Guide to the Human Genome
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Name: TTC3 Sequence: fasta or formatted (2025aa) NCBI GI: 49640009
Description:

tetratricopeptide repeat domain 3

Referenced in:

Ring Finger Proteins
Tetratricopeptide Domains

Other entries for this name:
alt mRNA [2025aa] tetratricopeptide repeat domain 3
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.9        120           3
 C cysteine            2.7         55           2
 D aspartate           5.2        105           2
 E glutamate           8.7        176           2
 F phenylalanine       3.8         76           2
 G glycine             4.5         91           2
 H histidine           2.3         47           2
 I isoleucine          5.8        118           3
 K lysine              9.8        199           4
 L leucine             8.9        180           2
 M methionine          1.5         30           1
 N asparagine          4.9        100           2
 P proline             5.4        109           3
 Q glutamine           4.8         98           2
 R arginine            4.1         84           1
 S serine              8.5        173           4
 T threonine           3.7         74           3
 V valine              5.3        107           3
 W tryptophan          1.0         21           1
 Y tyrosine            3.1         62           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   tetratricopeptide repeat domain 3 
TTC3                  1.000   tetratricopeptide repeat domain 3 
DZIP3                 0.024   DAZ interacting protein 3, zinc finger 
RNF214                0.016   ring finger protein 214 
RNF214                0.016   ring finger protein 214 
PPP5C                 0.011   protein phosphatase 5, catalytic subunit 
STIP1                 0.010   stress-induced-phosphoprotein 1 (Hsp70/Hsp90-organizi...
DNAJC7                0.010   DnaJ (Hsp40) homolog, subfamily C, member 7 isoform...
CENPE                 0.008   centromere protein E 
SGTA                  0.008   small glutamine-rich tetratricopeptide 
SMC4                  0.008   SMC4 structural maintenance of chromosomes 4-like 1 ...
SMC4                  0.008   SMC4 structural maintenance of chromosomes 4-like 1 ...
AKAP9                 0.008   A-kinase anchor protein 9 isoform 2 
TTC28                 0.008   tetratricopeptide repeat domain 28 
LOC653720             0.008   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC653720             0.008   PREDICTED: similar to Golgin subfamily A member 8-l...
AKAP9                 0.008   A-kinase anchor protein 9 isoform 3 
NUMA1                 0.008   nuclear mitotic apparatus protein 1 
TPM1                  0.008   tropomyosin 1 alpha chain isoform 3 
LOC653073             0.008   PREDICTED: Golgin subfamily A member 8-like protein...
LOC653073             0.008   PREDICTED: Golgin subfamily A member 8-like protein...
LOC653073             0.008   PREDICTED: Golgin subfamily A member 8-like protein...
MYH10                 0.008   myosin, heavy polypeptide 10, non-muscle 
SYCP1                 0.008   synaptonemal complex protein 1 
MYO18A                0.008   myosin 18A isoform a 
SGTB                  0.008   small glutamine-rich tetratricopeptide repeat (TPR)-...
GCC2                  0.008   GRIP and coiled-coil domain-containing 2 
MYH11                 0.007   smooth muscle myosin heavy chain 11 isoform SM1A [Ho...
MYH11                 0.007   smooth muscle myosin heavy chain 11 isoform SM1B [Ho...
MYH11                 0.007   smooth muscle myosin heavy chain 11 isoform SM2B [Ho...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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