Guide to the Human Genome
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Name: C4orf31 Sequence: fasta or formatted (568aa) NCBI GI: 109715837
Description:

hypothetical protein LOC79625

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.6         26           1
 C cysteine            1.9         11           1
 D aspartate           6.2         35           2
 E glutamate           5.6         32           2
 F phenylalanine       5.8         33           2
 G glycine             4.9         28           2
 H histidine           1.9         11           1
 I isoleucine          4.0         23           2
 K lysine             10.0         57           2
 L leucine             9.2         52           3
 M methionine          1.1          6           2
 N asparagine          3.2         18           1
 P proline             5.8         33           1
 Q glutamine           5.6         32           2
 R arginine            4.4         25           2
 S serine              8.1         46           4
 T threonine           6.3         36           3
 V valine              6.9         39           2
 W tryptophan          0.9          5           1
 Y tyrosine            3.5         20           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC79625 
FN1                   0.010   fibronectin 1 isoform 3 preproprotein 
FN1                   0.010   fibronectin 1 isoform 4 preproprotein 
FN1                   0.010   fibronectin 1 isoform 5 preproprotein 
FN1                   0.010   fibronectin 1 isoform 6 preproprotein 
C2orf67               0.008   hypothetical protein LOC151050 
IGFN1                 0.007   immunoglobulin-like and fibronectin type III domain...
FSD2                  0.007   fibronectin type III and SPRY domain containing 2 [H...
DCC                   0.006   deleted in colorectal carcinoma 
BMX                   0.006   BMX non-receptor tyrosine kinase 
BMX                   0.006   BMX non-receptor tyrosine kinase 
PTPRJ                 0.005   protein tyrosine phosphatase, receptor type, J isof...
LOXHD1                0.005   lipoxygenase homology domains 1 isoform 1 
TDRD6                 0.005   tudor domain containing 6 
SPATA5                0.005   spermatogenesis associated 5 
TTN                   0.005   titin isoform N2-A 
TTN                   0.005   titin isoform novex-2 
TTN                   0.005   titin isoform novex-1 
TTN                   0.005   titin isoform N2-B 
LOXHD1                0.004   lipoxygenase homology domains 1 isoform 2 
TEK                   0.004   TEK tyrosine kinase, endothelial precursor 
TRIM39                0.004   tripartite motif-containing 39 isoform 2 
TRIM39                0.004   tripartite motif-containing 39 isoform 1 
PTPRF                 0.004   protein tyrosine phosphatase, receptor type, F isof...
PTPRF                 0.004   protein tyrosine phosphatase, receptor type, F isof...
NCAPD3                0.004   non-SMC condensin II complex, subunit D3 
NRK                   0.004   Nik related kinase 
RBM26                 0.004   RNA binding motif protein 26 
USH2A                 0.004   usherin isoform B 
USH2A                 0.004   usherin isoform A 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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