Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: ITGA2B Sequence: fasta or formatted (1039aa) NCBI GI: 88758615
Description:

integrin alpha 2b preproprotein

Referenced in:

Coagulation
Integrins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.0         83           2
 C cysteine            1.9         20           1
 D aspartate           4.9         51           2
 E glutamate           5.7         59           2
 F phenylalanine       3.4         35           2
 G glycine             8.9         92           2
 H histidine           2.2         23           2
 I isoleucine          2.8         29           1
 K lysine              2.3         24           2
 L leucine            12.6        131           4
 M methionine          1.3         13           1
 N asparagine          3.6         37           2
 P proline             7.3         76           2
 Q glutamine           6.0         62           2
 R arginine            5.2         54           2
 S serine              7.2         75           2
 T threonine           3.6         37           2
 V valine              8.7         90           2
 W tryptophan          1.9         20           2
 Y tyrosine            2.7         28           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   integrin alpha 2b preproprotein 
ITGA8                 0.327   integrin, alpha 8 
ITGA5                 0.299   integrin alpha 5 precursor 
ITGAV                 0.289   integrin alpha-V isoform 1 precursor 
ITGAV                 0.277   integrin alpha-V isoform 2 
ITGAV                 0.270   integrin alpha-V isoform 3 precursor 
ITGA7                 0.125   integrin alpha 7 isoform 2 precursor 
ITGA7                 0.123   integrin alpha 7 isoform 1 precursor 
ITGA3                 0.117   integrin alpha 3 isoform a precursor 
ITGA3                 0.116   integrin alpha 3 isoform b precursor 
ITGA9                 0.107   integrin, alpha 9 precursor 
ITGA4                 0.107   integrin alpha 4 precursor 
ITGA7                 0.106   integrin alpha 7 isoform 3 
ITGA6                 0.101   integrin alpha chain, alpha 6 isoform b precursor [...
ITGA6                 0.100   integrin alpha chain, alpha 6 isoform a precursor [...
ITGA1                 0.078   integrin, alpha 1 precursor 
ITGAD                 0.069   integrin, alpha D precursor 
ITGA2                 0.069   integrin alpha 2 precursor 
ITGA10                0.063   integrin, alpha 10 precursor 
ITGAM                 0.059   integrin alpha M isoform 1 precursor 
ITGAX                 0.057   integrin alpha X precursor 
ITGAM                 0.057   integrin alpha M isoform 2 precursor 
ITGA11                0.056   integrin, alpha 11 precursor 
ITGAL                 0.055   integrin alpha L isoform b precursor 
ITGAL                 0.054   integrin alpha L isoform a precursor 
ITGAE                 0.050   integrin, alpha E precursor 
LOC100289853          0.017   PREDICTED: hypothetical protein XP_002347690 
GPLD1                 0.014   glycosylphosphatidylinositol specific phospholipase ...
ZNF608                0.005   zinc finger protein 608 
RBM26                 0.005   RNA binding motif protein 26 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press