Guide to the Human Genome
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Name: C8orf80 Sequence: fasta or formatted (796aa) NCBI GI: 149944486
Description:

hypothetical protein LOC389643

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.2         57           2
 C cysteine            1.9         15           2
 D aspartate           4.8         38           2
 E glutamate           9.7         77           3
 F phenylalanine       2.6         21           1
 G glycine             5.0         40           2
 H histidine           1.6         13           1
 I isoleucine          6.2         49           2
 K lysine              8.3         66           3
 L leucine            10.7         85           4
 M methionine          2.3         18           1
 N asparagine          2.5         20           1
 P proline             3.3         26           2
 Q glutamine           5.3         42           2
 R arginine            7.8         62           2
 S serine              6.7         53           2
 T threonine           5.0         40           2
 V valine              5.4         43           2
 W tryptophan          1.1          9           1
 Y tyrosine            2.8         22           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC389643 
LOC727832             0.009   golgi autoantigen, golgin subfamily a-like 
GRIPAP1               0.008   GRIP1 associated protein 1 isoform 1 
LOC440243             0.006   PREDICTED: Putative golgin subfamily A member 6-lik...
CEP350                0.006   centrosome-associated protein 350 
GRIPAP1               0.006   GRIP1 associated protein 1 isoform 2 
KIF21B                0.006   kinesin family member 21B 
LOC400352             0.006   PREDICTED: similar to Putative golgin subfamily A m...
LOC100132816          0.006   PREDICTED: similar to Putative golgin subfamily A m...
TTC3                  0.006   tetratricopeptide repeat domain 3 
TTC3                  0.006   tetratricopeptide repeat domain 3 
LOC283767             0.006   golgi autoantigen, golgin subfamily a-like 
EIF3A                 0.006   eukaryotic translation initiation factor 3, subunit 1...
GLE1                  0.005   GLE1 RNA export mediator homolog isoform 1 
GLE1                  0.005   GLE1 RNA export mediator homolog isoform 2 
KIAA1751              0.005   hypothetical protein LOC85452 
TRIM17                0.005   tripartite motif-containing 17 isoform 3 
TRIM17                0.005   tripartite motif-containing 17 isoform 2 
TRIM17                0.005   tripartite motif-containing 17 isoform 1 
TRIM17                0.005   tripartite motif-containing 17 isoform 1 
UPF3B                 0.005   UPF3 regulator of nonsense transcripts homolog B iso...
CFLAR                 0.005   CASP8 and FADD-like apoptosis regulator isoform 2 [...
CFLAR                 0.005   CASP8 and FADD-like apoptosis regulator isoform 1 [...
CFLAR                 0.005   CASP8 and FADD-like apoptosis regulator isoform 1 [...
SYF2                  0.005   SYF2 homolog, RNA splicing factor isoform 1 
DZIP1L                0.005   DAZ interacting protein 1-like 
MYH14                 0.005   myosin, heavy chain 14 isoform 1 
MYH14                 0.005   myosin, heavy chain 14 isoform 2 
MYH14                 0.005   myosin, heavy chain 14 isoform 3 
RNF20                 0.005   ring finger protein 20 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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