Guide to the Human Genome
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Name: C9orf129 Sequence: fasta or formatted (196aa) NCBI GI: 149363702
Description:

hypothetical protein LOC445577

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.7         17           2
 C cysteine            1.0          2           1
 D aspartate           3.1          6           1
 E glutamate           3.1          6           1
 F phenylalanine       2.0          4           1
 G glycine             9.7         19           2
 H histidine           5.1         10           2
 I isoleucine          2.6          5           1
 K lysine              2.0          4           1
 L leucine             5.1         10           1
 M methionine          1.5          3           1
 N asparagine          4.1          8           1
 P proline            14.8         29           2
 Q glutamine           6.1         12           2
 R arginine            3.6          7           2
 S serine             11.7         23           4
 T threonine           6.1         12           1
 V valine              4.6          9           1
 W tryptophan          1.5          3           1
 Y tyrosine            3.6          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC445577 
FAM120A               0.578   oxidative stress-associated Src activator 
MLL5                  0.035   myeloid/lymphoid or mixed-lineage leukemia 5 
MLL5                  0.035   myeloid/lymphoid or mixed-lineage leukemia 5 
KIAA1543              0.030   NEZHA isoform 2 
KIAA1543              0.030   NEZHA isoform 1 
SFPQ                  0.030   splicing factor proline/glutamine rich (polypyrimidin...
IQSEC2                0.030   IQ motif and Sec7 domain 2 isoform1 
PCLO                  0.030   piccolo isoform 2 
PCLO                  0.030   piccolo isoform 1 
KIAA1602              0.028   hypothetical protein LOC57701 
MED1                  0.028   mediator complex subunit 1 
XG                    0.028   XG glycoprotein isoform 2 precursor 
BCORL1                0.028   BCL6 co-repressor-like 1 
WDR33                 0.028   WD repeat domain 33 isoform 1 
SOX9                  0.025   transcription factor SOX9 
COL4A5                0.025   type IV collagen alpha 5 isoform 2 precursor 
COL4A5                0.025   type IV collagen alpha 5 isoform 1 precursor 
COL4A5                0.025   type IV collagen alpha 5 isoform 3 precursor 
EPS8                  0.025   epidermal growth factor receptor pathway substrate 8...
LOC100291624          0.025   PREDICTED: hypothetical protein XP_002345876 
LOC100289712          0.025   PREDICTED: hypothetical protein XP_002346761 
LOC100287455          0.025   PREDICTED: hypothetical protein XP_002342583 
BSN                   0.025   bassoon protein 
ANXA11                0.025   annexin A11 
ANXA11                0.025   annexin A11 
ANXA11                0.025   annexin A11 
ARAP1                 0.023   ArfGAP with RhoGAP domain, ankyrin repeat and PH dom...
TBX21                 0.023   T-box 21 
EP400                 0.023   E1A binding protein p400 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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