Guide to the Human Genome
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Name: PTPRJ Sequence: fasta or formatted (1337aa) NCBI GI: 148728162
Description:

protein tyrosine phosphatase, receptor type, J isoform 1 precursor

Referenced in:

Protein Tyrosine Phosphatases

Other entries for this name:
alt prot [539aa] protein tyrosine phosphatase, receptor type, J isoform 2 precursor
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.2         83           2
 C cysteine            1.6         21           1
 D aspartate           4.9         65           2
 E glutamate           5.8         78           2
 F phenylalanine       3.1         41           1
 G glycine             7.5        100           2
 H histidine           1.9         26           1
 I isoleucine          6.1         82           3
 K lysine              4.7         63           2
 L leucine             6.4         86           6
 M methionine          1.0         14           1
 N asparagine          5.4         72           2
 P proline             6.1         82           4
 Q glutamine           3.5         47           2
 R arginine            3.6         48           1
 S serine              9.3        125           3
 T threonine           9.3        125           3
 V valine              7.9        106           2
 W tryptophan          1.4         19           1
 Y tyrosine            4.0         54           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   protein tyrosine phosphatase, receptor type, J isof... 
PTPRJ                 0.392   protein tyrosine phosphatase, receptor type, J isof...
PTPRB                 0.150   protein tyrosine phosphatase, receptor type, B isof...
PTPRB                 0.150   protein tyrosine phosphatase, receptor type, B isof...
PTPRH                 0.135   protein tyrosine phosphatase, receptor type, H isof...
PTPRH                 0.125   protein tyrosine phosphatase, receptor type, H isof...
PTPRO                 0.096   receptor-type protein tyrosine phosphatase O isoform ...
PTPRO                 0.095   receptor-type protein tyrosine phosphatase O isoform...
PTPRO                 0.095   receptor-type protein tyrosine phosphatase O isoform...
PTPRO                 0.094   receptor-type protein tyrosine phosphatase O isoform...
PTPRO                 0.094   receptor-type protein tyrosine phosphatase O isoform...
PTPRO                 0.094   receptor-type protein tyrosine phosphatase O isoform...
PTPRD                 0.093   protein tyrosine phosphatase, receptor type, D isofo...
PTPRD                 0.091   protein tyrosine phosphatase, receptor type, D isof...
PTPRD                 0.091   protein tyrosine phosphatase, receptor type, D isofo...
PTPRD                 0.090   protein tyrosine phosphatase, receptor type, D isofor...
PTPRD                 0.090   protein tyrosine phosphatase, receptor type, D isofo...
PTPRS                 0.087   protein tyrosine phosphatase, receptor type, sigma ...
PTPRS                 0.087   protein tyrosine phosphatase, receptor type, sigma ...
PTPRQ                 0.086   protein tyrosine phosphatase, receptor type, Q [Hom...
PTPRT                 0.083   protein tyrosine phosphatase, receptor type, T isof...
PTPRT                 0.083   protein tyrosine phosphatase, receptor type, T isof...
PTPRM                 0.082   protein tyrosine phosphatase, receptor type, M isof...
PTPRM                 0.082   protein tyrosine phosphatase, receptor type, M isof...
PTPRS                 0.081   protein tyrosine phosphatase, receptor type, sigma ...
PTPRF                 0.080   protein tyrosine phosphatase, receptor type, F isof...
PTPRF                 0.079   protein tyrosine phosphatase, receptor type, F isof...
PTPRS                 0.077   protein tyrosine phosphatase, receptor type, sigma ...
PTPRZ1                0.077   protein tyrosine phosphatase, receptor-type, zeta1 p...
PTPRG                 0.077   protein tyrosine phosphatase, receptor type, G prec...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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