSKSRSQS-SSRSRS---RSHSRKKRYSSRSRSRTYSRSRSRDR----MYSRD- 56
Query: 160 YSRSPYSRSRYSRSPYSRSRYRESRY--GGSHYSSSGYS---NSRYSRYHSSRSHSKSGS 214
R Y +R R PY Y GG Y GY N R+SR S R
Sbjct: 57 -YRRDYRNNRGMRRPYGYRGRGRGYYQGGGGRYHRGGYRPVWNRRHSR--SPRRGRSRSR 113
Query: 215 STSSRSASTSKS-SSARRSKSSSVSRSRSRSRSSSMTRSPPRVSKRKSKSRSRSKRPPKS 273
S RS S+ +S S +RRS SS S S SRSSS P VSKR+ ++K+
Sbjct: 114 SPKRRSVSSQRSRSRSRRSYRSSRSPRSSSSRSSSPYSKSP-VSKRRGSQEKQTKKAEGE 172
Query: 274 PEEEGQMSS 282
P+EE + S
Sbjct: 173 PQEESPLKS 181
Score = 60.8 bits (146), Expect = 1e-09
Identities = 71/205 (34%), Positives = 88/205 (42%), Gaps = 31/205 (15%)
Query: 106 RGRSRG---GGYGRRSRS------YGRRSRSPRRRHRSRSRGP-----SCSRSRSRSRYR 151
RGR RG GG GR R R SRSPRR RSRSR P S RSRSRSR R
Sbjct: 74 RGRGRGYYQGGGGRYHRGGYRPVWNRRHSRSPRRG-RSRSRSPKRRSVSSQRSRSRSR-R 131
Query: 152 GSRYSRSPYSRSPYSRSRYSRSPYSRSRYRESRY-----GGSHYSSSGYSNSR------- 199
R SRSP S S S S YS+SP S+ R + + G S S S+
Sbjct: 132 SYRSSRSPRSSSSRSSSPYSKSPVSKRRGSQEKQTKKAEGEPQEESPLKSKSQEEPKDTF 191
Query: 200 -YSRYHSSRSHSKSGSSTSSRSASTSKSSSARRSKSSSVSRSRSRSRSSSMTRSP--PRV 256
+ S +KS +++ S ++ RS S + S+SSS + +P V
Sbjct: 192 EHDPSESIDEFNKSSATSGDIWPGLSAYDNSPRSPHSPSPIATPPSQSSSCSDAPMLSTV 251
Query: 257 SKRKSKSRSRSKRPPKSPEEEGQMS 281
K+ S SPE G S
Sbjct: 252 HSAKNTPSQHSHSIQHSPERSGSGS 276
Score = 40.0 bits (92), Expect = 0.002
Identities = 60/222 (27%), Positives = 83/222 (37%), Gaps = 57/222 (25%)
Query: 99 RSRQGEPRGRSRGGGYGRRSRSYGRRSRSPRRRHRSRSRGPSCSRSRSRSRY-------- 150
R + RGRSR RRS S +RSRS RR SR P S SRS S Y
Sbjct: 100 RHSRSPRRGRSRSRSPKRRSVS-SQRSRSRSRRSYRSSRSPRSSSSRSSSPYSKSPVSKR 158
Query: 151 RGSRYSRS------PYSRSPYSR-----------------------------------SR 169
RGS+ ++ P SP S
Sbjct: 159 RGSQEKQTKKAEGEPQEESPLKSKSQEEPKDTFEHDPSESIDEFNKSSATSGDIWPGLSA 218
Query: 170 YS---RSPYSRSRYRESRYGGSHYSSSGYSNSRYSRYHSSRSHSKSGSSTSSRSASTSKS 226
Y RSP+S S S S + ++ +S ++ HS S + RS S S
Sbjct: 219 YDNSPRSPHSPSPIATPPSQSSSCSDAPMLSTVHSAKNTPSQHSHSIQHSPERSGSGSVG 278
Query: 227 SSARR---SKSSSVSRSRSRSRSSSMTRSPPRVSKRKSKSRS 265
+ + R S++S + SR RS + T +P + +S+ RS
Sbjct: 279 NGSSRYSPSQNSPIHHIPSR-RSPAKTIAPQNAPRDESRGRS 319
Score = 30.0 bits (66), Expect = 2.4
Identities = 37/142 (26%), Positives = 49/142 (34%), Gaps = 16/142 (11%)
Query: 114 YGRRSRSYGRRSRSPRRRHRSRSRGPSCSRSRSR--SRYRGSRYSRSPYSRSPYSRSRYS 171
Y + + + R +SP HR PS R +R R + + S
Sbjct: 635 YQKATEEHSTRQKSPEI-HRRIDISPSTLRKHTRLAGEERVFKEENQKGDKKLRCDSADL 693
Query: 172 RSPYSRSRYRESRYGGSHYSSSGYSNSR--------YSRYHSSRSHSKSGSSTSSRSAST 223
R R R S+ G S S SR Y Y S + SK R
Sbjct: 694 RHDIDRRRKERSKERGDSKGSRESSGSRKQEKTPKDYKEYKSYKDDSKH-----KREQDH 748
Query: 224 SKSSSARRSKSSSVSRSRSRSR 245
S+SSS+ S SS SR S+
Sbjct: 749 SRSSSSSASPSSPSSREEKESK 770
>gi|21040326 SON DNA-binding protein isoform F [Homo sapiens]
Length = 2426
Score = 77.8 bits (190), Expect = 1e-14
Identities = 73/182 (40%), Positives = 93/182 (51%), Gaps = 16/182 (8%)
Query: 95 RDLPRSRQGEPRGRSRGGGYGRRSRSYGRRSRSPRRRHRSRSRGPSCSRSRSRSRYRGSR 154
R RSR+ RSR GRRS S +R RSP+ HRS+SR R R RS R +R
Sbjct: 1862 RSRSRSRRRRRSSRSRSKSRGRRSVSKEKRKRSPK--HRSKSR----ERKRKRSSSRDNR 1915
Query: 155 YSRSPYSRSPYSRSRYSRSPYSRSRYRESRYGGSHYSSSGYSNSRYSRYHSSRSHSKSGS 214
+ SR+P RSR S +P SR R SR G S S S SR SR S RS + S
Sbjct: 1916 KTVRARSRTPSRRSR-SHTP---SRRRRSRSVGRRRSFS-ISPSRRSRTPSRRSRTPSRR 1970
Query: 215 STS----SRSASTSKSSSARRSKS-SSVSRSRSRSRSSSMTRSPPRVSKRKSKSRSRSKR 269
S + SR+ S + +RRS++ S RSRS R S + SP R+ + ++ R R R
Sbjct: 1971 SRTPSRRSRTPSRRSRTPSRRSRTPSRRRRSRSVVRRRSFSISPVRLRRSRTPLRRRFSR 2030
Query: 270 PP 271
P
Sbjct: 2031 SP 2032
Score = 73.6 bits (179), Expect = 2e-13
Identities = 62/176 (35%), Positives = 83/176 (47%), Gaps = 18/176 (10%)
Query: 99 RSRQGEPRGRSRGGGYGRRSRSYGRRSRSPRRRHRSRSRGPSCSRSRSRSRYRGSRYSRS 158
RS+ E + R R SRS R+ S + HRS++R SRSRSR R R SR
Sbjct: 1828 RSKSSEHKSRKRTS----ESRSRARKRSSKSKSHRSQTR----SRSRSRRRRRSSRSRSK 1879
Query: 159 PYSRSPYSRSRYSRSPYSRSRYRESRYGGSHYSSSGYSNSRYSRYHSSRSHSKSGSSTSS 218
R S+ + RSP RS+ RE + SS N + R S +S S T S
Sbjct: 1880 SRGRRSVSKEKRKRSPKHRSKSRERK----RKRSSSRDNRKTVRARSRTPSRRSRSHTPS 1935
Query: 219 RSASTSKSSSARRSKSSSVSRSRSRSRSSSMTRSPPRVSK---RKSKSRSRSKRPP 271
R +S S R +S S+S SR S +R+P R S+ R+S++ SR R P
Sbjct: 1936 R---RRRSRSVGRRRSFSISPSRRSRTPSRRSRTPSRRSRTPSRRSRTPSRRSRTP 1988
Score = 65.5 bits (158), Expect = 5e-11
Identities = 62/173 (35%), Positives = 79/173 (45%), Gaps = 14/173 (8%)
Query: 99 RSRQGEPRGRSRGGGYGRRSRSYGRRSRSPRRRHRSRSRGPSCSRSRSRSRYRGSRYSRS 158
R R E R R+R +S RSRS RR R SR SRS+SR R S+ R
Sbjct: 1837 RKRTSESRSRARKRSSKSKSHRSQTRSRSRSRRRRRSSR----SRSKSRGRRSVSKEKR- 1891
Query: 159 PYSRSPYSRSRYSRSPYSRSRYRESRYGGSHYSSSGYSNSRYSRYHSSRSHSKSGSSTSS 218
RSP RS+ RS R++R + + SR SR H+ +S S
Sbjct: 1892 --KRSPKHRSKSRERKRKRSSSRDNR---KTVRARSRTPSRRSRSHTPSRRRRSRSVGRR 1946
Query: 219 RSASTSKSSSARRSKSSSVSRSRSRSRSSSMTRSPPRVSKRKSKSRSRSKRPP 271
RS S S S RRS++ S RSR+ SR S R R+S++ SR R P
Sbjct: 1947 RSFSISPS---RRSRTPS-RRSRTPSRRSRTPSRRSRTPSRRSRTPSRRSRTP 1995
Score = 54.7 bits (130), Expect = 9e-08
Identities = 58/168 (34%), Positives = 75/168 (44%), Gaps = 39/168 (23%)
Query: 106 RGRSRGGGYGRRSRSYGRRSRSPRRR---HRSRSRGPSCSRSRSRSRYRGSRYSRSPYSR 162
+ ++R G + R RSRS R + H+SR R S SRSR+R R S+ S+
Sbjct: 1805 KNKNRDKGEKEKKRDSSLRSRSKRSKSSEHKSRKR---TSESRSRARKRSSK------SK 1855
Query: 163 SPYSRSRYSRSPYSRSRYRESRYGGSHYSSSGYSNSRYSRYHSSRSHSKSGSSTSSRSAS 222
S S++R SRSR R R SSRS SKS S S
Sbjct: 1856 SHRSQTR------SRSRSRRRR-------------------RSSRSRSKS-RGRRSVSKE 1889
Query: 223 TSKSSSARRSKSSSVSRSRSRSRSSSMT-RSPPRVSKRKSKSRSRSKR 269
K S RSKS R RS SR + T R+ R R+S+S + S+R
Sbjct: 1890 KRKRSPKHRSKSRERKRKRSSSRDNRKTVRARSRTPSRRSRSHTPSRR 1937
Score = 51.6 bits (122), Expect = 8e-07
Identities = 53/172 (30%), Positives = 77/172 (44%), Gaps = 17/172 (9%)
Query: 116 RRSRSYGRRSRSPRRRHRSRSRGPSCSRSRSRSRYRGSRYSRSPYSRSPYSRSRYSRSPY 175
+++++ + + +R RSR S +SR R S RS S+S S++
Sbjct: 1804 KKNKNRDKGEKEKKRDSSLRSRSKRSKSSEHKSRKRTSESRSRARKRSSKSKSHRSQT-R 1862
Query: 176 SRSRYRESRYGGSHYSSS--GYSNSRYSRYHSSRSHSKSGSSTSSRSASTSKSSS----- 228
SRSR R R S S S S+ R S + SKS RS+S +
Sbjct: 1863 SRSRSRRRRRSSRSRSKSRGRRSVSKEKRKRSPKHRSKSRERKRKRSSSRDNRKTVRARS 1922
Query: 229 ---ARRSKSSSVS---RSRSRSRSSSMTRSPPRVSK---RKSKSRSRSKRPP 271
+RRS+S + S RSRS R S + SP R S+ R+S++ SR R P
Sbjct: 1923 RTPSRRSRSHTPSRRRRSRSVGRRRSFSISPSRRSRTPSRRSRTPSRRSRTP 1974
Score = 50.4 bits (119), Expect = 2e-06
Identities = 38/97 (39%), Positives = 49/97 (50%), Gaps = 8/97 (8%)
Query: 177 RSRYRESRYGGSHYSSSGYSNSRYSRYHSSRSHSKSGSSTSSRSASTSKSSSARRSKSSS 236
RSR + S+ H S S SR SR+ +S S S RS + S+S S RR +SS
Sbjct: 1823 RSRSKRSK-SSEHKSRKRTSESR------SRARKRSSKSKSHRSQTRSRSRSRRRRRSSR 1875
Query: 237 VSRSRSRSRSSSMTRSPPRVSKRKSKSRSRSKRPPKS 273
SRS+SR R S R K +SKSR R ++ S
Sbjct: 1876 -SRSKSRGRRSVSKEKRKRSPKHRSKSRERKRKRSSS 1911
Score = 50.4 bits (119), Expect = 2e-06
Identities = 61/178 (34%), Positives = 72/178 (40%), Gaps = 41/178 (23%)
Query: 83 RELRVQVARYGRRDLPRSRQGEPRGRSRGGGYGRR---SRSYGRRSRSPRRRHRSRSRGP 139
R+ R V R RSR P R R GRR S S RRSR+P RR R+ SR
Sbjct: 1912 RDNRKTVRARSRTPSRRSRSHTPSRRRRSRSVGRRRSFSISPSRRSRTPSRRSRTPSRR- 1970
Query: 140 SCSRSRSRSRYRGSRYSRSPYSRSPYSRSRYSRSPYSRSRYRESRYGGSHYSSSGYSNSR 199
SR+ SR SR SR+P SR SR+P
Sbjct: 1971 --SRTPSRRSRTPSRRSRTP--------SRRSRTP------------------------- 1995
Query: 200 YSRYHSSRSHSKSGSSTSSRSASTSKSSSARRSKSSSVSRSRSRSRSSSMTRSPPRVS 257
SR SRS + S + S + RR S S R R RSRSS RSP R++
Sbjct: 1996 -SRRRRSRSVVRRRSFSISPVRLRRSRTPLRRRFSRSPIR-RKRSRSSERGRSPKRLT 2051
Score = 49.7 bits (117), Expect = 3e-06
Identities = 46/113 (40%), Positives = 53/113 (46%), Gaps = 16/113 (14%)
Query: 82 GRELRVQVARYGRRDLPRSRQGEPRGRSRGGGYGRRSRSYGRRSRSPRRRH--RSRSRGP 139
GR ++ R P R P RSR RRSR+ RRSR+P RR SR
Sbjct: 1944 GRRRSFSISPSRRSRTPSRRSRTPSRRSRTPS--RRSRTPSRRSRTPSRRSRTPSR---- 1997
Query: 140 SCSRSRSRSRYRGSRYSRSPY----SRSPYSRSRYSRSPYSRSRYRESRYGGS 188
R RSRS R +S SP SR+P R R+SRSP R R R S G S
Sbjct: 1998 ---RRRSRSVVRRRSFSISPVRLRRSRTPL-RRRFSRSPIRRKRSRSSERGRS 2046
Score = 48.5 bits (114), Expect = 6e-06
Identities = 40/113 (35%), Positives = 49/113 (43%), Gaps = 11/113 (9%)
Query: 171 SRSPYSRSRYRESRYGGSHYSSSGYSNSRYSRYHSSRSHSKSGSSTSSRSASTSKSSSAR 230
SRS S+S +SR S S S S+ H S++ S+S S RS+ + S R
Sbjct: 1824 SRSKRSKSSEHKSRKRTSESRSRARKRSSKSKSHRSQTRSRSRSRRRRRSSRSRSKSRGR 1883
Query: 231 RS----------KSSSVSRSRSRSRSSSM-TRSPPRVSKRKSKSRSRSKRPPK 272
RS K S SR R R RSSS R R R RSRS P +
Sbjct: 1884 RSVSKEKRKRSPKHRSKSRERKRKRSSSRDNRKTVRARSRTPSRRSRSHTPSR 1936
Score = 44.3 bits (103), Expect = 1e-04
Identities = 43/167 (25%), Positives = 68/167 (40%), Gaps = 20/167 (11%)
Query: 133 RSRSRGPSCSRSRSRSRYRGSRYSRSPYSRSPYSRSRYS---------RSPYSRSRYRES 183
R+ GP + R R S S R+ S S + + +S+ ++
Sbjct: 1749 RAGIEGPLLASDVGRDRSAASPVVSSMPERASESSSEEKDDYEIFVKVKDTHEKSKKNKN 1808
Query: 184 RYGGSHYSSSGYSNSRYSRYHSSRSHSKSGSSTSSRSASTSKSSSARRSKSSSVSRSRSR 243
R G S S+ S H ++ SRS + +SS ++ +S + SRSRSR
Sbjct: 1809 RDKGEKEKKRDSSLRSRSKRSKSSEHKSRKRTSESRSRARKRSSKSKSHRSQTRSRSRSR 1868
Query: 244 -----SRSSSMTRSPPRVSKRKSK------SRSRSKRPPKSPEEEGQ 279
SRS S +R VSK K K S+SR ++ +S + +
Sbjct: 1869 RRRRSSRSRSKSRGRRSVSKEKRKRSPKHRSKSRERKRKRSSSRDNR 1915
>gi|21040314 SON DNA-binding protein isoform B [Homo sapiens]
Length = 2303
Score = 77.8 bits (190), Expect = 1e-14
Identities = 73/182 (40%), Positives = 93/182 (51%), Gaps = 16/182 (8%)
Query: 95 RDLPRSRQGEPRGRSRGGGYGRRSRSYGRRSRSPRRRHRSRSRGPSCSRSRSRSRYRGSR 154
R RSR+ RSR GRRS S +R RSP+ HRS+SR R R RS R +R
Sbjct: 1862 RSRSRSRRRRRSSRSRSKSRGRRSVSKEKRKRSPK--HRSKSR----ERKRKRSSSRDNR 1915
Query: 155 YSRSPYSRSPYSRSRYSRSPYSRSRYRESRYGGSHYSSSGYSNSRYSRYHSSRSHSKSGS 214
+ SR+P RSR S +P SR R SR G S S S SR SR S RS + S
Sbjct: 1916 KTVRARSRTPSRRSR-SHTP---SRRRRSRSVGRRRSFS-ISPSRRSRTPSRRSRTPSRR 1970
Query: 215 STS----SRSASTSKSSSARRSKS-SSVSRSRSRSRSSSMTRSPPRVSKRKSKSRSRSKR 269
S + SR+ S + +RRS++ S RSRS R S + SP R+ + ++ R R R
Sbjct: 1971 SRTPSRRSRTPSRRSRTPSRRSRTPSRRRRSRSVVRRRSFSISPVRLRRSRTPLRRRFSR 2030
Query: 270 PP 271
P
Sbjct: 2031 SP 2032
Score = 73.6 bits (179), Expect = 2e-13
Identities = 62/176 (35%), Positives = 83/176 (47%), Gaps = 18/176 (10%)
Query: 99 RSRQGEPRGRSRGGGYGRRSRSYGRRSRSPRRRHRSRSRGPSCSRSRSRSRYRGSRYSRS 158
RS+ E + R R SRS R+ S + HRS++R SRSRSR R R SR
Sbjct: 1828 RSKSSEHKSRKRTS----ESRSRARKRSSKSKSHRSQTR----SRSRSRRRRRSSRSRSK 1879
Query: 159 PYSRSPYSRSRYSRSPYSRSRYRESRYGGSHYSSSGYSNSRYSRYHSSRSHSKSGSSTSS 218
R S+ + RSP RS+ RE + SS N + R S +S S T S
Sbjct: 1880 SRGRRSVSKEKRKRSPKHRSKSRERK----RKRSSSRDNRKTVRARSRTPSRRSRSHTPS 1935
Query: 219 RSASTSKSSSARRSKSSSVSRSRSRSRSSSMTRSPPRVSK---RKSKSRSRSKRPP 271
R +S S R +S S+S SR S +R+P R S+ R+S++ SR R P
Sbjct: 1936 R---RRRSRSVGRRRSFSISPSRRSRTPSRRSRTPSRRSRTPSRRSRTPSRRSRTP 1988
Score = 65.5 bits (158), Expect = 5e-11
Identities = 62/173 (35%), Positives = 79/173 (45%), Gaps = 14/173 (8%)
Query: 99 RSRQGEPRGRSRGGGYGRRSRSYGRRSRSPRRRHRSRSRGPSCSRSRSRSRYRGSRYSRS 158
R R E R R+R +S RSRS RR R SR SRS+SR R S+ R
Sbjct: 1837 RKRTSESRSRARKRSSKSKSHRSQTRSRSRSRRRRRSSR----SRSKSRGRRSVSKEKR- 1891
Query: 159 PYSRSPYSRSRYSRSPYSRSRYRESRYGGSHYSSSGYSNSRYSRYHSSRSHSKSGSSTSS 218
RSP RS+ RS R++R + + SR SR H+ +S S
Sbjct: 1892 --KRSPKHRSKSRERKRKRSSSRDNR---KTVRARSRTPSRRSRSHTPSRRRRSRSVGRR 1946
Query: 219 RSASTSKSSSARRSKSSSVSRSRSRSRSSSMTRSPPRVSKRKSKSRSRSKRPP 271
RS S S S RRS++ S RSR+ SR S R R+S++ SR R P
Sbjct: 1947 RSFSISPS---RRSRTPS-RRSRTPSRRSRTPSRRSRTPSRRSRTPSRRSRTP 1995
Score = 54.7 bits (130), Expect = 9e-08
Identities = 58/168 (34%), Positives = 75/168 (44%), Gaps = 39/168 (23%)
Query: 106 RGRSRGGGYGRRSRSYGRRSRSPRRR---HRSRSRGPSCSRSRSRSRYRGSRYSRSPYSR 162
+ ++R G + R RSRS R + H+SR R S SRSR+R R S+ S+
Sbjct: 1805 KNKNRDKGEKEKKRDSSLRSRSKRSKSSEHKSRKR---TSESRSRARKRSSK------SK 1855
Query: 163 SPYSRSRYSRSPYSRSRYRESRYGGSHYSSSGYSNSRYSRYHSSRSHSKSGSSTSSRSAS 222
S S++R SRSR R R SSRS SKS S S
Sbjct: 1856 SHRSQTR------SRSRSRRRR-------------------RSSRSRSKS-RGRRSVSKE 1889
Query: 223 TSKSSSARRSKSSSVSRSRSRSRSSSMT-RSPPRVSKRKSKSRSRSKR 269
K S RSKS R RS SR + T R+ R R+S+S + S+R
Sbjct: 1890 KRKRSPKHRSKSRERKRKRSSSRDNRKTVRARSRTPSRRSRSHTPSRR 1937
Score = 51.6 bits (122), Expect = 8e-07
Identities = 53/172 (30%), Positives = 77/172 (44%), Gaps = 17/172 (9%)
Query: 116 RRSRSYGRRSRSPRRRHRSRSRGPSCSRSRSRSRYRGSRYSRSPYSRSPYSRSRYSRSPY 175
+++++ + + +R RSR S +SR R S RS S+S S++
Sbjct: 1804 KKNKNRDKGEKEKKRDSSLRSRSKRSKSSEHKSRKRTSESRSRARKRSSKSKSHRSQT-R 1862
Query: 176 SRSRYRESRYGGSHYSSS--GYSNSRYSRYHSSRSHSKSGSSTSSRSASTSKSSS----- 228
SRSR R R S S S S+ R S + SKS RS+S +
Sbjct: 1863 SRSRSRRRRRSSRSRSKSRGRRSVSKEKRKRSPKHRSKSRERKRKRSSSRDNRKTVRARS 1922
Query: 229 ---ARRSKSSSVS---RSRSRSRSSSMTRSPPRVSK---RKSKSRSRSKRPP 271
+RRS+S + S RSRS R S + SP R S+ R+S++ SR R P
Sbjct: 1923 RTPSRRSRSHTPSRRRRSRSVGRRRSFSISPSRRSRTPSRRSRTPSRRSRTP 1974
Score = 50.4 bits (119), Expect = 2e-06
Identities = 38/97 (39%), Positives = 49/97 (50%), Gaps = 8/97 (8%)
Query: 177 RSRYRESRYGGSHYSSSGYSNSRYSRYHSSRSHSKSGSSTSSRSASTSKSSSARRSKSSS 236
RSR + S+ H S S SR SR+ +S S S RS + S+S S RR +SS
Sbjct: 1823 RSRSKRSK-SSEHKSRKRTSESR------SRARKRSSKSKSHRSQTRSRSRSRRRRRSSR 1875
Query: 237 VSRSRSRSRSSSMTRSPPRVSKRKSKSRSRSKRPPKS 273
SRS+SR R S R K +SKSR R ++ S
Sbjct: 1876 -SRSKSRGRRSVSKEKRKRSPKHRSKSRERKRKRSSS 1911
Score = 50.4 bits (119), Expect = 2e-06
Identities = 61/178 (34%), Positives = 72/178 (40%), Gaps = 41/178 (23%)
Query: 83 RELRVQVARYGRRDLPRSRQGEPRGRSRGGGYGRR---SRSYGRRSRSPRRRHRSRSRGP 139
R+ R V R RSR P R R GRR S S RRSR+P RR R+ SR
Sbjct: 1912 RDNRKTVRARSRTPSRRSRSHTPSRRRRSRSVGRRRSFSISPSRRSRTPSRRSRTPSRR- 1970
Query: 140 SCSRSRSRSRYRGSRYSRSPYSRSPYSRSRYSRSPYSRSRYRESRYGGSHYSSSGYSNSR 199
SR+ SR SR SR+P SR SR+P
Sbjct: 1971 --SRTPSRRSRTPSRRSRTP--------SRRSRTP------------------------- 1995
Query: 200 YSRYHSSRSHSKSGSSTSSRSASTSKSSSARRSKSSSVSRSRSRSRSSSMTRSPPRVS 257
SR SRS + S + S + RR S S R R RSRSS RSP R++
Sbjct: 1996 -SRRRRSRSVVRRRSFSISPVRLRRSRTPLRRRFSRSPIR-RKRSRSSERGRSPKRLT 2051
Score = 49.7 bits (117), Expect = 3e-06
Identities = 46/113 (40%), Positives = 53/113 (46%), Gaps = 16/113 (14%)
Query: 82 GRELRVQVARYGRRDLPRSRQGEPRGRSRGGGYGRRSRSYGRRSRSPRRRH--RSRSRGP 139
GR ++ R P R P RSR RRSR+ RRSR+P RR SR
Sbjct: 1944 GRRRSFSISPSRRSRTPSRRSRTPSRRSRTPS--RRSRTPSRRSRTPSRRSRTPSR---- 1997
Query: 140 SCSRSRSRSRYRGSRYSRSPY----SRSPYSRSRYSRSPYSRSRYRESRYGGS 188
R RSRS R +S SP SR+P R R+SRSP R R R S G S
Sbjct: 1998 ---RRRSRSVVRRRSFSISPVRLRRSRTPL-RRRFSRSPIRRKRSRSSERGRS 2046
Score = 48.5 bits (114), Expect = 6e-06
Identities = 40/113 (35%), Positives = 49/113 (43%), Gaps = 11/113 (9%)
Query: 171 SRSPYSRSRYRESRYGGSHYSSSGYSNSRYSRYHSSRSHSKSGSSTSSRSASTSKSSSAR 230
SRS S+S +SR S S S S+ H S++ S+S S RS+ + S R
Sbjct: 1824 SRSKRSKSSEHKSRKRTSESRSRARKRSSKSKSHRSQTRSRSRSRRRRRSSRSRSKSRGR 1883
Query: 231 RS----------KSSSVSRSRSRSRSSSM-TRSPPRVSKRKSKSRSRSKRPPK 272
RS K S SR R R RSSS R R R RSRS P +
Sbjct: 1884 RSVSKEKRKRSPKHRSKSRERKRKRSSSRDNRKTVRARSRTPSRRSRSHTPSR 1936
Score = 44.3 bits (103), Expect = 1e-04
Identities = 43/167 (25%), Positives = 68/167 (40%), Gaps = 20/167 (11%)
Query: 133 RSRSRGPSCSRSRSRSRYRGSRYSRSPYSRSPYSRSRYS---------RSPYSRSRYRES 183
R+ GP + R R S S R+ S S + + +S+ ++
Sbjct: 1749 RAGIEGPLLASDVGRDRSAASPVVSSMPERASESSSEEKDDYEIFVKVKDTHEKSKKNKN 1808
Query: 184 RYGGSHYSSSGYSNSRYSRYHSSRSHSKSGSSTSSRSASTSKSSSARRSKSSSVSRSRSR 243
R G S S+ S H ++ SRS + +SS ++ +S + SRSRSR
Sbjct: 1809 RDKGEKEKKRDSSLRSRSKRSKSSEHKSRKRTSESRSRARKRSSKSKSHRSQTRSRSRSR 1868
Query: 244 -----SRSSSMTRSPPRVSKRKSK------SRSRSKRPPKSPEEEGQ 279
SRS S +R VSK K K S+SR ++ +S + +
Sbjct: 1869 RRRRSSRSRSKSRGRRSVSKEKRKRSPKHRSKSRERKRKRSSSRDNR 1915
>gi|169218320 PREDICTED: similar to BCL2-associated transcription
factor 1 isoform 2 [Homo sapiens]
Length = 869
Score = 75.5 bits (184), Expect = 5e-14
Identities = 70/180 (38%), Positives = 82/180 (45%), Gaps = 24/180 (13%)
Query: 124 RSRSPRRRHRSRSRGPSCSRSRSRSRYRGSRY-SRS-PYSRS-------------PYSRS 168
RS S RS+SR S SRSRSRS R RY SRS YSRS Y +
Sbjct: 3 RSNSRSHSSRSKSRSQSSSRSRSRSHSRKKRYRSRSRTYSRSRSRDRMYSRDYRRDYRNN 62
Query: 169 RYSRSPYSRSRYRESRY--GGSHYSSSGYS---NSRYSRYHSSRSHSKSGSSTSSRSAST 223
R R PY Y GG Y GY N R+SR S R S RS S+
Sbjct: 63 RAMRRPYGYRGRGRGYYQGGGGRYHRGGYRPVWNRRHSR--SPRRGRSRSRSPKRRSVSS 120
Query: 224 SKS-SSARRSKSSSVSRSRSRSRSSSMTRSPPRVSKRKSKSRSRSKRPPKSPEEEGQMSS 282
+S S +RRS SS S S SRSSS P VSKR+ ++K+ P+EE + S
Sbjct: 121 QRSRSRSRRSYRSSRSPRSSSSRSSSPYSKSP-VSKRRGSQEKQTKKAEGEPQEESPLKS 179
Score = 62.4 bits (150), Expect = 4e-10
Identities = 79/251 (31%), Positives = 104/251 (41%), Gaps = 23/251 (9%)
Query: 50 HTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVARYGRRDLPRSRQGEPRGRS 109
H++ R + R + R ++D + D D R R YG R R GR
Sbjct: 28 HSRKKRYRSRSRTYSRSRSRDRMYSRDYRR-DYRNNRAMRRPYGYRGRGRGYYQGGGGRY 86
Query: 110 RGGGYGRRSRSYGRRSRSPRRRHRSRSRGP-----SCSRSRSRSR--YRGSRYSRSPYSR 162
GGY R R SRSPRR RSRSR P S RSRSRSR YR SR RS SR
Sbjct: 87 HRGGY--RPVWNRRHSRSPRRG-RSRSRSPKRRSVSSQRSRSRSRRSYRSSRSPRSSSSR 143
Query: 163 S--PYSRSRYSRSPYSRSRYRESRYGGSHYSSSGYSNSR--------YSRYHSSRSHSKS 212
S PYS+S S+ S+ + + G S S S+ + S +KS
Sbjct: 144 SSSPYSKSPVSKRRGSQEKQTKKAEGEPQEESPLKSKSQEEPKDTFEHDPSESIDEFNKS 203
Query: 213 GSSTSSRSASTSKSSSARRSKSSSVSRSRSRSRSSSMTRSP--PRVSKRKSKSRSRSKRP 270
+++ S ++ RS S + S+SSS + +P V K+ S
Sbjct: 204 SATSGDIWPGLSAYDNSPRSPHSPSPIATPPSQSSSCSDAPMLSTVHSAKNTPSQHSHSI 263
Query: 271 PKSPEEEGQMS 281
SPE G S
Sbjct: 264 QHSPERSGSGS 274
Score = 40.0 bits (92), Expect = 0.002
Identities = 60/222 (27%), Positives = 83/222 (37%), Gaps = 57/222 (25%)
Query: 99 RSRQGEPRGRSRGGGYGRRSRSYGRRSRSPRRRHRSRSRGPSCSRSRSRSRY-------- 150
R + RGRSR RRS S +RSRS RR SR P S SRS S Y
Sbjct: 98 RHSRSPRRGRSRSRSPKRRSVS-SQRSRSRSRRSYRSSRSPRSSSSRSSSPYSKSPVSKR 156
Query: 151 RGSRYSRS------PYSRSPYSR-----------------------------------SR 169
RGS+ ++ P SP S
Sbjct: 157 RGSQEKQTKKAEGEPQEESPLKSKSQEEPKDTFEHDPSESIDEFNKSSATSGDIWPGLSA 216
Query: 170 YS---RSPYSRSRYRESRYGGSHYSSSGYSNSRYSRYHSSRSHSKSGSSTSSRSASTSKS 226
Y RSP+S S S S + ++ +S ++ HS S + RS S S
Sbjct: 217 YDNSPRSPHSPSPIATPPSQSSSCSDAPMLSTVHSAKNTPSQHSHSIQHSPERSGSGSVG 276
Query: 227 SSARR---SKSSSVSRSRSRSRSSSMTRSPPRVSKRKSKSRS 265
+ + R S++S + SR RS + T +P + +S+ RS
Sbjct: 277 NGSSRYSPSQNSPIHHIPSR-RSPAKTIAPQNAPRDESRGRS 317
>gi|42741684 zinc finger protein 265 isoform 1 [Homo sapiens]
Length = 330
Score = 75.5 bits (184), Expect = 5e-14
Identities = 62/133 (46%), Positives = 69/133 (51%), Gaps = 5/133 (3%)
Query: 116 RRSRSYGRRSRSPRRRHRSRSRGPSCSRSRSRSRYRGSRYSRSPYSRSPYSRSRYSRSPY 175
RRSRS +SRS R SRS PS SRSRSRSR R S S+S S RSR SR
Sbjct: 200 RRSRS---KSRSSHSRSSSRSSSPSSSRSRSRSRSRSSSSSQSRSRSSSRERSR-SRGSK 255
Query: 176 SRSRYRESRYGGSHYSSSGYSNSRYSRYHSSRSHSKSGSSTSSRSASTSKSSSARRSKSS 235
SRS R R S S S+S + RS S+S SS + T S RR +SS
Sbjct: 256 SRSSSRSHRGSSSPRKRSYSSSSSSPERNRKRSRSRSSSSGDRKKRRTRSRSPERRHRSS 315
Query: 236 SVSRSRSRSRSSS 248
S S S S SRSSS
Sbjct: 316 SGS-SHSGSRSSS 327
Score = 63.9 bits (154), Expect = 1e-10
Identities = 57/142 (40%), Positives = 68/142 (47%), Gaps = 14/142 (9%)
Query: 142 SRSRSRSRYRGSRYSRSPYSRSPYSRSRYSRSPYSRSRYRESRYGGSHYSSSGYSNSRYS 201
S RSRS+ SRS +SRS SRS S SRSR R S SSS S SR S
Sbjct: 198 SNRRSRSK------SRSSHSRSS-SRSSSPSSSRSRSRSR------SRSSSSSQSRSRSS 244
Query: 202 RYHSSRSH-SKSGSSTSSRSASTSKSSSARRSKSSSVSRSRSRSRSSSMTRSPPRVSKRK 260
SRS SKS SS+ S S+S + S SSS R+R RSRS S + + + +
Sbjct: 245 SRERSRSRGSKSRSSSRSHRGSSSPRKRSYSSSSSSPERNRKRSRSRSSSSGDRKKRRTR 304
Query: 261 SKSRSRSKRPPKSPEEEGQMSS 282
S+S R R G SS
Sbjct: 305 SRSPERRHRSSSGSSHSGSRSS 326
Score = 61.6 bits (148), Expect = 7e-10
Identities = 45/91 (49%), Positives = 54/91 (59%), Gaps = 6/91 (6%)
Query: 192 SSGYSNSRYSRYHSSRSHSKSGSSTSSRSASTSKSSSARRSKSSSVSRSRSRSRSSSMTR 251
S+ ++R SR S SHS+S SSRS+S S S S RS+S S S S+SRSRSSS R
Sbjct: 193 SNKKKSNRRSRSKSRSSHSRS----SSRSSSPSSSRSRSRSRSRSSSSSQSRSRSSSRER 248
Query: 252 SPPRVSKRKSKSRSRSKRPPKSPEEEGQMSS 282
S R S KS+S SRS R SP + SS
Sbjct: 249 SRSRGS--KSRSSSRSHRGSSSPRKRSYSSS 277
Score = 45.8 bits (107), Expect = 4e-05
Identities = 47/127 (37%), Positives = 53/127 (41%), Gaps = 23/127 (18%)
Query: 94 RRDLPRSRQGEPRGRSRGGGYGR---------RSRSYGRRSRSPRRRHRSRSRGPSCSRS 144
R P S + R RSR + RSRS G +SRS R H RG S R
Sbjct: 216 RSSSPSSSRSRSRSRSRSSSSSQSRSRSSSRERSRSRGSKSRSSSRSH----RGSSSPRK 271
Query: 145 RSRSRYRGSRYSRSPYSRSPYSRSRYSRSPYSRSRYRESRYGGSHYSSSGYSNSRYSRYH 204
RS S S SRS S S + +RSR E R H SSSG S+S
Sbjct: 272 RSYSSSSSSPERNRKRSRSRSSSSGDRKKRRTRSRSPERR----HRSSSGSSHS------ 321
Query: 205 SSRSHSK 211
SRS SK
Sbjct: 322 GSRSSSK 328
>gi|117938251 BCL2-associated transcription factor 1 isoform 2 [Homo
sapiens]
Length = 869
Score = 75.1 bits (183), Expect = 6e-14
Identities = 70/180 (38%), Positives = 82/180 (45%), Gaps = 24/180 (13%)
Query: 124 RSRSPRRRHRSRSRGPSCSRSRSRSRYRGSRY-SRS-PYSRS-------------PYSRS 168
RS S RS+SR S SRSRSRS R RY SRS YSRS Y +
Sbjct: 3 RSNSRSHSSRSKSRSQSSSRSRSRSHSRKKRYRSRSRTYSRSRSRDRMYSRDYRRDYRNN 62
Query: 169 RYSRSPYSRSRYRESRY--GGSHYSSSGYS---NSRYSRYHSSRSHSKSGSSTSSRSAST 223
R R PY Y GG Y GY N R+SR S R S RS S+
Sbjct: 63 RGMRRPYGYRGRGRGYYQGGGGRYHRGGYRPVWNRRHSR--SPRRGRSRSRSPKRRSVSS 120
Query: 224 SKS-SSARRSKSSSVSRSRSRSRSSSMTRSPPRVSKRKSKSRSRSKRPPKSPEEEGQMSS 282
+S S +RRS SS S S SRSSS P VSKR+ ++K+ P+EE + S
Sbjct: 121 QRSRSRSRRSYRSSRSPRSSSSRSSSPYSKSP-VSKRRGSQEKQTKKAEGEPQEESPLKS 179
Score = 61.2 bits (147), Expect = 1e-09
Identities = 79/251 (31%), Positives = 104/251 (41%), Gaps = 23/251 (9%)
Query: 50 HTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVARYGRRDLPRSRQGEPRGRS 109
H++ R + R + R ++D + D D R R YG R R GR
Sbjct: 28 HSRKKRYRSRSRTYSRSRSRDRMYSRDYRR-DYRNNRGMRRPYGYRGRGRGYYQGGGGRY 86
Query: 110 RGGGYGRRSRSYGRRSRSPRRRHRSRSRGP-----SCSRSRSRSR--YRGSRYSRSPYSR 162
GGY R R SRSPRR RSRSR P S RSRSRSR YR SR RS SR
Sbjct: 87 HRGGY--RPVWNRRHSRSPRRG-RSRSRSPKRRSVSSQRSRSRSRRSYRSSRSPRSSSSR 143
Query: 163 S--PYSRSRYSRSPYSRSRYRESRYGGSHYSSSGYSNSR--------YSRYHSSRSHSKS 212
S PYS+S S+ S+ + + G S S S+ + S +KS
Sbjct: 144 SSSPYSKSPVSKRRGSQEKQTKKAEGEPQEESPLKSKSQEEPKDTFEHDPSESIDEFNKS 203
Query: 213 GSSTSSRSASTSKSSSARRSKSSSVSRSRSRSRSSSMTRSP--PRVSKRKSKSRSRSKRP 270
+++ S ++ RS S + S+SSS + +P V K+ S
Sbjct: 204 SATSGDIWPGLSAYDNSPRSPHSPSPIATPPSQSSSCSDAPMLSTVHSAKNTPSQHSHSI 263
Query: 271 PKSPEEEGQMS 281
SPE G S
Sbjct: 264 QHSPERSGSGS 274
Score = 40.0 bits (92), Expect = 0.002
Identities = 60/222 (27%), Positives = 83/222 (37%), Gaps = 57/222 (25%)
Query: 99 RSRQGEPRGRSRGGGYGRRSRSYGRRSRSPRRRHRSRSRGPSCSRSRSRSRY-------- 150
R + RGRSR RRS S +RSRS RR SR P S SRS S Y
Sbjct: 98 RHSRSPRRGRSRSRSPKRRSVS-SQRSRSRSRRSYRSSRSPRSSSSRSSSPYSKSPVSKR 156
Query: 151 RGSRYSRS------PYSRSPYSR-----------------------------------SR 169
RGS+ ++ P SP S
Sbjct: 157 RGSQEKQTKKAEGEPQEESPLKSKSQEEPKDTFEHDPSESIDEFNKSSATSGDIWPGLSA 216
Query: 170 YS---RSPYSRSRYRESRYGGSHYSSSGYSNSRYSRYHSSRSHSKSGSSTSSRSASTSKS 226
Y RSP+S S S S + ++ +S ++ HS S + RS S S
Sbjct: 217 YDNSPRSPHSPSPIATPPSQSSSCSDAPMLSTVHSAKNTPSQHSHSIQHSPERSGSGSVG 276
Query: 227 SSARR---SKSSSVSRSRSRSRSSSMTRSPPRVSKRKSKSRS 265
+ + R S++S + SR RS + T +P + +S+ RS
Sbjct: 277 NGSSRYSPSQNSPIHHIPSR-RSPAKTIAPQNAPRDESRGRS 317
Score = 30.0 bits (66), Expect = 2.4
Identities = 37/142 (26%), Positives = 49/142 (34%), Gaps = 16/142 (11%)
Query: 114 YGRRSRSYGRRSRSPRRRHRSRSRGPSCSRSRSR--SRYRGSRYSRSPYSRSPYSRSRYS 171
Y + + + R +SP HR PS R +R R + + S
Sbjct: 633 YQKATEEHSTRQKSPEI-HRRIDISPSTLRKHTRLAGEERVFKEENQKGDKKLRCDSADL 691
Query: 172 RSPYSRSRYRESRYGGSHYSSSGYSNSR--------YSRYHSSRSHSKSGSSTSSRSAST 223
R R R S+ G S S SR Y Y S + SK R
Sbjct: 692 RHDIDRRRKERSKERGDSKGSRESSGSRKQEKTPKDYKEYKSYKDDSKH-----KREQDH 746
Query: 224 SKSSSARRSKSSSVSRSRSRSR 245
S+SSS+ S SS SR S+
Sbjct: 747 SRSSSSSASPSSPSSREEKESK 768
>gi|38488727 arginine/serine-rich coiled-coil 1 [Homo sapiens]
Length = 334
Score = 72.8 bits (177), Expect = 3e-13
Identities = 70/165 (42%), Positives = 86/165 (52%), Gaps = 23/165 (13%)
Query: 115 GRRSRSYGRRSRSPRRR-HRSRSRGPSCSRSRSRSRYRGSRYSRSPYSRSPYSRSRYSRS 173
GRRS SRS R++ HR RS S S SR+ SR +G R SRS SRS +SR RS
Sbjct: 2 GRRSSDTEEESRSKRKKKHRRRSSSSSSSDSRTYSRKKGGRKSRSK-SRS-WSRDLQPRS 59
Query: 174 PYSRSRYRESRYGGSHYSSSGYSNSRYSRYHSSRSHSKSGSSTSSRSASTSKSSSARRSK 233
+S R R H SSS S+S SR SR SRS KS +RS+
Sbjct: 60 -HSYDRRRR------HRSSS--SSSYGSRRKRSR----------SRSRGRGKSYRVQRSR 100
Query: 234 SSS-VSRSRSRSRSSSMTRSPPRVSKRKSKSRSRSKRPPKSPEEE 277
S S RSRSR R S +RS R S R+++SRSR + K ++E
Sbjct: 101 SKSRTRRSRSRPRLRSHSRSSERSSHRRTRSRSRDRERRKGRDKE 145
Score = 51.6 bits (122), Expect = 8e-07
Identities = 40/105 (38%), Positives = 47/105 (44%), Gaps = 4/105 (3%)
Query: 82 GRELRVQVARYGRRDLPRSRQGEPRGRSRGGGYGRRSRSYGRRSRSPRRRHRSRSRGPSC 141
GR+ R + + R PRS + R R R S SYG R + R R R R +
Sbjct: 41 GRKSRSKSRSWSRDLQPRSHSYDRRRRHRSSS----SSSYGSRRKRSRSRSRGRGKSYRV 96
Query: 142 SRSRSRSRYRGSRYSRSPYSRSPYSRSRYSRSPYSRSRYRESRYG 186
RSRS+SR R SR S S S R SRSR RE R G
Sbjct: 97 QRSRSKSRTRRSRSRPRLRSHSRSSERSSHRRTRSRSRDRERRKG 141
Score = 48.1 bits (113), Expect = 8e-06
Identities = 57/182 (31%), Positives = 72/182 (39%), Gaps = 24/182 (13%)
Query: 84 ELRVQVARYGRRDLPRSRQGEPRGRSRGGGYGRRSRSYGR----------RSRSPRRRHR 133
E R + + RR S + R SR G GR+SRS R S RRRHR
Sbjct: 11 ESRSKRKKKHRRRSSSSSSSDSRTYSRKKG-GRKSRSKSRSWSRDLQPRSHSYDRRRRHR 69
Query: 134 SRSRGPSCSR-SRSRSRYRGSRYSRSPYSRSPYSRSRYSRSPYSRSRYRESRYGGSHYSS 192
S S SR RSRSR RG S SR+R SR SR R R SH S
Sbjct: 70 SSSSSSYGSRRKRSRSRSRGRGKSYRVQRSRSKSRTRRSR---SRPRLR------SHSRS 120
Query: 193 SGYSNSRYSRYHSSRSHSKSGSSTSSRSASTSKSSSARRSKSSSVSRSRSRSRSSSMTRS 252
S S+ R +R S + G R K + + ++ R S + + +
Sbjct: 121 SERSSHRRTRSRSRDRERRKGRDKEKREKEKDK---GKDKELHNIKRGESGNIKAGLEHL 177
Query: 253 PP 254
PP
Sbjct: 178 PP 179
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.312 0.124 0.353
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,243,854
Number of Sequences: 37866
Number of extensions: 511233
Number of successful extensions: 16907
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 582
Number of HSP's successfully gapped in prelim test: 492
Number of HSP's that attempted gapping in prelim test: 4678
Number of HSP's gapped (non-prelim): 4462
length of query: 282
length of database: 18,247,518
effective HSP length: 101
effective length of query: 181
effective length of database: 14,423,052
effective search space: 2610572412
effective search space used: 2610572412
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.